Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000051 and ABIE53_000052 are separated by 215 nucleotides ABIE53_000052 and ABIE53_000053 are separated by 14 nucleotides
ABIE53_000051: ABIE53_000051 - putative membrane protein, at 59,290 to 60,246
_000051
ABIE53_000052: ABIE53_000052 - tetratricopeptide (TPR) repeat protein, at 60,462 to 62,273
_000052
ABIE53_000053: ABIE53_000053 - uncharacterized protein YbaP (TraB family), at 62,288 to 63,466
_000053
Position (kb) 60
61
62
63 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 59.893 kb on + strand, within ABIE53_000051 at 59.893 kb on + strand, within ABIE53_000051 at 59.893 kb on + strand, within ABIE53_000051 at 59.893 kb on + strand, within ABIE53_000051 at 59.893 kb on + strand, within ABIE53_000051 at 59.893 kb on + strand, within ABIE53_000051 at 59.893 kb on + strand, within ABIE53_000051 at 59.894 kb on - strand, within ABIE53_000051 at 59.894 kb on - strand, within ABIE53_000051 at 59.894 kb on - strand, within ABIE53_000051 at 59.894 kb on - strand, within ABIE53_000051 at 59.894 kb on - strand, within ABIE53_000051 at 59.894 kb on - strand, within ABIE53_000051 at 59.894 kb on - strand, within ABIE53_000051 at 59.932 kb on + strand, within ABIE53_000051 at 59.932 kb on + strand, within ABIE53_000051 at 59.932 kb on + strand, within ABIE53_000051 at 59.933 kb on - strand, within ABIE53_000051 at 59.933 kb on - strand, within ABIE53_000051 at 59.933 kb on - strand, within ABIE53_000051 at 59.933 kb on - strand, within ABIE53_000051 at 59.933 kb on - strand, within ABIE53_000051 at 60.244 kb on + strand at 60.244 kb on + strand at 60.245 kb on - strand at 60.245 kb on - strand at 60.245 kb on - strand at 60.245 kb on - strand at 60.318 kb on + strand at 60.318 kb on + strand at 60.319 kb on - strand at 60.384 kb on + strand at 60.384 kb on + strand at 60.384 kb on + strand at 60.384 kb on + strand at 60.385 kb on - strand at 60.385 kb on - strand at 60.385 kb on - strand at 60.385 kb on - strand at 60.385 kb on - strand at 60.405 kb on - strand at 60.405 kb on - strand at 60.424 kb on + strand at 60.424 kb on + strand at 60.424 kb on + strand at 60.424 kb on + strand at 60.425 kb on - strand at 60.425 kb on - strand at 60.597 kb on + strand at 60.597 kb on + strand at 60.645 kb on + strand, within ABIE53_000052 at 60.645 kb on + strand, within ABIE53_000052 at 60.645 kb on + strand, within ABIE53_000052 at 60.646 kb on - strand, within ABIE53_000052 at 60.646 kb on - strand, within ABIE53_000052 at 60.646 kb on - strand, within ABIE53_000052 at 60.664 kb on - strand, within ABIE53_000052 at 60.801 kb on + strand, within ABIE53_000052 at 60.801 kb on + strand, within ABIE53_000052 at 60.848 kb on + strand, within ABIE53_000052 at 60.848 kb on + strand, within ABIE53_000052 at 60.848 kb on + strand, within ABIE53_000052 at 60.849 kb on - strand, within ABIE53_000052 at 60.849 kb on - strand, within ABIE53_000052 at 60.849 kb on - strand, within ABIE53_000052 at 60.903 kb on + strand, within ABIE53_000052 at 60.903 kb