Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4239 and Ac3H11_4240 are separated by 76 nucleotides Ac3H11_4240 and Ac3H11_4241 are separated by 11 nucleotides Ac3H11_4241 and Ac3H11_4242 are separated by 69 nucleotides Ac3H11_4242 and Ac3H11_4243 are separated by 19 nucleotides Ac3H11_4243 and Ac3H11_4244 are separated by 30 nucleotides
Ac3H11_4239 - peptidase, M48 family, at 10,273 to 11,580
_4239
Ac3H11_4240 - hypothetical protein, at 11,657 to 11,806
_4240
Ac3H11_4241 - hypothetical protein, at 11,818 to 12,090
_4241
Ac3H11_4242 - Acylphosphate phosphohydrolase (EC 3.6.1.7), putative, at 12,160 to 12,462
_4242
Ac3H11_4243 - FIG003003: hypothetical protein, at 12,482 to 13,276
_4243
Ac3H11_4244 - sensor histidine kinase, at 13,307 to 14,629
_4244
Position (kb) 12
13
14 Strain fitness (log2 ratio) -1
0
1
2
3 at 11.578 kb on + strand at 11.578 kb on + strand at 11.579 kb on - strand at 11.579 kb on - strand at 11.579 kb on - strand at 11.774 kb on + strand, within Ac3H11_4240 at 11.775 kb on - strand, within Ac3H11_4240 at 11.775 kb on - strand, within Ac3H11_4240 at 11.775 kb on - strand, within Ac3H11_4240 at 11.775 kb on - strand, within Ac3H11_4240 at 11.775 kb on - strand, within Ac3H11_4240 at 11.775 kb on - strand, within Ac3H11_4240 at 11.853 kb on + strand, within Ac3H11_4241 at 11.854 kb on - strand, within Ac3H11_4241 at 12.148 kb on + strand at 12.148 kb on + strand at 12.148 kb on + strand at 12.149 kb on - strand at 12.149 kb on - strand at 12.460 kb on + strand at 12.461 kb on - strand at 12.461 kb on - strand at 12.461 kb on - strand at 12.559 kb on - strand at 12.639 kb on + strand, within Ac3H11_4243 at 12.640 kb on - strand, within Ac3H11_4243 at 12.640 kb on - strand, within Ac3H11_4243 at 12.735 kb on + strand, within Ac3H11_4243 at 12.736 kb on - strand, within Ac3H11_4243 at 12.736 kb on - strand, within Ac3H11_4243 at 12.736 kb on - strand, within Ac3H11_4243 at 13.084 kb on + strand, within Ac3H11_4243 at 13.095 kb on + strand, within Ac3H11_4243 at 13.095 kb on + strand, within Ac3H11_4243 at 13.095 kb on + strand, within Ac3H11_4243 at 13.095 kb on + strand, within Ac3H11_4243 at 13.096 kb on - strand, within Ac3H11_4243 at 13.096 kb on - strand, within Ac3H11_4243 at 13.098 kb on + strand, within Ac3H11_4243 at 13.098 kb on + strand, within Ac3H11_4243 at 13.098 kb on + strand, within Ac3H11_4243 at 13.098 kb on + strand, within Ac3H11_4243 at 13.099 kb on - strand, within Ac3H11_4243 at 13.099 kb on - strand, within Ac3H11_4243 at 13.099 kb on - strand, within Ac3H11_4243 at 13.099 kb on - strand, within Ac3H11_4243 at 13.140 kb on + strand, within Ac3H11_4243 at 13.140 kb on + strand, within Ac3H11_4243 at 13.141 kb on - strand, within Ac3H11_4243 at 13.141 kb on - strand, within Ac3H11_4243 at 13.482 kb on + strand, within Ac3H11_4244 at 13.482 kb on + strand, within Ac3H11_4244 at 13.483 kb on - strand, within Ac3H11_4244 at 13.483 kb on - strand, within Ac3H11_4244 at 13.692 kb on - strand, within Ac3H11_4244 at 13.713 kb on + strand, within Ac3H11_4244 at 13.795 kb on - strand, within Ac3H11_4244 at 14.265 kb on - strand, within Ac3H11_4244
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 11,578 + +0.0 11,578 + -0.0 11,579 - -0.1 11,579 - -0.5 11,579 - +0.5 11,774 + Ac3H11_4240 0.78 -0.3 11,775 - Ac3H11_4240 0.79 -0.2 11,775 - Ac3H11_4240 0.79 -0.0 11,775 - Ac3H11_4240 0.79 +2.8 11,775 - Ac3H11_4240 0.79 -0.1 11,775 - Ac3H11_4240 0.79 +0.3 11,775 - Ac3H11_4240 0.79 +0.9 11,853 + Ac3H11_4241 0.13 -1.7 11,854 - Ac3H11_4241 0.13 -0.3 12,148 + -0.0 12,148 + +0.1 12,148 + +0.1 12,149 - -0.0 12,149 - -0.1 12,460 + -0.0 12,461 - -0.7 12,461 - -0.4 12,461 - +0.7 12,559 - -1.1 12,639 + Ac3H11_4243 0.20 +0.8 12,640 - Ac3H11_4243 0.20 +0.7 12,640 - Ac3H11_4243 0.20 -0.1 12,735 + Ac3H11_4243 0.32 +1.0 12,736 - Ac3H11_4243 0.32 -0.1 12,736 - Ac3H11_4243 0.32 +0.2 12,736 - Ac3H11_4243 0.32 -0.1 13,084 + Ac3H11_4243 0.76 -0.8 13,095 + Ac3H11_4243 0.77 -0.3 13,095 + Ac3H11_4243 0.77 -1.1 13,095 + Ac3H11_4243 0.77 -1.3 13,095 + Ac3H11_4243 0.77 -0.7 13,096 - Ac3H11_4243 0.77 -0.2 13,096 - Ac3H11_4243 0.77 -0.5 13,098 + Ac3H11_4243 0.77 +0.3 13,098 + Ac3H11_4243 0.77 -0.5 13,098 + Ac3H11_4243 0.77 +0.3 13,098 + Ac3H11_4243 0.77 +0.4 13,099 - Ac3H11_4243 0.78 -0.3 13,099 - Ac3H11_4243 0.78 -0.5 13,099 - Ac3H11_4243 0.78 -0.1 13,099 - Ac3H11_4243 0.78 -0.3 13,140 + Ac3H11_4243 0.83 -0.3 13,140 + Ac3H11_4243 0.83 +0.0 13,141 - Ac3H11_4243 0.83 -0.3 13,141 - Ac3H11_4243 0.83 -0.4 13,482 + Ac3H11_4244 0.13 -0.1 13,482 + Ac3H11_4244 0.13 -0.2 13,483 - Ac3H11_4244 0.13 -0.1 13,483 - Ac3H11_4244 0.13 +0.3 13,692 - Ac3H11_4244 0.29 +1.1 13,713 + Ac3H11_4244 0.31 -1.3 13,795 - Ac3H11_4244 0.37 +0.3 14,265 - Ac3H11_4244 0.72 -0.5
Or see this region's nucleotide sequence