Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3132

Experiment: LB, pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3129 and Ac3H11_3130 are separated by 13 nucleotidesAc3H11_3130 and Ac3H11_3131 overlap by 43 nucleotidesAc3H11_3131 and Ac3H11_3132 are separated by 18 nucleotidesAc3H11_3132 and Ac3H11_3133 are separated by 18 nucleotidesAc3H11_3133 and Ac3H11_3134 overlap by 4 nucleotides Ac3H11_3129 - SAM-dependent methyltransferase (EC 2.1.1.-), at 31,476 to 32,111 _3129 Ac3H11_3130 - Ferredoxin, at 32,125 to 32,421 _3130 Ac3H11_3131 - hypothetical protein, at 32,379 to 32,789 _3131 Ac3H11_3132 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25), at 32,808 to 33,929 _3132 Ac3H11_3133 - 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78), at 33,948 to 34,412 _3133 Ac3H11_3134 - Transcription termination protein NusB, at 34,409 to 34,951 _3134 Position (kb) 32 33 34Strain fitness (log2 ratio) -1 0 1at 31.899 kb on + strand, within Ac3H11_3129at 31.899 kb on + strand, within Ac3H11_3129at 31.899 kb on + strand, within Ac3H11_3129at 31.899 kb on + strand, within Ac3H11_3129at 31.899 kb on + strand, within Ac3H11_3129at 31.900 kb on - strand, within Ac3H11_3129at 31.900 kb on - strand, within Ac3H11_3129at 31.900 kb on - strand, within Ac3H11_3129at 31.900 kb on - strand, within Ac3H11_3129at 31.900 kb on - strand, within Ac3H11_3129at 31.900 kb on - strand, within Ac3H11_3129at 31.900 kb on - strand, within Ac3H11_3129at 31.900 kb on - strand, within Ac3H11_3129at 31.909 kb on - strand, within Ac3H11_3129at 32.180 kb on + strand, within Ac3H11_3130at 32.180 kb on + strand, within Ac3H11_3130at 32.180 kb on + strand, within Ac3H11_3130at 32.180 kb on + strand, within Ac3H11_3130at 32.180 kb on + strand, within Ac3H11_3130at 32.180 kb on + strand, within Ac3H11_3130at 32.180 kb on + strand, within Ac3H11_3130at 32.181 kb on - strand, within Ac3H11_3130at 32.181 kb on - strand, within Ac3H11_3130at 32.181 kb on - strand, within Ac3H11_3130at 32.181 kb on - strand, within Ac3H11_3130at 32.311 kb on + strand, within Ac3H11_3130at 32.312 kb on - strand, within Ac3H11_3130at 32.312 kb on - strand, within Ac3H11_3130at 32.471 kb on + strand, within Ac3H11_3131at 32.577 kb on + strand, within Ac3H11_3131at 32.577 kb on + strand, within Ac3H11_3131at 32.577 kb on + strand, within Ac3H11_3131at 32.644 kb on + strand, within Ac3H11_3131at 32.644 kb on + strand, within Ac3H11_3131at 32.644 kb on + strand, within Ac3H11_3131at 32.644 kb on + strand, within Ac3H11_3131at 33.069 kb on + strand, within Ac3H11_3132at 33.069 kb on + strand, within Ac3H11_3132at 33.666 kb on + strand, within Ac3H11_3132at 33.666 kb on + strand, within Ac3H11_3132at 33.666 kb on + strand, within Ac3H11_3132at 33.801 kb on + strand, within Ac3H11_3132at 33.801 kb on + strand, within Ac3H11_3132at 33.941 kb on + strandat 33.947 kb on + strandat 34.218 kb on + strand, within Ac3H11_3133at 34.218 kb on + strand, within Ac3H11_3133at 34.218 kb on + strand, within Ac3H11_3133at 34.278 kb on + strand, within Ac3H11_3133

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH8
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31,899 + Ac3H11_3129 0.67 +0.6
31,899 + Ac3H11_3129 0.67 +0.7
31,899 + Ac3H11_3129 0.67 -0.5
31,899 + Ac3H11_3129 0.67 -0.3
31,899 + Ac3H11_3129 0.67 +0.0
31,900 - Ac3H11_3129 0.67 -0.4
31,900 - Ac3H11_3129 0.67 -0.6
31,900 - Ac3H11_3129 0.67 -1.0
31,900 - Ac3H11_3129 0.67 +0.4
31,900 - Ac3H11_3129 0.67 +0.1
31,900 - Ac3H11_3129 0.67 -1.2
31,900 - Ac3H11_3129 0.67 -1.3
31,900 - Ac3H11_3129 0.67 -0.2
31,909 - Ac3H11_3129 0.68 -0.3
32,180 + Ac3H11_3130 0.19 -0.8
32,180 + Ac3H11_3130 0.19 +0.2
32,180 + Ac3H11_3130 0.19 -0.5
32,180 + Ac3H11_3130 0.19 +0.1
32,180 + Ac3H11_3130 0.19 -0.4
32,180 + Ac3H11_3130 0.19 -0.7
32,180 + Ac3H11_3130 0.19 -0.2
32,181 - Ac3H11_3130 0.19 -0.3
32,181 - Ac3H11_3130 0.19 -0.3
32,181 - Ac3H11_3130 0.19 -0.2
32,181 - Ac3H11_3130 0.19 +0.0
32,311 + Ac3H11_3130 0.63 -0.5
32,312 - Ac3H11_3130 0.63 -0.1
32,312 - Ac3H11_3130 0.63 +0.1
32,471 + Ac3H11_3131 0.22 -0.1
32,577 + Ac3H11_3131 0.48 +0.3
32,577 + Ac3H11_3131 0.48 -0.2
32,577 + Ac3H11_3131 0.48 -0.1
32,644 + Ac3H11_3131 0.64 -0.5
32,644 + Ac3H11_3131 0.64 -0.0
32,644 + Ac3H11_3131 0.64 +0.3
32,644 + Ac3H11_3131 0.64 +0.9
33,069 + Ac3H11_3132 0.23 +0.6
33,069 + Ac3H11_3132 0.23 +0.2
33,666 + Ac3H11_3132 0.76 +0.3
33,666 + Ac3H11_3132 0.76 +0.1
33,666 + Ac3H11_3132 0.76 -0.3
33,801 + Ac3H11_3132 0.89 +0.2
33,801 + Ac3H11_3132 0.89 -0.9
33,941 + +0.0
33,947 + -0.0
34,218 + Ac3H11_3133 0.58 -0.7
34,218 + Ac3H11_3133 0.58 -0.1
34,218 + Ac3H11_3133 0.58 +0.1
34,278 + Ac3H11_3133 0.71 -0.9

Or see this region's nucleotide sequence