Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002966

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
3,356,684	-				-1.8
3,356,693	+				-0.4
3,356,693	+				-0.6
3,356,693	+				+0.5
3,356,693	+				-0.1
3,356,694	-				+0.5
3,356,694	-				-0.8
3,356,740	+				+1.2
3,356,741	-				-0.3
3,356,776	+				+1.3
3,356,776	+				+2.8
3,356,776	+				-1.5
3,356,777	-				+0.4
3,356,777	-				-2.5
3,356,777	-				-3.7
3,356,803	-				+1.5
3,356,803	-				+0.7
3,356,971	+		ABIE53_002965	0.26	+0.9
3,357,133	+		ABIE53_002965	0.54	+0.3
3,357,133	+		ABIE53_002965	0.54	+0.7
3,357,134	-		ABIE53_002965	0.55	+0.7
3,357,448	-				+0.0
3,357,459	+				+2.0
3,357,460	-				+1.0
3,357,460	-				-0.1
3,357,471	+				-0.2
3,357,483	+				+0.5
3,357,483	+				-3.2
3,357,483	+				-0.9
3,357,483	+				+1.5
3,357,483	+				+0.5
3,357,484	-				-0.1
3,357,484	-				+0.2
3,357,484	-				-0.5
3,357,484	-				-0.5
3,357,484	-				-0.4
3,357,484	-				-1.1
3,357,484	-				+0.5
3,357,484	-				+0.3
3,357,488	+				-3.0
3,357,489	-				-0.6
3,357,506	+				+1.4
3,357,506	+				+1.0
3,357,506	+				-0.5
3,357,506	+				-0.5
3,357,506	+				+0.5
3,357,506	+				-1.1
3,357,507	-				-0.4
3,357,507	-				-0.1
3,357,555	-				+1.5
3,357,597	+				+1.4
3,357,597	+				-1.7
3,357,597	+				-2.9
3,357,657	+				-0.2
3,357,657	+				+4.7
3,357,657	+				+1.0
3,357,657	+				-1.7
3,357,657	+				+2.2
3,357,657	+				-0.5
3,357,658	-		ABIE53_002966	0.10	+1.5
3,357,658	-		ABIE53_002966	0.10	-0.8
3,357,735	+		ABIE53_002966	0.14	-1.5
3,357,735	+		ABIE53_002966	0.14	-1.5
3,357,735	+		ABIE53_002966	0.14	-2.2
3,357,735	+		ABIE53_002966	0.14	+0.8
3,357,736	-		ABIE53_002966	0.14	-0.5
3,357,736	-		ABIE53_002966	0.14	+0.5
3,357,736	-		ABIE53_002966	0.14	+1.2
3,357,870	-		ABIE53_002966	0.22	+2.3
3,358,149	+		ABIE53_002966	0.38	+1.8
3,358,185	+		ABIE53_002966	0.40	+0.5
3,358,185	+		ABIE53_002966	0.40	+0.7
3,358,185	+		ABIE53_002966	0.40	-1.0
3,358,185	+		ABIE53_002966	0.40	-1.7
3,358,185	+		ABIE53_002966	0.40	+0.1
3,358,185	+		ABIE53_002966	0.40	+0.9
3,358,186	-		ABIE53_002966	0.40	-0.0
3,358,206	+		ABIE53_002966	0.41	+0.5
3,358,206	+		ABIE53_002966	0.41	+0.6
3,358,206	+		ABIE53_002966	0.41	+0.2
3,358,206	+		ABIE53_002966	0.41	-1.7
3,358,206	+		ABIE53_002966	0.41	+0.6
3,358,206	+		ABIE53_002966	0.41	+0.5
3,358,207	-		ABIE53_002966	0.41	+0.4
3,358,207	-		ABIE53_002966	0.41	-0.8
3,358,207	-		ABIE53_002966	0.41	+1.5
3,358,207	-		ABIE53_002966	0.41	-0.1
3,358,207	-		ABIE53_002966	0.41	-0.8
3,358,207	-		ABIE53_002966	0.41	+0.5
3,358,207	-		ABIE53_002966	0.41	+0.2
3,358,207	-		ABIE53_002966	0.41	+1.4
3,358,260	+		ABIE53_002966	0.44	+0.6
3,358,261	-		ABIE53_002966	0.44	-2.7
3,358,261	-		ABIE53_002966	0.44	-1.4
3,358,261	-		ABIE53_002966	0.44	+1.1
3,358,328	+		ABIE53_002966	0.48	-0.3
3,358,328	+		ABIE53_002966	0.48	+2.8
3,358,328	+		ABIE53_002966	0.48	+0.7
3,358,328	+		ABIE53_002966	0.48	+1.5
3,358,329	-		ABIE53_002966	0.48	-0.5
3,358,329	-		ABIE53_002966	0.48	-1.1
3,358,329	-		ABIE53_002966	0.48	+0.0
3,358,329	-		ABIE53_002966	0.48	-0.7
3,358,329	-		ABIE53_002966	0.48	+0.1
3,358,329	-		ABIE53_002966	0.48	-2.3
3,358,329	-		ABIE53_002966	0.48	+1.5
3,358,329	-		ABIE53_002966	0.48	+0.2
3,358,377	+		ABIE53_002966	0.51	+1.4
3,358,378	-		ABIE53_002966	0.51	-0.3
3,358,422	+		ABIE53_002966	0.53	-1.7
3,358,422	+		ABIE53_002966	0.53	+0.3
