Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_001725 and ABIE53_001726 are separated by 72 nucleotides ABIE53_001726 and ABIE53_001727 are separated by 166 nucleotides
ABIE53_001725: ABIE53_001725 - AGZA family xanthine/uracil permease-like MFS transporter, at 1,946,783 to 1,948,165
_001725
ABIE53_001726: ABIE53_001726 - hypothetical protein, at 1,948,238 to 1,948,420
_001726
ABIE53_001727: ABIE53_001727 - nucleoside-diphosphate-sugar epimerase, at 1,948,587 to 1,949,552
_001727
Position (kb) 1948
1949 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1947.773 kb on + strand, within ABIE53_001725 at 1947.773 kb on + strand, within ABIE53_001725 at 1947.917 kb on + strand, within ABIE53_001725 at 1947.918 kb on - strand, within ABIE53_001725 at 1947.967 kb on + strand, within ABIE53_001725 at 1948.142 kb on + strand at 1948.142 kb on + strand at 1948.184 kb on + strand at 1948.184 kb on + strand at 1948.185 kb on - strand at 1948.185 kb on - strand at 1948.185 kb on - strand at 1948.185 kb on - strand at 1948.329 kb on + strand, within ABIE53_001726 at 1948.339 kb on - strand, within ABIE53_001726 at 1948.339 kb on - strand, within ABIE53_001726 at 1948.350 kb on + strand, within ABIE53_001726 at 1948.496 kb on + strand at 1948.527 kb on - strand at 1948.550 kb on - strand at 1948.558 kb on + strand at 1948.558 kb on + strand at 1948.559 kb on - strand at 1948.567 kb on + strand at 1948.721 kb on - strand, within ABIE53_001727 at 1948.852 kb on + strand, within ABIE53_001727 at 1948.852 kb on + strand, within ABIE53_001727 at 1948.852 kb on + strand, within ABIE53_001727 at 1948.853 kb on - strand, within ABIE53_001727 at 1948.853 kb on - strand, within ABIE53_001727 at 1948.913 kb on + strand, within ABIE53_001727 at 1949.035 kb on + strand, within ABIE53_001727 at 1949.035 kb on + strand, within ABIE53_001727 at 1949.035 kb on + strand, within ABIE53_001727 at 1949.035 kb on + strand, within ABIE53_001727 at 1949.036 kb on - strand, within ABIE53_001727 at 1949.045 kb on + strand, within ABIE53_001727 at 1949.045 kb on + strand, within ABIE53_001727 at 1949.158 kb on + strand, within ABIE53_001727 at 1949.220 kb on - strand, within ABIE53_001727 at 1949.220 kb on - strand, within ABIE53_001727 at 1949.220 kb on - strand, within ABIE53_001727
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 1,947,773 + ABIE53_001725 0.72 -1.1 1,947,773 + ABIE53_001725 0.72 +3.0 1,947,917 + ABIE53_001725 0.82 -1.1 1,947,918 - ABIE53_001725 0.82 -0.1 1,947,967 + ABIE53_001725 0.86 -0.5 1,948,142 + -1.1 1,948,142 + -0.8 1,948,184 + -0.5 1,948,184 + -1.8 1,948,185 - -0.5 1,948,185 - +0.5 1,948,185 - +0.1 1,948,185 - -0.1 1,948,329 + ABIE53_001726 0.50 -3.4 1,948,339 - ABIE53_001726 0.55 -0.5 1,948,339 - ABIE53_001726 0.55 -0.4 1,948,350 + ABIE53_001726 0.61 -0.3 1,948,496 + -0.8 1,948,527 - -1.0 1,948,550 - -0.5 1,948,558 + +0.5 1,948,558 + +1.5 1,948,559 - +0.6 1,948,567 + +1.5 1,948,721 - ABIE53_001727 0.14 -0.3 1,948,852 + ABIE53_001727 0.27 -1.1 1,948,852 + ABIE53_001727 0.27 +0.0 1,948,852 + ABIE53_001727 0.27 +1.5 1,948,853 - ABIE53_001727 0.28 -0.2 1,948,853 - ABIE53_001727 0.28 -0.2 1,948,913 + ABIE53_001727 0.34 +2.3 1,949,035 + ABIE53_001727 0.46 -1.3 1,949,035 + ABIE53_001727 0.46 -0.3 1,949,035 + ABIE53_001727 0.46 +0.1 1,949,035 + ABIE53_001727 0.46 -3.0 1,949,036 - ABIE53_001727 0.46 -1.8 1,949,045 + ABIE53_001727 0.47 -0.8 1,949,045 + ABIE53_001727 0.47 -0.2 1,949,158 + ABIE53_001727 0.59 +0.5 1,949,220 - ABIE53_001727 0.66 -0.4 1,949,220 - ABIE53_001727 0.66 -0.5 1,949,220 - ABIE53_001727 0.66 -0.1
Or see this region's nucleotide sequence