Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4643

Experiment: LB, pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4642 and Ac3H11_4643 are separated by 66 nucleotidesAc3H11_4643 and Ac3H11_4644 are separated by 20 nucleotidesAc3H11_4644 and Ac3H11_4645 are separated by 155 nucleotides Ac3H11_4642 - FIG00920846: hypothetical protein, at 249,984 to 251,276 _4642 Ac3H11_4643 - Exopolyphosphatase-related protein, at 251,343 to 252,278 _4643 Ac3H11_4644 - Aquaporin Z, at 252,299 to 253,045 _4644 Ac3H11_4645 - hypothetical protein, at 253,201 to 253,341 _4645 Position (kb) 251 252 253Strain fitness (log2 ratio) -2 -1 0 1 2 3at 250.569 kb on + strand, within Ac3H11_4642at 250.581 kb on + strand, within Ac3H11_4642at 250.581 kb on + strand, within Ac3H11_4642at 250.581 kb on + strand, within Ac3H11_4642at 250.581 kb on + strand, within Ac3H11_4642at 250.581 kb on + strand, within Ac3H11_4642at 250.582 kb on - strand, within Ac3H11_4642at 250.582 kb on - strand, within Ac3H11_4642at 250.590 kb on + strand, within Ac3H11_4642at 250.590 kb on + strand, within Ac3H11_4642at 250.590 kb on + strand, within Ac3H11_4642at 250.590 kb on + strand, within Ac3H11_4642at 250.590 kb on + strand, within Ac3H11_4642at 250.590 kb on + strand, within Ac3H11_4642at 250.887 kb on + strand, within Ac3H11_4642at 251.047 kb on - strand, within Ac3H11_4642at 251.196 kb on + strandat 251.197 kb on - strandat 251.323 kb on + strandat 251.323 kb on + strandat 251.323 kb on + strandat 251.324 kb on - strandat 251.324 kb on - strandat 251.358 kb on + strandat 251.358 kb on + strandat 251.359 kb on - strandat 251.514 kb on + strand, within Ac3H11_4643at 251.514 kb on + strand, within Ac3H11_4643at 251.514 kb on + strand, within Ac3H11_4643at 251.514 kb on + strand, within Ac3H11_4643at 251.514 kb on + strand, within Ac3H11_4643at 251.514 kb on + strand, within Ac3H11_4643at 251.514 kb on + strand, within Ac3H11_4643at 251.514 kb on + strand, within Ac3H11_4643at 251.514 kb on + strand, within Ac3H11_4643at 251.514 kb on + strand, within Ac3H11_4643at 251.514 kb on + strand, within Ac3H11_4643at 251.515 kb on - strand, within Ac3H11_4643at 251.515 kb on - strand, within Ac3H11_4643at 251.515 kb on - strand, within Ac3H11_4643at 251.515 kb on - strand, within Ac3H11_4643at 251.515 kb on - strand, within Ac3H11_4643at 251.515 kb on - strand, within Ac3H11_4643at 251.515 kb on - strand, within Ac3H11_4643at 251.515 kb on - strand, within Ac3H11_4643at 251.634 kb on + strand, within Ac3H11_4643at 251.634 kb on + strand, within Ac3H11_4643at 251.635 kb on - strand, within Ac3H11_4643at 251.643 kb on + strand, within Ac3H11_4643at 251.643 kb on + strand, within Ac3H11_4643at 251.643 kb on + strand, within Ac3H11_4643at 251.643 kb on + strand, within Ac3H11_4643at 251.644 kb on - strand, within Ac3H11_4643at 251.719 kb on - strand, within Ac3H11_4643at 251.719 kb on - strand, within Ac3H11_4643at 251.719 kb