Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002642

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
2,974,453	+		ABIE53_002641	0.48	+0.5
2,974,465	+		ABIE53_002641	0.49	-2.2
2,974,465	+		ABIE53_002641	0.49	+0.5
2,974,465	+		ABIE53_002641	0.49	-0.0
2,974,465	+		ABIE53_002641	0.49	-0.0
2,974,465	+		ABIE53_002641	0.49	+0.2
2,974,465	+		ABIE53_002641	0.49	-2.2
2,974,465	+		ABIE53_002641	0.49	+0.7
2,974,465	+		ABIE53_002641	0.49	-1.3
2,974,465	+		ABIE53_002641	0.49	+0.2
2,974,466	-		ABIE53_002641	0.49	-0.8
2,974,466	-		ABIE53_002641	0.49	-0.8
2,974,466	-		ABIE53_002641	0.49	-1.2
2,974,466	-		ABIE53_002641	0.49	-0.0
2,974,466	-		ABIE53_002641	0.49	-1.3
2,974,466	-		ABIE53_002641	0.49	+1.0
2,974,466	-		ABIE53_002641	0.49	-0.9
2,974,658	-		ABIE53_002641	0.61	-1.3
2,974,685	-		ABIE53_002641	0.62	+0.7
2,974,685	-		ABIE53_002641	0.62	-0.2
2,974,685	-		ABIE53_002641	0.62	-0.5
2,975,029	+		ABIE53_002641	0.84	-1.0
2,975,029	+		ABIE53_002641	0.84	+0.5
2,975,029	+		ABIE53_002641	0.84	+1.9
2,975,029	+		ABIE53_002641	0.84	-0.5
2,975,030	-		ABIE53_002641	0.84	-1.3
2,975,293	+				-1.9
2,975,294	-				+2.5
2,975,322	+				-1.3
2,975,442	+				+1.5
2,975,442	+				-0.5
2,975,442	+				+1.5
2,975,443	-				-1.4
2,975,457	+				+1.0
2,975,457	+				-0.3
2,975,457	+				-0.6
2,975,457	+				-0.3
2,975,457	+				-0.8
2,975,457	+				+0.5
2,975,458	-				-2.2
2,975,489	+				-0.2
2,975,489	+				+0.5
2,975,548	+				+0.1
2,975,548	+				-0.3
2,975,595	-		ABIE53_002642	0.13	+1.1
2,975,621	+		ABIE53_002642	0.15	+1.4
2,975,709	+		ABIE53_002642	0.22	+1.4
2,975,709	+		ABIE53_002642	0.22	-0.5
2,975,709	+		ABIE53_002642	0.22	-0.5
2,975,710	-		ABIE53_002642	0.22	+3.3
2,975,792	-		ABIE53_002642	0.28	-0.8
2,976,147	-		ABIE53_002642	0.55	+1.5
2,976,147	-		ABIE53_002642	0.55	-0.8
2,976,147	-		ABIE53_002642	0.55	+2.3
2,976,147	-		ABIE53_002642	0.55	-0.8
2,976,147	-		ABIE53_002642	0.55	+0.5
2,976,155	+		ABIE53_002642	0.56	-1.8
2,976,156	-		ABIE53_002642	0.56	+1.5
2,976,156	-		ABIE53_002642	0.56	+1.5
2,976,156	-		ABIE53_002642	0.56	-1.9
2,976,182	+		ABIE53_002642	0.58	-0.7
2,976,182	+		ABIE53_002642	0.58	-0.3
2,976,182	+		ABIE53_002642	0.58	-1.9
2,976,182	+		ABIE53_002642	0.58	+1.8
2,976,183	-		ABIE53_002642	0.58	-0.0
2,976,183	-		ABIE53_002642	0.58	-0.1
2,976,183	-		ABIE53_002642	0.58	-0.0
2,976,282	+		ABIE53_002642	0.66	-2.0
2,976,282	+		ABIE53_002642	0.66	+1.5
2,976,297	-		ABIE53_002642	0.67	-0.5
2,976,297	-		ABIE53_002642	0.67	+1.5
2,976,733	+				+0.5
2,976,733	+				+0.9
2,976,733	+				-1.3
2,976,733	+				-0.1
2,976,733	+				+0.5