on + strand, within ABIE53_000052 at 60.904 kb on - strand, within ABIE53_000052 at 60.904 kb on - strand, within ABIE53_000052 at 61.070 kb on + strand, within ABIE53_000052 at 61.070 kb on + strand, within ABIE53_000052 at 61.070 kb on + strand, within ABIE53_000052 at 61.071 kb on - strand, within ABIE53_000052 at 61.137 kb on + strand, within ABIE53_000052 at 61.137 kb on + strand, within ABIE53_000052 at 61.188 kb on + strand, within ABIE53_000052 at 61.188 kb on + strand, within ABIE53_000052 at 61.188 kb on + strand, within ABIE53_000052 at 61.189 kb on - strand, within ABIE53_000052 at 61.189 kb on - strand, within ABIE53_000052 at 61.189 kb on - strand, within ABIE53_000052 at 61.210 kb on - strand, within ABIE53_000052 at 61.308 kb on + strand, within ABIE53_000052 at 61.308 kb on + strand, within ABIE53_000052 at 61.308 kb on + strand, within ABIE53_000052 at 61.309 kb on - strand, within ABIE53_000052 at 61.309 kb on - strand, within ABIE53_000052 at 61.309 kb on - strand, within ABIE53_000052 at 61.309 kb on - strand, within ABIE53_000052 at 61.338 kb on + strand, within ABIE53_000052 at 61.338 kb on + strand, within ABIE53_000052 at 61.338 kb on + strand, within ABIE53_000052 at 61.389 kb on + strand, within ABIE53_000052 at 61.390 kb on - strand, within ABIE53_000052 at 61.437 kb on + strand, within ABIE53_000052 at 61.437 kb on + strand, within ABIE53_000052 at 61.437 kb on + strand, within ABIE53_000052 at 61.437 kb on + strand, within ABIE53_000052 at 61.674 kb on + strand, within ABIE53_000052 at 61.752 kb on + strand, within ABIE53_000052 at 61.752 kb on + strand, within ABIE53_000052 at 61.752 kb on + strand, within ABIE53_000052 at 61.752 kb on + strand, within ABIE53_000052 at 61.752 kb on + strand, within ABIE53_000052 at 61.753 kb on - strand, within ABIE53_000052 at 61.753 kb on - strand, within ABIE53_000052 at 61.756 kb on + strand, within ABIE53_000052 at 61.756 kb on + strand, within ABIE53_000052 at 61.756 kb on + strand, within ABIE53_000052 at 61.756 kb on + strand, within ABIE53_000052 at 61.756 kb on + strand, within ABIE53_000052 at 61.757 kb on - strand, within ABIE53_000052 at 61.757 kb on - strand, within ABIE53_000052 at 61.757 kb on - strand, within ABIE53_000052 at 61.757 kb on - strand, within ABIE53_000052 at 61.757 kb on - strand, within ABIE53_000052 at 61.901 kb on + strand, within ABIE53_000052 at 61.901 kb on + strand, within ABIE53_000052 at 61.901 kb on + strand, within ABIE53_000052 at 61.901 kb on + strand, within ABIE53_000052 at 61.901 kb on + strand, within ABIE53_000052 at 61.902 kb on - strand, within ABIE53_000052 at 61.902 kb on - strand, within ABIE53_000052 at 61.902 kb on - strand, within ABIE53_000052 at 61.902 kb on - strand, within ABIE53_000052 at 61.902 kb on - strand, within ABIE53_000052 at 61.902 kb on - strand, within ABIE53_000052 at 61.902 kb on - strand, within ABIE53_000052 at 61.902 kb on - strand, within ABIE53_000052 at 61.932 kb on + strand, within ABIE53_000052 at 61.933 kb on - strand, within ABIE53_000052 