Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3948

Experiment: LB, pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3945 and Ac3H11_3946 overlap by 1 nucleotidesAc3H11_3946 and Ac3H11_3947 overlap by 20 nucleotidesAc3H11_3947 and Ac3H11_3948 overlap by 105 nucleotidesAc3H11_3948 and Ac3H11_3949 are separated by 15 nucleotides Ac3H11_3945 - Sensory histidine kinase QseC, at 167,801 to 169,138 _3945 Ac3H11_3946 - Two-component system response regulator QseB, at 169,138 to 169,797 _3946 Ac3H11_3947 - hypothetical protein, at 169,778 to 169,900 _3947 Ac3H11_3948 - Ferrichrome-iron receptor, at 169,796 to 172,105 _3948 Ac3H11_3949 - Outer membrane stress sensor protease DegS, at 172,121 to 173,644 _3949 Position (kb) 169 170 171 172 173Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 168.982 kb on - strand, within Ac3H11_3945at 168.982 kb on - strand, within Ac3H11_3945at 169.220 kb on + strand, within Ac3H11_3946at 169.220 kb on + strand, within Ac3H11_3946at 169.220 kb on + strand, within Ac3H11_3946at 169.221 kb on - strand, within Ac3H11_3946at 169.221 kb on - strand, within Ac3H11_3946at 169.418 kb on + strand, within Ac3H11_3946at 169.419 kb on - strand, within Ac3H11_3946at 169.505 kb on + strand, within Ac3H11_3946at 169.506 kb on - strand, within Ac3H11_3946at 169.506 kb on - strand, within Ac3H11_3946at 169.665 kb on - strand, within Ac3H11_3946at 169.724 kb on + strand, within Ac3H11_3946at 169.725 kb on - strand, within Ac3H11_3946at 169.809 kb on - strandat 169.809 kb on - strandat 169.913 kb on + strandat 170.234 kb on - strand, within Ac3H11_3948at 170.285 kb on + strand, within Ac3H11_3948at 170.285 kb on + strand, within Ac3H11_3948at 170.286 kb on - strand, within Ac3H11_3948at 170.286 kb on - strand, within Ac3H11_3948at 170.286 kb on - strand, within Ac3H11_3948at 170.327 kb on + strand, within Ac3H11_3948at 170.357 kb on + strand, within Ac3H11_3948at 170.358 kb on - strand, within Ac3H11_3948at 170.358 kb on - strand, within Ac3H11_3948at 170.358 kb on - strand, within Ac3H11_3948at 170.375 kb on + strand, within Ac3H11_3948at 170.426 kb on + strand, within Ac3H11_3948at 170.426 kb on + strand, within Ac3H11_3948at 170.426 kb on + strand, within Ac3H11_3948at 170.427 kb on - strand, within Ac3H11_3948at 170.459 kb on + strand, within Ac3H11_3948at 170.459 kb on + strand, within Ac3H11_3948at 170.459 kb on + strand, within Ac3H11_3948at 170.459 kb on + strand, within Ac3H11_3948at 170.459 kb on + strand, within Ac3H11_3948at 170.460 kb on - strand, within Ac3H11_3948at 170.460 kb on - strand, within Ac3H11_3948at 170.460 kb on - strand, within Ac3H11_3948at 170.460 