Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004847

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
1,062,965	-				+0.8
1,062,965	-				+1.1
1,062,965	-				+0.9
1,062,965	-				-0.8
1,062,965	-				-0.4
1,062,965	-				-1.2
1,062,965	-				-0.5
1,062,965	-				+0.2
1,062,965	-				+1.5
1,062,965	-				+0.2
1,062,965	-				-0.5
1,062,965	-				-0.9
1,062,965	-				-1.0
1,062,965	-				-1.9
1,062,965	-				+1.1
1,063,115	-				+0.3
1,063,171	-				-1.3
1,063,171	-				-1.5
1,063,171	-				-1.3
1,063,171	-				-0.8
1,063,171	-				+2.1
1,063,171	-				-1.7
1,063,258	-		ABIE53_004846	0.23	+1.0
1,063,315	-		ABIE53_004846	0.38	+1.1
1,063,315	-		ABIE53_004846	0.38	-0.0
1,063,351	-		ABIE53_004846	0.47	-0.1
1,063,351	-		ABIE53_004846	0.47	-0.3
1,063,351	-		ABIE53_004846	0.47	-2.3
1,063,351	-		ABIE53_004846	0.47	-0.5
1,063,351	-		ABIE53_004846	0.47	-0.2
1,063,351	-		ABIE53_004846	0.47	+0.5
1,063,592	-				-1.8
1,063,592	-				-1.1
1,063,628	-				-0.5
1,063,628	-				+1.1
1,063,729	+				-1.0
1,063,729	+				-1.2
1,063,730	-				-2.8
1,063,730	-				-1.7
1,063,730	-				+2.1
1,063,730	-				-2.2
1,063,730	-				+2.1
1,063,730	-				-1.3
1,063,772	+				-2.6
1,063,772	+				+3.8
1,063,772	+				-0.1
1,063,773	-				-0.5
1,063,866	+				-2.7
1,063,866	+				-1.3
1,063,866	+				-1.8
1,063,866	+				-0.5
1,063,866	+				-0.7
1,063,866	+				-2.3
1,063,867	-				-1.7
1,063,867	-				-3.9
1,063,908	+				-2.2
1,063,951	-		ABIE53_004847	0.12	+0.5
1,063,989	-		ABIE53_004847	0.15	+0.4
1,064,007	+		ABIE53_004847	0.16	-0.1
1,064,007	+		ABIE53_004847	0.16	-0.8
1,064,073	+		ABIE53_004847	0.20	-0.1
1,064,073	+		ABIE53_004847	0.20	+2.2
1,064,073	+		ABIE53_004847	0.20	-3.3
1,064,073	+		ABIE53_004847	0.20	-0.8
1,064,073	+		ABIE53_004847	0.20	-0.5
1,064,073	+		ABIE53_004847	0.20	-2.1
1,064,073	+		ABIE53_004847	0.20	-2.4
1,064,073	+		ABIE53_004847	0.20	-1.3
1,064,074	-		ABIE53_004847	0.20	+0.5
1,064,074	-		ABIE53_004847	0.20	-2.2
1,064,074	-		ABIE53_004847	0.20	-3.1
1,064,074	-		ABIE53_004847	0.20	-1.3
1,064,074	-		ABIE53_004847	0.20	-1.1
1,064,074	-		ABIE53_004847	0.20	-1.3
1,064,074	-		ABIE53_004847	0.20	-1.2
1,064,076	+		ABIE53_004847	0.21	-0.1
1,064,076	+		ABIE53_004847	0.21	-0.5
1,064,077	-		ABIE53_004847	0.21	-1.7
1,064,279	+		ABIE53_004847	0.34	-0.4
1,064,279	+		ABIE53_004847	0.34	-0.8