at 62.267 kb on + strand at 62.267 kb on + strand at 62.271 kb on + strand at 62.272 kb on - strand at 62.272 kb on - strand at 62.289 kb on + strand at 62.289 kb on + strand at 62.290 kb on - strand at 62.378 kb on + strand at 62.378 kb on + strand at 62.378 kb on + strand at 62.378 kb on + strand at 62.379 kb on - strand at 62.379 kb on - strand at 62.440 kb on - strand, within ABIE53_000053 at 62.707 kb on - strand, within ABIE53_000053 at 62.707 kb on - strand, within ABIE53_000053 at 62.736 kb on + strand, within ABIE53_000053 at 62.736 kb on + strand, within ABIE53_000053 at 62.769 kb on + strand, within ABIE53_000053 at 62.769 kb on + strand, within ABIE53_000053 at 62.769 kb on + strand, within ABIE53_000053 at 62.770 kb on - strand, within ABIE53_000053 at 62.770 kb on - strand, within ABIE53_000053 at 62.770 kb on - strand, within ABIE53_000053 at 62.909 kb on + strand, within ABIE53_000053 at 62.910 kb on - strand, within ABIE53_000053 at 62.910 kb on - strand, within ABIE53_000053 at 62.910 kb on - strand, within ABIE53_000053 at 62.910 kb on - strand, within ABIE53_000053 at 62.910 kb on - strand, within ABIE53_000053 at 62.910 kb on - strand, within ABIE53_000053 at 62.917 kb on - strand, within ABIE53_000053 at 63.033 kb on + strand, within ABIE53_000053 at 63.034 kb on - strand, within ABIE53_000053 at 63.072 kb on + strand, within ABIE53_000053 at 63.072 kb on + strand, within ABIE53_000053 at 63.072 kb on + strand, within ABIE53_000053 at 63.072 kb on + strand, within ABIE53_000053 at 63.073 kb on - strand, within ABIE53_000053 at 63.073 kb on - strand, within ABIE53_000053 at 63.073 kb on - strand, within ABIE53_000053 at 63.073 kb on - strand, within ABIE53_000053 at 63.102 kb on + strand, within ABIE53_000053 at 63.102 kb on + strand, within ABIE53_000053 at 63.102 kb on + strand, within ABIE53_000053 at 63.102 kb on + strand, within ABIE53_000053 at 63.103 kb on - strand, within ABIE53_000053 at 63.103 kb on - strand, within ABIE53_000053 at 63.103 kb on - strand, within ABIE53_000053 at 63.131 kb on + strand, within ABIE53_000053 at 63.131 kb on + strand, within ABIE53_000053
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 59,893 + ABIE53_000051 0.63 -0.5 59,893 + ABIE53_000051 0.63 -1.6 59,893 + ABIE53_000051 0.63 +0.5 59,893 + ABIE53_000051 0.63 +1.9 59,893 + ABIE53_000051 0.63 -1.5 59,893 + ABIE53_000051 0.63 +1.8 59,893 + ABIE53_000051 0.63 -0.4 59,894 - ABIE53_000051 0.63 +0.9 59,894 - ABIE53_000051 0.63 +1.1 59,894 - ABIE53_000051 0.63 +1.1 59,894 - ABIE53_000051 0.63 -1.1 59,894 - ABIE53_000051 0.63 +0.2 59,894 - ABIE53_000051 0.63 +1.2 59,894 - ABIE53_000051 0.63 -1.4 59,932 + ABIE53_000051 0.67 +0.3 59,932 + ABIE53_000051 0.67 -0.4 59,932 + ABIE53_000051 0.67 +0.9 59,933 - ABIE53_000051 0.67 +0.9 59,933 - ABIE53_000051 0.67 +1.4 59,933 - ABIE53_000051 0.67 -0.8 59,933 - ABIE53_000051 0.67 +1.5 59,933 - ABIE53_000051 0.67 -2.6 60,244 + +2.0 60,244 + +0.2 60,245 - +0.6 60,245 - +0.2 60,245 - +0.3 60,245 - -1.1 60,318 + +1.2 60,318 + +0.2 60,319 - +1.5 