kb on - strand, within Ac3H11_3948at 170.460 kb on - strand, within Ac3H11_3948at 170.460 kb on - strand, within Ac3H11_3948at 170.460 kb on - strand, within Ac3H11_3948at 170.460 kb on - strand, within Ac3H11_3948at 170.460 kb on - strand, within Ac3H11_3948at 170.520 kb on + strand, within Ac3H11_3948at 170.855 kb on + strand, within Ac3H11_3948at 170.855 kb on + strand, within Ac3H11_3948at 170.855 kb on + strand, within Ac3H11_3948at 170.856 kb on - strand, within Ac3H11_3948at 170.856 kb on - strand, within Ac3H11_3948at 170.856 kb on - strand, within Ac3H11_3948at 170.876 kb on + strand, within Ac3H11_3948at 170.912 kb on + strand, within Ac3H11_3948at 170.912 kb on + strand, within Ac3H11_3948at 170.913 kb on - strand, within Ac3H11_3948at 170.913 kb on - strand, within Ac3H11_3948at 170.913 kb on - strand, within Ac3H11_3948at 170.918 kb on + strand, within Ac3H11_3948at 170.919 kb on - strand, within Ac3H11_3948at 170.919 kb on - strand, within Ac3H11_3948at 170.919 kb on - strand, within Ac3H11_3948at 170.919 kb on - strand, within Ac3H11_3948at 170.919 kb on - strand, within Ac3H11_3948at 170.919 kb on - strand, within Ac3H11_3948at 170.924 kb on + strand, within Ac3H11_3948at 170.924 kb on + strand, within Ac3H11_3948at 170.924 kb on + strand, within Ac3H11_3948at 171.009 kb on - strand, within Ac3H11_3948at 171.020 kb on + strand, within Ac3H11_3948at 171.020 kb on + strand, within Ac3H11_3948at 171.143 kb on + strand, within Ac3H11_3948at 171.192 kb on - strand, within Ac3H11_3948at 171.317 kb on + strand, within Ac3H11_3948at 171.317 kb on + strand, within Ac3H11_3948at 171.326 kb on + strand, within Ac3H11_3948at 171.326 kb on + strand, within Ac3H11_3948at 171.326 kb on + strand, within Ac3H11_3948at 171.327 kb on - strand, within Ac3H11_3948at 171.372 kb on - strand, within Ac3H11_3948at 171.372 kb on - strand, within Ac3H11_3948at 171.387 kb on + strand, within Ac3H11_3948at 171.440 kb on + strand, within Ac3H11_3948at 171.440 kb on + strand, within Ac3H11_3948at 171.440 kb on + strand, within Ac3H11_3948at 171.441 kb on - strand, within Ac3H11_3948at 171.441 kb on - strand, within Ac3H11_3948at 171.494 kb on + strand, within Ac3H11_3948at 171.494 kb on + strand, within Ac3H11_3948at 171.494 kb on + strand, within Ac3H11_3948at 171.495 kb on - strand, within Ac3H11_3948at 171.503 kb on + strand, within Ac3H11_3948at 171.503 kb on + strand, within Ac3H11_3948at 171.504 kb on - strand, within Ac3H11_3948at 171.504 kb on - strand, within Ac3H11_3948at 171.539 kb on + strand, within Ac3H11_3948at 171.539 kb on + strand, within Ac3H11_3948at 171.540 kb on - strand, within Ac3H11_3948at 