on - strand, within Ac3H11_4643at 251.719 kb on - strand, within Ac3H11_4643at 251.766 kb on + strand, within Ac3H11_4643at 251.766 kb on + strand, within Ac3H11_4643at 251.766 kb on + strand, within Ac3H11_4643at 251.766 kb on + strand, within Ac3H11_4643at 251.766 kb on + strand, within Ac3H11_4643at 251.766 kb on + strand, within Ac3H11_4643at 251.766 kb on + strand, within Ac3H11_4643at 251.766 kb on + strand, within Ac3H11_4643at 251.766 kb on + strand, within Ac3H11_4643at 251.766 kb on + strand, within Ac3H11_4643at 251.767 kb on - strand, within Ac3H11_4643at 251.767 kb on - strand, within Ac3H11_4643at 251.767 kb on - strand, within Ac3H11_4643at 251.767 kb on - strand, within Ac3H11_4643at 251.767 kb on - strand, within Ac3H11_4643at 251.767 kb on - strand, within Ac3H11_4643at 251.767 kb on - strand, within Ac3H11_4643at 251.767 kb on - strand, within Ac3H11_4643at 251.767 kb on - strand, within Ac3H11_4643at 251.767 kb on - strand, within Ac3H11_4643at 251.767 kb on - strand, within Ac3H11_4643at 251.823 kb on + strand, within Ac3H11_4643at 251.823 kb on + strand, within Ac3H11_4643at 251.823 kb on + strand, within Ac3H11_4643at 251.823 kb on + strand, within Ac3H11_4643at 251.824 kb on - strand, within Ac3H11_4643at 251.824 kb on - strand, within Ac3H11_4643at 251.824 kb on - strand, within Ac3H11_4643at 251.824 kb on - strand, within Ac3H11_4643at 251.824 kb on - strand, within Ac3H11_4643at 251.824 kb on - strand, within Ac3H11_4643at 251.850 kb on + strand, within Ac3H11_4643at 251.851 kb on - strand, within Ac3H11_4643at 251.916 kb on + strand, within Ac3H11_4643at 252.039 kb on + strand, within Ac3H11_4643at 252.039 kb on + strand, within Ac3H11_4643at 252.039 kb on + strand, within Ac3H11_4643at 252.039 kb on + strand, within Ac3H11_4643at 252.039 kb on + strand, within Ac3H11_4643at 252.040 kb on - strand, within Ac3H11_4643at 252.040 kb on - strand, within Ac3H11_4643at 252.040 kb on - strand, within Ac3H11_4643at 252.040 kb on - strand, within Ac3H11_4643at 252.040 kb on - strand, within Ac3H11_4643at 252.040 kb on - strand, within Ac3H11_4643at 252.040 kb on - strand, within Ac3H11_4643at 252.040 kb on - strand, within Ac3H11_4643at 252.324 kb on + strandat 252.393 kb on + strand, within Ac3H11_4644at 252.393 kb on + strand, within Ac3H11_4644at 252.393 kb on + strand, within Ac3H11_4644at 252.393 kb on + strand, within Ac3H11_4644at 252.393 kb on + strand, within Ac3H11_4644at 252.393 kb on + strand, within Ac3H11_4644at 252.393 kb on + strand, within Ac3H11_4644at 252.394 kb on - strand, within Ac3H11_4644at 252.394 kb on - strand, within Ac3H11_4644at 252.394 kb on - strand, within Ac3H11_4644at 252.394 kb on - strand, within Ac3H11_4644at 252.394 kb on - strand, within Ac3H11_4644at 252.687 kb on + strand, within Ac3H11_4644at 252.687 kb on + strand, within Ac3H11_4644at 252.687 kb on + strand, within Ac3H11_4644at 252.687 kb on + strand, within