1,064,279	+		ABIE53_004847	0.34	+0.3
1,064,279	+		ABIE53_004847	0.34	-1.9
1,064,279	+		ABIE53_004847	0.34	-1.5
1,064,279	+		ABIE53_004847	0.34	-1.9
1,064,280	-		ABIE53_004847	0.34	-0.1
1,064,280	-		ABIE53_004847	0.34	-0.8
1,064,280	-		ABIE53_004847	0.34	-1.7
1,064,283	+		ABIE53_004847	0.34	-0.5
1,064,283	+		ABIE53_004847	0.34	-2.5
1,064,283	+		ABIE53_004847	0.34	-0.3
1,064,283	+		ABIE53_004847	0.34	-3.6
1,064,283	+		ABIE53_004847	0.34	-1.0
1,064,283	+		ABIE53_004847	0.34	-1.5
1,064,283	+		ABIE53_004847	0.34	-2.6
1,064,283	+		ABIE53_004847	0.34	-1.9
1,064,283	+		ABIE53_004847	0.34	-3.9
1,064,283	+		ABIE53_004847	0.34	-0.5
1,064,283	+		ABIE53_004847	0.34	-2.6
1,064,283	+		ABIE53_004847	0.34	-0.6
1,064,284	-		ABIE53_004847	0.34	-2.3
1,064,284	-		ABIE53_004847	0.34	-0.1
1,064,284	-		ABIE53_004847	0.34	-0.8
1,064,284	-		ABIE53_004847	0.34	-1.9
1,064,284	-		ABIE53_004847	0.34	-1.5
1,064,284	-		ABIE53_004847	0.34	-3.8
1,064,284	-		ABIE53_004847	0.34	-1.5
1,064,284	-		ABIE53_004847	0.34	-3.3
1,064,284	-		ABIE53_004847	0.34	-0.8
1,064,284	-		ABIE53_004847	0.34	-2.2
1,064,284	-		ABIE53_004847	0.34	+0.5
1,064,284	-		ABIE53_004847	0.34	-1.1
1,064,284	-		ABIE53_004847	0.34	-2.7
1,064,284	-		ABIE53_004847	0.34	-0.8
1,064,284	-		ABIE53_004847	0.34	+0.4
1,064,284	-		ABIE53_004847	0.34	-3.0
1,064,367	+		ABIE53_004847	0.40	-4.4
1,064,367	+		ABIE53_004847	0.40	-0.5
1,064,367	+		ABIE53_004847	0.40	+1.1
1,064,367	+		ABIE53_004847	0.40	-1.1
1,064,368	-		ABIE53_004847	0.40	-1.9
1,064,368	-		ABIE53_004847	0.40	-2.4
1,064,400	+		ABIE53_004847	0.42	-1.8
1,064,400	+		ABIE53_004847	0.42	-2.6
1,064,400	+		ABIE53_004847	0.42	-1.0
1,064,400	+		ABIE53_004847	0.42	-0.5
1,064,400	+		ABIE53_004847	0.42	-2.3
1,064,401	-		ABIE53_004847	0.42	-0.1
1,064,401	-		ABIE53_004847	0.42	-0.9
1,064,401	-		ABIE53_004847	0.42	-0.5
1,064,401	-		ABIE53_004847	0.42	-1.8
1,064,401	-		ABIE53_004847	0.42	-0.8
1,064,401	-		ABIE53_004847	0.42	-2.3
1,064,401	-		ABIE53_004847	0.42	-1.1
1,064,401	-		ABIE53_004847	0.42	-0.3
1,064,401	-		ABIE53_004847	0.42	+0.7
1,064,409	+		ABIE53_004847	0.42	-0.5
1,064,409	+		ABIE53_004847	0.42	-0.5
1,064,409	+		ABIE53_004847	0.42	+0.5
1,064,409	+		ABIE53_004847	0.42	-3.3
1,064,410	-		ABIE53_004847	0.43	-2.1
1,064,418	+		ABIE53_004847	0.43	-2.6
1,064,418	+		ABIE53_004847	0.43	-1.4