2,976,733	+				-1.9
2,976,733	+				-0.8
2,976,734	-				-0.8
2,976,734	-				+1.0
2,976,734	-				+0.8
2,976,734	-				+1.1
2,976,734	-				-0.6
2,976,740	-				-0.8
2,976,769	+				+0.1
2,976,769	+				-0.5
2,976,770	-				-1.6
2,976,811	-				+0.2
2,976,822	+				+2.0
2,976,822	+				+1.7
2,976,927	+		ABIE53_002643	0.13	+0.8
2,976,942	+		ABIE53_002643	0.14	+0.5
2,976,943	-		ABIE53_002643	0.14	+0.2
2,976,943	-		ABIE53_002643	0.14	-2.2
2,976,943	-		ABIE53_002643	0.14	-0.0
2,976,947	-		ABIE53_002643	0.14	+0.5
2,976,947	-		ABIE53_002643	0.14	-0.5
2,976,947	-		ABIE53_002643	0.14	+0.2
2,977,026	+		ABIE53_002643	0.20	-0.0
2,977,026	+		ABIE53_002643	0.20	-3.0
2,977,026	+		ABIE53_002643	0.20	-1.7
2,977,026	+		ABIE53_002643	0.20	+1.5
2,977,026	+		ABIE53_002643	0.20	-0.8
2,977,026	+		ABIE53_002643	0.20	+0.5
2,977,026	+		ABIE53_002643	0.20	-1.5
2,977,026	+		ABIE53_002643	0.20	+1.5
2,977,026	+		ABIE53_002643	0.20	-1.0
2,977,026	+		ABIE53_002643	0.20	+0.4
2,977,027	-		ABIE53_002643	0.20	+0.9
2,977,027	-		ABIE53_002643	0.20	-0.7
2,977,027	-		ABIE53_002643	0.20	+1.4
2,977,027	-		ABIE53_002643	0.20	-0.9
2,977,027	-		ABIE53_002643	0.20	-0.7
2,977,027	-		ABIE53_002643	0.20	-0.0
2,977,028	+		ABIE53_002643	0.20	+0.8
2,977,028	+		ABIE53_002643	0.20	-1.3
2,977,029	-		ABIE53_002643	0.20	-1.4
2,977,056	+		ABIE53_002643	0.23	+0.5
2,977,056	+		ABIE53_002643	0.23	+0.5
2,977,056	+		ABIE53_002643	0.23	-1.0
2,977,057	-		ABIE53_002643	0.23	+0.5
2,977,057	-		ABIE53_002643	0.23	-2.3
2,977,083	-		ABIE53_002643	0.25	+1.8
2,977,101	+		ABIE53_002643	0.26	+1.4
2,977,101	+		ABIE53_002643	0.26	-1.3
2,977,101	+		ABIE53_002643	0.26	+1.3
2,977,102	-		ABIE53_002643	0.26	+0.5
2,977,102	-		ABIE53_002643	0.26	-1.6
2,977,410	+		ABIE53_002643	0.49	-1.2
2,977,410	+		ABIE53_002643	0.49	-0.0
2,977,410	+		ABIE53_002643	0.49	-2.2
2,977,411	-		ABIE53_002643	0.49	+2.2
2,977,411	-		ABIE53_002643	0.49	+1.5
2,977,482	+		ABIE53_002643	0.55	+0.5
2,977,482	+		ABIE53_002643	0.55	-0.0
2,977,483	-		ABIE53_002643	0.55	+0.7
2,977,483	-		ABIE53_002643	0.55	-0.3
2,977,521	-		ABIE53_002643	0.57	+2.9
2,977,527	+		ABIE53_002643	0.58	+1.7
2,977,528	-		ABIE53_002643	0.58	-2.2
2,977,554	+		ABIE53_002643	0.60	-1.8
2,977,554	+		ABIE53_002643	0.60	+2.3
2,977,611	+		ABIE53_002643	0.64	+1.5
2,977,650	+		ABIE53_002643	0.67	+0.5
2,977,650	+		ABIE53_002643	0.67	-0.5
2,977,650	+		ABIE53_002643	0.67	-1.6
2,977,650	+		ABIE53_002643	0.67	+0.9
2,977,651	-		ABIE53_002643	0.67	+0.5
2,977,651	-		ABIE53_002643	0.67	-1.0
2,977,651	-		ABIE53_002643	0.67	-2.0
2,977,651	-		ABIE53_002643	0.67	-2.5