Ac3H11_4644at 252.687 kb on + strand, within Ac3H11_4644at 252.687 kb on + strand, within Ac3H11_4644at 252.687 kb on + strand, within Ac3H11_4644at 252.688 kb on - strand, within Ac3H11_4644at 252.688 kb on - strand, within Ac3H11_4644at 252.688 kb on - strand, within Ac3H11_4644at 252.688 kb on - strand, within Ac3H11_4644at 252.688 kb on - strand, within Ac3H11_4644at 252.688 kb on - strand, within Ac3H11_4644at 252.688 kb on - strand, within Ac3H11_4644at 252.735 kb on + strand, within Ac3H11_4644at 252.735 kb on + strand, within Ac3H11_4644at 252.736 kb on - strand, within Ac3H11_4644at 252.736 kb on - strand, within Ac3H11_4644at 252.736 kb on - strand, within Ac3H11_4644at 252.831 kb on + strand, within Ac3H11_4644at 253.056 kb on + strandat 253.056 kb on + strandat 253.056 kb on + strandat 253.057 kb on - strandat 253.057 kb on - strandat 253.057 kb on - strandat 253.086 kb on - strandat 253.086 kb on - strandat 253.185 kb on + strandat 253.185 kb on + strandat 253.185 kb on + strandat 253.186 kb on - strandat 253.258 kb on + strand, within Ac3H11_4645at 253.258 kb on + strand, within Ac3H11_4645at 253.258 kb on + strand, within Ac3H11_4645at 253.258 kb on + strand, within Ac3H11_4645

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH8
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250,569 + Ac3H11_4642 0.45 -0.0
250,581 + Ac3H11_4642 0.46 +0.2
250,581 + Ac3H11_4642 0.46 +0.5
250,581 + Ac3H11_4642 0.46 +0.3
250,581 + Ac3H11_4642 0.46 -1.3
250,581 + Ac3H11_4642 0.46 -0.4
250,582 - Ac3H11_4642 0.46 +1.0
250,582 - Ac3H11_4642 0.46 +0.8
250,590 + Ac3H11_4642 0.47 -0.2
250,590 + Ac3H11_4642 0.47 +1.1
250,590 + Ac3H11_4642 0.47 -0.1
250,590 + Ac3H11_4642 0.47 +0.4
250,590 + Ac3H11_4642 0.47 -0.9
250,590 + Ac3H11_4642 0.47 +1.0
250,887 + Ac3H11_4642 0.70 -0.0
251,047 - Ac3H11_4642 0.82 +0.2
251,196 + +0.8
251,197 - +0.2
251,323 + +0.5
251,323 + +1.0
251,323 + +0.7
251,324 - +0.3
251,324 - -0.1
251,358 + +0.8
251,358 + -0.3
251,359 - +0.8
251,514 + Ac3H11_4643 0.18 +0.5
251,514 + Ac3H11_4643 0.18 +0.6
251,514 + Ac3H11_4643 0.18 +0.3
251,514 + Ac3H11_4643 0.18 -0.2
251,514 + Ac3H11_4643 0.18 +0.9
251,514 + Ac3H11_4643 0.18 +0.2
251,514 + Ac3H11_4643 0.18 +0.7
251,514 + Ac3H11_4643 0.18 +0.1
251,514 + Ac3H11_4643 0.18 -0.3
251,514 + Ac3H11_4643 0.18 +0.1
251,514 + Ac3H11_4643 0.18 +0.1
251,515 - Ac3H11_4643 0.18 +0.3
251,515 - Ac3H11_4643 0.18 -0.2
251,515 - Ac3H11_4643 0.18 -0.3
251,515 - Ac3H11_4643 0.18 +2.1
251,515 - Ac3H11_4643 0.18 +0.8
251,515 - Ac3H11_4643 0.18 +0.6
251,515 - Ac3H11_4643 0.18 +1.5
251,515 - Ac3H11_4643 0.18 +0.4
251,634 + Ac3H11_4643 0.31 +0.4
251,634 + Ac3H11_4643 0.31 -0.1
251,635 - Ac3H11_4643 0.31 +0.6
251,643 + Ac3H11_4643 0.32 -0.3
251,643 + Ac3H11_4643 0.32 +0.2
251,643 + Ac3H11_4643 0.32 +0.2
251,643 + Ac3H11_4643 0.32 -1.7
251,644 - Ac3H11_4643 0.32 +0.7
251,719 - Ac3H11_4643 0.40 -1.5
251,719 - Ac3H11_4643 0.40 +0.4
251,719 - Ac3H11_4643 0.40 +0.6