1,064,418	+		ABIE53_004847	0.43	-0.4
1,064,418	+		ABIE53_004847	0.43	-1.5
1,064,418	+		ABIE53_004847	0.43	-2.3
1,064,418	+		ABIE53_004847	0.43	+1.5
1,064,427	+		ABIE53_004847	0.44	-1.2
1,064,427	+		ABIE53_004847	0.44	+0.5
1,064,428	-		ABIE53_004847	0.44	-0.5
1,064,428	-		ABIE53_004847	0.44	-0.2
1,064,430	-		ABIE53_004847	0.44	+1.5
1,064,508	+		ABIE53_004847	0.49	-0.8
1,064,508	+		ABIE53_004847	0.49	-1.7
1,064,508	+		ABIE53_004847	0.49	-2.4
1,064,509	-		ABIE53_004847	0.49	-1.4
1,064,509	-		ABIE53_004847	0.49	-2.5
1,064,544	+		ABIE53_004847	0.51	-0.1
1,064,544	+		ABIE53_004847	0.51	-3.3
1,064,544	+		ABIE53_004847	0.51	-1.8
1,064,544	+		ABIE53_004847	0.51	-2.4
1,064,544	+		ABIE53_004847	0.51	-1.5
1,064,544	+		ABIE53_004847	0.51	-2.0
1,064,545	-		ABIE53_004847	0.51	-0.7
1,064,545	-		ABIE53_004847	0.51	-0.5
1,064,545	-		ABIE53_004847	0.51	+0.5
1,064,545	-		ABIE53_004847	0.51	-0.8
1,064,545	-		ABIE53_004847	0.51	-0.1
1,064,545	-		ABIE53_004847	0.51	-0.5
1,064,545	-		ABIE53_004847	0.51	-2.1
1,064,545	-		ABIE53_004847	0.51	-2.9
1,064,545	-		ABIE53_004847	0.51	-0.5
1,064,597	-		ABIE53_004847	0.55	-0.5
1,064,613	+		ABIE53_004847	0.56	-1.5
1,064,613	+		ABIE53_004847	0.56	-1.7
1,064,614	-		ABIE53_004847	0.56	-0.0
1,064,759	+		ABIE53_004847	0.65	-4.2
1,064,759	+		ABIE53_004847	0.65	+1.2
1,064,760	-		ABIE53_004847	0.65	-1.8
1,064,760	-		ABIE53_004847	0.65	-2.3
1,064,760	-		ABIE53_004847	0.65	-0.9
1,064,760	-		ABIE53_004847	0.65	+0.5
1,064,778	+		ABIE53_004847	0.67	-0.4
1,064,778	+		ABIE53_004847	0.67	-2.2
1,064,778	+		ABIE53_004847	0.67	+0.5
1,064,778	+		ABIE53_004847	0.67	-2.2
1,064,778	+		ABIE53_004847	0.67	-0.8
1,064,778	+		ABIE53_004847	0.67	-0.9
1,064,778	+		ABIE53_004847	0.67	-1.7
1,064,779	-		ABIE53_004847	0.67	-1.4
1,064,779	-		ABIE53_004847	0.67	-2.4
1,064,779	-		ABIE53_004847	0.67	-1.3
1,064,796	+		ABIE53_004847	0.68	+1.3
1,064,796	+		ABIE53_004847	0.68	-1.5
1,064,797	-		ABIE53_004847	0.68	-1.5
1,064,797	-		ABIE53_004847	0.68	-1.1
1,064,797	-		ABIE53_004847	0.68	-0.8
1,064,815	+		ABIE53_004847	0.69	-1.2
1,064,815	+		ABIE53_004847	0.69	+0.5
1,064,815	+		ABIE53_004847	0.69	-3.2
1,064,815	+		ABIE53_004847	0.69	+0.5
1,064,815	+		ABIE53_004847	0.69	-1.9
1,064,815	+		ABIE53_004847	0.69	-1.5
1,064,815	+		ABIE53_004847	0.69	-0.8
1,064,815	+		ABIE53_004847	0.69	+2.5
