Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004172 and ABIE53_004173 overlap by 4 nucleotides ABIE53_004173 and ABIE53_004174 are separated by 155 nucleotides
ABIE53_004172: ABIE53_004172 - oligopeptide transport system ATP-binding protein, at 346,402 to 347,424
_004172
ABIE53_004173: ABIE53_004173 - oligopeptide transport system ATP-binding protein, at 347,421 to 348,440
_004173
ABIE53_004174: ABIE53_004174 - hypothetical protein, at 348,596 to 350,158
_004174
Position (kb) 347
348
349 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 346.440 kb on + strand at 346.761 kb on + strand, within ABIE53_004172 at 346.761 kb on + strand, within ABIE53_004172 at 346.849 kb on + strand, within ABIE53_004172 at 346.849 kb on + strand, within ABIE53_004172 at 347.083 kb on + strand, within ABIE53_004172 at 347.083 kb on + strand, within ABIE53_004172 at 347.083 kb on + strand, within ABIE53_004172 at 347.083 kb on + strand, within ABIE53_004172 at 347.084 kb on - strand, within ABIE53_004172 at 347.084 kb on - strand, within ABIE53_004172 at 347.147 kb on - strand, within ABIE53_004172 at 347.301 kb on + strand, within ABIE53_004172 at 347.301 kb on + strand, within ABIE53_004172 at 347.301 kb on + strand, within ABIE53_004172 at 347.302 kb on - strand, within ABIE53_004172 at 347.302 kb on - strand, within ABIE53_004172 at 347.302 kb on - strand, within ABIE53_004172 at 347.305 kb on + strand, within ABIE53_004172 at 347.305 kb on + strand, within ABIE53_004172 at 347.347 kb on - strand at 347.421 kb on - strand at 347.421 kb on - strand at 347.421 kb on - strand at 347.480 kb on + strand at 347.480 kb on + strand at 347.480 kb on + strand at 347.481 kb on - strand at 347.481 kb on - strand at 348.605 kb on - strand at 348.698 kb on + strand at 348.986 kb on + strand, within ABIE53_004174 at 349.010 kb on + strand, within ABIE53_004174 at 349.046 kb on + strand, within ABIE53_004174 at 349.205 kb on + strand, within ABIE53_004174 at 349.206 kb on - strand, within ABIE53_004174 at 349.206 kb on - strand, within ABIE53_004174
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 346,440 + +0.7 346,761 + ABIE53_004172 0.35 -1.4 346,761 + ABIE53_004172 0.35 +1.9 346,849 + ABIE53_004172 0.44 +2.0 346,849 + ABIE53_004172 0.44 -0.0 347,083 + ABIE53_004172 0.67 +0.1 347,083 + ABIE53_004172 0.67 +2.6 347,083 + ABIE53_004172 0.67 +3.6 347,083 + ABIE53_004172 0.67 +1.5 347,084 - ABIE53_004172 0.67 +0.6 347,084 - ABIE53_004172 0.67 +0.6 347,147 - ABIE53_004172 0.73 +0.0 347,301 + ABIE53_004172 0.88 -1.6 347,301 + ABIE53_004172 0.88 -0.2 347,301 + ABIE53_004172 0.88 +0.7 347,302 - ABIE53_004172 0.88 -1.4 347,302 - ABIE53_004172 0.88 -1.9 347,302 - ABIE53_004172 0.88 -1.8 347,305 + ABIE53_004172 0.88 -0.1 347,305 + ABIE53_004172 0.88 -0.4 347,347 - +0.8 347,421 - -0.8 347,421 - -1.0 347,421 - +1.5 347,480 + -1.0 347,480 + -0.4 347,480 + -0.1 347,481 - +0.2 347,481 - +0.5 348,605 - -1.1 348,698 + +3.4 348,986 + ABIE53_004174 0.25 +0.6 349,010 + ABIE53_004174 0.26 -0.8 349,046 + ABIE53_004174 0.29 -0.0 349,205 + ABIE53_004174 0.39 -3.5 349,206 - ABIE53_004174 0.39 -0.9 349,206 - ABIE53_004174 0.39 -0.6
Or see this region's nucleotide sequence