251,719 - Ac3H11_4643 0.40 +0.3
251,766 + Ac3H11_4643 0.45 -0.2
251,766 + Ac3H11_4643 0.45 +0.7
251,766 + Ac3H11_4643 0.45 -0.8
251,766 + Ac3H11_4643 0.45 +0.4
251,766 + Ac3H11_4643 0.45 +0.5
251,766 + Ac3H11_4643 0.45 +1.1
251,766 + Ac3H11_4643 0.45 +0.2
251,766 + Ac3H11_4643 0.45 +0.4
251,766 + Ac3H11_4643 0.45 -0.1
251,766 + Ac3H11_4643 0.45 -0.1
251,767 - Ac3H11_4643 0.45 -0.3
251,767 - Ac3H11_4643 0.45 +0.8
251,767 - Ac3H11_4643 0.45 -0.5
251,767 - Ac3H11_4643 0.45 +0.3
251,767 - Ac3H11_4643 0.45 +0.7
251,767 - Ac3H11_4643 0.45 -0.4
251,767 - Ac3H11_4643 0.45 +0.7
251,767 - Ac3H11_4643 0.45 +0.2
251,767 - Ac3H11_4643 0.45 -0.2
251,767 - Ac3H11_4643 0.45 +0.4
251,767 - Ac3H11_4643 0.45 +0.9
251,823 + Ac3H11_4643 0.51 +0.6
251,823 + Ac3H11_4643 0.51 +1.4
251,823 + Ac3H11_4643 0.51 -0.5
251,823 + Ac3H11_4643 0.51 +0.6
251,824 - Ac3H11_4643 0.51 +3.3
251,824 - Ac3H11_4643 0.51 -0.3
251,824 - Ac3H11_4643 0.51 -1.1
251,824 - Ac3H11_4643 0.51 +0.1
251,824 - Ac3H11_4643 0.51 +0.4
251,824 - Ac3H11_4643 0.51 +1.1
251,850 + Ac3H11_4643 0.54 -0.2
251,851 - Ac3H11_4643 0.54 +0.2
251,916 + Ac3H11_4643 0.61 -0.2
252,039 + Ac3H11_4643 0.74 -0.1
252,039 + Ac3H11_4643 0.74 -2.1
252,039 + Ac3H11_4643 0.74 +0.0
252,039 + Ac3H11_4643 0.74 +0.2
252,039 + Ac3H11_4643 0.74 -0.1
252,040 - Ac3H11_4643 0.74 +1.1
252,040 - Ac3H11_4643 0.74 +1.1
252,040 - Ac3H11_4643 0.74 +0.1
252,040 - Ac3H11_4643 0.74 +0.5
252,040 - Ac3H11_4643 0.74 +0.4
252,040 - Ac3H11_4643 0.74 +0.7
252,040 - Ac3H11_4643 0.74 +0.2
252,040 - Ac3H11_4643 0.74 -0.6
252,324 + +0.2
252,393 + Ac3H11_4644 0.13 +0.2
252,393 + Ac3H11_4644 0.13 +1.1
252,393 + Ac3H11_4644 0.13 +0.1
252,393 + Ac3H11_4644 0.13 +0.7
252,393 + Ac3H11_4644 0.13 -0.0
252,393 + Ac3H11_4644 0.13 +0.4
252,393 + Ac3H11_4644 0.13 -0.3
252,394 - Ac3H11_4644 0.13 +0.1
252,394 - Ac3H11_4644 0.13 +0.9
252,394 - Ac3H11_4644 0.13 -1.4
252,394 - Ac3H11_4644 0.13 +1.3
252,394 - Ac3H11_4644 0.13 +0.2
252,687 + Ac3H11_4644 0.52 +0.4
252,687 + Ac3H11_4644 0.52 -0.9
252,687 + Ac3H11_4644 0.52 -0.1
252,687 + Ac3H11_4644 0.52 +0.4
252,687 + Ac3H11_4644 0.52 +0.6
252,687 + Ac3H11_4644 0.52 -2.0
252,687 + Ac3H11_4644 0.52 -0.6
252,688 - Ac3H11_4644 0.52 +0.5
252,688 - Ac3H11_4644 0.52 +0.6
252,688 - Ac3H11_4644 0.52 +0.2
252,688 - Ac3H11_4644 0.52 +0.2
252,688 - Ac3H11_4644 0.52 +0.5
252,688 - Ac3H11_4644 0.52 -0.3
252,688 - Ac3H11_4644 0.52 +0.5
252,735 + Ac3H11_4644 0.58 +0.5
252,735 + Ac3H11_4644 0.58 +0.7
252,736 - Ac3H11_4644 0.59 -0.4
252,736 - Ac3H11_4644 0.59 +1.2
252,736 - Ac3H11_4644 0.59 +0.5
252,831 + Ac3H11_4644 0.71 -1.4
253,056 + -1.3
253,056 + +0.7
253,056 + -0.0
253,057 - +0.7
253,057 - -0.4
253,057 - +1.2
253,086 - +1.5
253,086 - +1.5
253,185 + -0.0
253,185 + +1.0
253,185 + +0.1
253,186 - +0.3
253,258 + Ac3H11_4645 0.40 +0.5
253,258 + Ac3H11_4645 0.40 +1.5
253,258 + Ac3H11_4645 0.40 -2.0
253,258 + Ac3H11_4645 0.40 -0.4

Or see this region's nucleotide sequence