1,064,815	+		ABIE53_004847	0.69	-3.8
1,064,815	+		ABIE53_004847	0.69	-1.8
1,064,816	-		ABIE53_004847	0.69	+1.3
1,064,816	-		ABIE53_004847	0.69	-0.8
1,064,816	-		ABIE53_004847	0.69	-3.3
1,064,816	-		ABIE53_004847	0.69	-0.3
1,064,816	-		ABIE53_004847	0.69	-1.9
1,064,969	+		ABIE53_004847	0.79	+0.0
1,064,969	+		ABIE53_004847	0.79	+0.5
1,064,969	+		ABIE53_004847	0.79	-2.4
1,064,969	+		ABIE53_004847	0.79	-3.6
1,064,970	-		ABIE53_004847	0.79	-0.8
1,064,970	-		ABIE53_004847	0.79	-0.8
1,064,970	-		ABIE53_004847	0.79	-3.9
1,064,970	-		ABIE53_004847	0.79	+2.2
1,064,970	-		ABIE53_004847	0.79	-0.7
1,064,970	-		ABIE53_004847	0.79	-2.8
1,064,970	-		ABIE53_004847	0.79	-2.2
1,065,038	+		ABIE53_004847	0.84	-0.9
1,065,039	-		ABIE53_004847	0.84	-2.9
1,065,100	+		ABIE53_004847	0.88	-1.1
1,065,100	+		ABIE53_004847	0.88	-0.4
1,065,100	+		ABIE53_004847	0.88	-1.9
1,065,100	+		ABIE53_004847	0.88	-0.5
1,065,100	+		ABIE53_004847	0.88	-1.7
1,065,100	+		ABIE53_004847	0.88	-0.8
1,065,100	+		ABIE53_004847	0.88	-0.1
1,065,101	-		ABIE53_004847	0.88	-1.8
1,065,101	-		ABIE53_004847	0.88	-0.5
1,065,101	-		ABIE53_004847	0.88	-2.2
1,065,162	+				-1.9
1,065,162	+				-0.1
1,065,162	+				-2.9
1,065,162	+				+0.5
1,065,163	-				-1.7
1,065,245	+				-1.3
1,065,362	+				+0.0
1,065,363	-				+2.5
1,065,363	-				+0.4
1,065,459	+		ABIE53_004848	0.19	-0.9
1,065,459	+		ABIE53_004848	0.19	-0.6
1,065,460	-		ABIE53_004848	0.19	-0.1
1,065,610	+		ABIE53_004848	0.47	-0.0
1,065,611	-		ABIE53_004848	0.47	-0.9
1,065,611	-		ABIE53_004848	0.47	+1.3
1,065,910	+				+1.0
1,065,910	+				+0.0
1,065,910	+				-2.5
1,065,910	+				-1.8
1,065,910	+				-1.8
1,065,910	+				-0.1
1,065,910	+				+0.8
1,065,910	+				+0.7
1,065,911	-				-1.5
1,065,911	-				-1.7
1,065,911	-				+1.5
1,065,911	-				+3.1
1,065,911	-				-0.9
1,065,911	-				-0.8
1,065,911	-				-0.8
1,065,911	-				+0.5
1,065,911	-				-1.3
1,065,941	+				+0.5
1,065,941	+				+0.3
1,065,941	+				-0.5
1,065,942	-		ABIE53_004849	0.10	-1.7
1,065,942	-		ABIE53_004849	0.10	+1.2
1,066,013	+		ABIE53_004849	0.22	-0.3
1,066,014	-		ABIE53_004849	0.23	-2.1
1,066,014	-		ABIE53_004849	0.23	-0.4
1,066,126	+		ABIE53_004849	0.42	+2.3
1,066,127	-		ABIE53_004849	0.42	+1.0
1,066,127	-		ABIE53_004849	0.42	+1.7
1,066,127	-		ABIE53_004849	0.42	-2.4
1,066,127	-		ABIE53_004849	0.42	+1.1