171.540 kb on - strand, within Ac3H11_3948at 171.617 kb on + strand, within Ac3H11_3948at 171.617 kb on + strand, within Ac3H11_3948at 171.617 kb on + strand, within Ac3H11_3948at 171.617 kb on + strand, within Ac3H11_3948at 171.756 kb on - strand, within Ac3H11_3948at 171.956 kb on + strandat 171.956 kb on + strandat 171.956 kb on + strandat 171.957 kb on - strandat 171.957 kb on - strandat 171.957 kb on - strandat 171.957 kb on - strandat 171.977 kb on + strandat 172.034 kb on + strandat 172.034 kb on + strandat 172.035 kb on - strandat 172.049 kb on + strandat 172.049 kb on + strandat 172.049 kb on + strandat 172.049 kb on + strandat 172.050 kb on - strandat 172.122 kb on + strandat 172.123 kb on - strandat 172.800 kb on + strand, within Ac3H11_3949at 172.818 kb on + strand, within Ac3H11_3949at 172.818 kb on + strand, within Ac3H11_3949at 172.818 kb on + strand, within Ac3H11_3949at 172.818 kb on + strand, within Ac3H11_3949at 172.818 kb on + strand, within Ac3H11_3949at 172.819 kb on - strand, within Ac3H11_3949at 172.819 kb on - strand, within Ac3H11_3949at 172.819 kb on - strand, within Ac3H11_3949at 172.819 kb on - strand, within Ac3H11_3949

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH8
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168,982 - Ac3H11_3945 0.88 +0.6
168,982 - Ac3H11_3945 0.88 -0.3
169,220 + Ac3H11_3946 0.12 +0.2
169,220 + Ac3H11_3946 0.12 +1.6
169,220 + Ac3H11_3946 0.12 -0.4
169,221 - Ac3H11_3946 0.13 +0.8
169,221 - Ac3H11_3946 0.13 +0.2
169,418 + Ac3H11_3946 0.42 +0.7
169,419 - Ac3H11_3946 0.43 +0.6
169,505 + Ac3H11_3946 0.56 +0.7
169,506 - Ac3H11_3946 0.56 +0.9
169,506 - Ac3H11_3946 0.56 +0.0
169,665 - Ac3H11_3946 0.80 +2.4
169,724 + Ac3H11_3946 0.89 -0.0
169,725 - Ac3H11_3946 0.89 +0.4
169,809 - +0.1
169,809 - +0.3
169,913 + -0.0
170,234 - Ac3H11_3948 0.19 -0.2
170,285 + Ac3H11_3948 0.21 -0.2
170,285 + Ac3H11_3948 0.21 -0.0
170,286 - Ac3H11_3948 0.21 -1.5
170,286 - Ac3H11_3948 0.21 -1.2
170,286 - Ac3H11_3948 0.21 -1.1
170,327 + Ac3H11_3948 0.23 +0.2
170,357 + Ac3H11_3948 0.24 -0.2
170,358 - Ac3H11_3948 0.24 -0.6
170,358 - Ac3H11_3948 0.24 +0.3
170,358 - Ac3H11_3948 0.24 -0.0
170,375 + Ac3H11_3948 0.25 -0.2
170,426 + Ac3H11_3948 0.27 +0.4
170,426 + Ac3H11_3948 0.27 -0.0
170,426 + Ac3H11_3948 0.27 +0.4
170,427 - Ac3H11_3948 0.27 -0.1
170,459 + Ac3H11_3948 0.29 -0.8
170,459 + Ac3H11_3948 0.29 +0.6
170,459 + Ac3H11_3948 0.29 +0.9
170,459 + Ac3H11_3948 0.29 +0.2
170,459 + Ac3H11_3948 0.29 +0.0
170,460 - Ac3H11_3948 0.29 +0.2
170,460 - Ac3H11_3948 0.29 +1.3
170,460 - Ac3H11_3948 0.29 +0.5
170,460 - Ac3H11_3948 0.29 -0.4
170,460 - Ac3H11_3948 0.29 +0.3