3,358,422	+		ABIE53_002966	0.53	-1.9
3,358,422	+		ABIE53_002966	0.53	-1.8
3,358,422	+		ABIE53_002966	0.53	+0.1
3,358,422	+		ABIE53_002966	0.53	+2.1
3,358,422	+		ABIE53_002966	0.53	-1.1
3,358,422	+		ABIE53_002966	0.53	+0.5
3,358,423	-		ABIE53_002966	0.54	+1.2
3,358,423	-		ABIE53_002966	0.54	+0.5
3,358,423	-		ABIE53_002966	0.54	+0.2
3,358,423	-		ABIE53_002966	0.54	-1.1
3,358,423	-		ABIE53_002966	0.54	+0.4
3,358,461	+		ABIE53_002966	0.56	-0.1
3,358,461	+		ABIE53_002966	0.56	-4.0
3,358,461	+		ABIE53_002966	0.56	+3.8
3,358,462	-		ABIE53_002966	0.56	+1.2
3,358,462	-		ABIE53_002966	0.56	-0.1
3,358,462	-		ABIE53_002966	0.56	+0.9
3,358,462	-		ABIE53_002966	0.56	-0.3
3,358,462	-		ABIE53_002966	0.56	+1.4
3,358,462	-		ABIE53_002966	0.56	+0.9
3,358,462	-		ABIE53_002966	0.56	-0.2
3,358,500	+		ABIE53_002966	0.58	+0.5
3,358,500	+		ABIE53_002966	0.58	-1.3
3,358,500	+		ABIE53_002966	0.58	-0.1
3,358,500	+		ABIE53_002966	0.58	+0.4
3,358,501	-		ABIE53_002966	0.58	+0.8
3,358,501	-		ABIE53_002966	0.58	-0.1
3,358,563	+		ABIE53_002966	0.61	+0.5
3,358,564	-		ABIE53_002966	0.62	+0.6
3,358,593	+		ABIE53_002966	0.63	-0.2
3,358,593	+		ABIE53_002966	0.63	-1.1
3,358,593	+		ABIE53_002966	0.63	-0.1
3,358,593	+		ABIE53_002966	0.63	+1.5
3,358,593	+		ABIE53_002966	0.63	+0.9
3,358,593	+		ABIE53_002966	0.63	-3.5
3,358,593	+		ABIE53_002966	0.63	+0.9
3,358,593	+		ABIE53_002966	0.63	+0.9
3,358,594	-		ABIE53_002966	0.63	+0.3
3,358,594	-		ABIE53_002966	0.63	-2.3
3,358,594	-		ABIE53_002966	0.63	-0.2
3,358,594	-		ABIE53_002966	0.63	+0.2
3,358,594	-		ABIE53_002966	0.63	-1.2
3,358,687	-		ABIE53_002966	0.69	-1.8
3,358,836	+		ABIE53_002966	0.77	-0.5
3,358,836	+		ABIE53_002966	0.77	+0.8
3,358,836	+		ABIE53_002966	0.77	+1.5
3,358,836	+		ABIE53_002966	0.77	-0.2
3,358,836	+		ABIE53_002966	0.77	+0.3
3,358,836	+		ABIE53_002966	0.77	+0.5
3,358,836	+		ABIE53_002966	0.77	+0.8
3,358,836	+		ABIE53_002966	0.77	-0.2
3,358,836	+		ABIE53_002966	0.77	-0.9
3,358,836	+		ABIE53_002966	0.77	+0.5
3,358,836	+		ABIE53_002966	0.77	-2.9
3,358,836	+		ABIE53_002966	0.77	-2.7
3,358,836	+		ABIE53_002966	0.77	-1.1
3,358,837	-		ABIE53_002966	0.77	+0.1
3,358,837	-		ABIE53_002966	0.77	-0.6
3,358,837	-		ABIE53_002966	0.77	+0.5
3,358,837	-		ABIE53_002966	0.77	-0.1
3,358,837	-		ABIE53_002966	0.77	-0.3
3,358,837	-		ABIE53_002966	0.77	-2.1
3,358,837	-		ABIE53_002966	0.77	-0.6
3,358,837	-		ABIE53_002966	0.77	+1.3
3,358,837	-		ABIE53_002966	0.77	+2.8
3,358,837	-		ABIE53_002966	0.77	-1.8
3,358,837	-		ABIE53_002966	0.77	-1.8
3,358,837	-		ABIE53_002966	0.77	-0.3
3,358,837	-		ABIE53_002966	0.77	-0.1
3,358,887	+		ABIE53_002966	0.80	-1.8
3,358,888	-		ABIE53_002966	0.80	+0.8
3,358,888	-		ABIE53_002966	0.80	+2.1
3,358,888	-		ABIE53_002966	0.80	+0.5
3,358,888	-		ABIE53_002966	0.80	-1.8
3,358,915	+		ABIE53_002966	0.82	+0.7
3,358,916	-		ABIE53_002966	0.82	+2.7
3,358,916	-		ABIE53_002966	0.82	-0.0
3,358,916	-		ABIE53_002966	0.82	-1.1
3,358,916	-		ABIE53_002966	0.82	-1.7
3,358,916	-		ABIE53_002966	0.82	-1.7
3,358,980	-		ABIE53_002966	0.85	-0.1
3,358,980	-		ABIE53_002966	0.85	+0.4
3,359,072	+				-1.4
3,359,123	+				-0.3
3,359,123	+				-0.1
3,359,165	+				+0.4
3,359,422	+				-0.1
3,359,423	-				+2.1
3,359,423	-				-0.4
3,359,663	+				+1.5
3,359,663	+				-1.0
3,359,663	+				-1.4
3,359,745	+				-0.8
3,359,745	+				+0.5
3,359,745	+				-0.5