170,460 - Ac3H11_3948 0.29 +0.1
170,460 - Ac3H11_3948 0.29 +2.6
170,460 - Ac3H11_3948 0.29 +0.2
170,460 - Ac3H11_3948 0.29 -0.5
170,520 + Ac3H11_3948 0.31 +0.2
170,855 + Ac3H11_3948 0.46 +0.2
170,855 + Ac3H11_3948 0.46 +0.1
170,855 + Ac3H11_3948 0.46 -0.1
170,856 - Ac3H11_3948 0.46 +0.2
170,856 - Ac3H11_3948 0.46 -0.1
170,856 - Ac3H11_3948 0.46 +0.3
170,876 + Ac3H11_3948 0.47 -0.3
170,912 + Ac3H11_3948 0.48 +0.2
170,912 + Ac3H11_3948 0.48 -0.0
170,913 - Ac3H11_3948 0.48 -0.5
170,913 - Ac3H11_3948 0.48 -0.7
170,913 - Ac3H11_3948 0.48 +0.2
170,918 + Ac3H11_3948 0.49 -1.3
170,919 - Ac3H11_3948 0.49 -0.5
170,919 - Ac3H11_3948 0.49 -0.8
170,919 - Ac3H11_3948 0.49 -0.2
170,919 - Ac3H11_3948 0.49 -0.4
170,919 - Ac3H11_3948 0.49 +0.7
170,919 - Ac3H11_3948 0.49 -3.5
170,924 + Ac3H11_3948 0.49 -1.2
170,924 + Ac3H11_3948 0.49 -2.7
170,924 + Ac3H11_3948 0.49 +0.0
171,009 - Ac3H11_3948 0.53 +0.5
171,020 + Ac3H11_3948 0.53 -1.1
171,020 + Ac3H11_3948 0.53 -0.5
171,143 + Ac3H11_3948 0.58 -0.5
171,192 - Ac3H11_3948 0.60 +0.1
171,317 + Ac3H11_3948 0.66 +0.4
171,317 + Ac3H11_3948 0.66 -0.4
171,326 + Ac3H11_3948 0.66 -0.7
171,326 + Ac3H11_3948 0.66 -1.2
171,326 + Ac3H11_3948 0.66 -0.7
171,327 - Ac3H11_3948 0.66 +0.5
171,372 - Ac3H11_3948 0.68 +0.2
171,372 - Ac3H11_3948 0.68 +0.4
171,387 + Ac3H11_3948 0.69 +0.1
171,440 + Ac3H11_3948 0.71 +0.1
171,440 + Ac3H11_3948 0.71 +0.3
171,440 + Ac3H11_3948 0.71 +0.2
171,441 - Ac3H11_3948 0.71 +1.0
171,441 - Ac3H11_3948 0.71 +0.2
171,494 + Ac3H11_3948 0.74 -0.4
171,494 + Ac3H11_3948 0.74 -1.8
171,494 + Ac3H11_3948 0.74 +0.1
171,495 - Ac3H11_3948 0.74 +0.8
171,503 + Ac3H11_3948 0.74 -0.3
171,503 + Ac3H11_3948 0.74 -0.4
171,504 - Ac3H11_3948 0.74 -1.2
171,504 - Ac3H11_3948 0.74 -1.1
171,539 + Ac3H11_3948 0.75 -0.7
171,539 + Ac3H11_3948 0.75 +0.1
171,540 - Ac3H11_3948 0.75 +0.5
171,540 - Ac3H11_3948 0.75 -0.3
171,617 + Ac3H11_3948 0.79 +0.2
171,617 + Ac3H11_3948 0.79 -0.0
171,617 + Ac3H11_3948 0.79 -0.3
171,617 + Ac3H11_3948 0.79 +0.1
171,756 - Ac3H11_3948 0.85 -0.1
171,956 + +0.9
171,956 + +0.2
171,956 + -0.1
171,957 - -0.1
171,957 - -0.1
171,957 - +1.8
171,957 - +0.4
171,977 + +0.5
172,034 + +0.1
172,034 + +1.5
172,035 - -0.7
172,049 + +0.2
172,049 + +0.0
172,049 + +0.2
172,049 + +0.6
172,050 - -0.5
172,122 + -1.0
172,123 - -1.4
172,800 + Ac3H11_3949 0.45 -1.0
172,818 + Ac3H11_3949 0.46 -0.3
172,818 + Ac3H11_3949 0.46 -0.0
172,818 + Ac3H11_3949 0.46 -0.5
172,818 + Ac3H11_3949 0.46 -0.5
172,818 + Ac3H11_3949 0.46 -0.1
172,819 - Ac3H11_3949 0.46 -0.8
172,819 - Ac3H11_3949 0.46 +0.8
172,819 - Ac3H11_3949 0.46 +0.1
172,819 - Ac3H11_3949 0.46 +0.7

Or see this region's nucleotide sequence