60,384 + -1.0 60,384 + +0.1 60,384 + +1.5 60,384 + +1.3 60,385 - -0.6 60,385 - +1.7 60,385 - +0.4 60,385 - +2.0 60,385 - -0.8 60,405 - -1.8 60,405 - -1.1 60,424 + -1.1 60,424 + -0.5 60,424 + -2.0 60,424 + -1.1 60,425 - -0.1 60,425 - +0.5 60,597 + -0.4 60,597 + +0.7 60,645 + ABIE53_000052 0.10 +0.8 60,645 + ABIE53_000052 0.10 +0.7 60,645 + ABIE53_000052 0.10 +1.5 60,646 - ABIE53_000052 0.10 +1.2 60,646 - ABIE53_000052 0.10 -0.1 60,646 - ABIE53_000052 0.10 +0.2 60,664 - ABIE53_000052 0.11 -1.9 60,801 + ABIE53_000052 0.19 +0.0 60,801 + ABIE53_000052 0.19 -0.1 60,848 + ABIE53_000052 0.21 +0.6 60,848 + ABIE53_000052 0.21 -0.1 60,848 + ABIE53_000052 0.21 -0.2 60,849 - ABIE53_000052 0.21 +0.5 60,849 - ABIE53_000052 0.21 +0.4 60,849 - ABIE53_000052 0.21 +1.3 60,903 + ABIE53_000052 0.24 -0.1 60,903 + ABIE53_000052 0.24 -0.9 60,904 - ABIE53_000052 0.24 -0.2 60,904 - ABIE53_000052 0.24 +0.5 61,070 + ABIE53_000052 0.34 +1.0 61,070 + ABIE53_000052 0.34 +0.3 61,070 + ABIE53_000052 0.34 +0.4 61,071 - ABIE53_000052 0.34 +0.5 61,137 + ABIE53_000052 0.37 -0.8 61,137 + ABIE53_000052 0.37 +1.4 61,188 + ABIE53_000052 0.40 +0.3 61,188 + ABIE53_000052 0.40 +1.1 61,188 + ABIE53_000052 0.40 -3.0 61,189 - ABIE53_000052 0.40 -3.2 61,189 - ABIE53_000052 0.40 -2.3 61,189 - ABIE53_000052 0.40 +0.2 61,210 - ABIE53_000052 0.41 -0.3 61,308 + ABIE53_000052 0.47 +0.4 61,308 + ABIE53_000052 0.47 -1.9 61,308 + ABIE53_000052 0.47 +1.5 61,309 - ABIE53_000052 0.47 -2.7 61,309 - ABIE53_000052 0.47 +1.6 61,309 - ABIE53_000052 0.47 +1.9 61,309 - ABIE53_000052 0.47 +0.4 61,338 + ABIE53_000052 0.48 -1.5 61,338 + ABIE53_000052 0.48 -0.4 61,338 + ABIE53_000052 0.48 +1.5 61,389 + ABIE53_000052 0.51 +0.2 61,390 - ABIE53_000052 0.51 -0.4 61,437 + ABIE53_000052 0.54 +2.3 61,437 + ABIE53_000052 0.54 +2.3 61,437 + ABIE53_000052 0.54 +0.4 61,437 + ABIE53_000052 0.54 +2.4 61,674 + ABIE53_000052 0.67 -0.7 61,752 + ABIE53_000052 0.71 -0.7 61,752 + ABIE53_000052 0.71 -2.3 61,752 + ABIE53_000052 0.71 +0.4 61,752 + ABIE53_000052 0.71 -0.1 61,752 + ABIE53_000052 0.71 +0.5 61,753 - ABIE53_000052 0.71 +2.3 61,753 - ABIE53_000052 0.71 +1.4 61,756 + ABIE53_000052 0.71 -0.6 61,756 + ABIE53_000052 0.71 +1.1 61,756 + ABIE53_000052 0.71 -0.8 61,756 + ABIE53_000052 0.71 +0.6 61,756 + ABIE53_000052 0.71 -0.2 61,757 - ABIE53_000052 0.71 -1.3 61,757 - ABIE53_000052 0.71 -2.3 61,757 - ABIE53_000052 0.71 +0.5 61,757 - ABIE53_000052 0.71 -1.3 61,757 - ABIE53_000052 0.71 -2.1 61,901 + ABIE53_000052 0.79 -0.1 61,901 + ABIE53_000052 0.79 +0.7 61,901 + ABIE53_000052 0.79 -2.3 61,901 + ABIE53_000052 0.79 -1.9 61,901 + ABIE53_000052 0.79 -0.2 61,902 - ABIE53_000052 0.79 -1.9 61,902 - ABIE53_000052 0.79 +1.8 61,902 - ABIE53_000052 0.79 +1.5 61,902 - ABIE53_000052 0.79 -4.1 61,902 - ABIE53_000052 0.79 -1.6 61,902 - ABIE53_000052 0.79 -1.1 61,902 - ABIE53_000052 0.79 -2.5 61,902 - ABIE53_000052 0.79 -0.1 61,932 + ABIE53_000052 0.81 -2.1 61,933 - ABIE53_000052 0.81 -1.9 62,267 + +2.5 62,267 + -1.1 62,271 + -0.8 62,272 - -0.1 62,272 - -0.5 62,289 + +0.5 62,289 + -1.5 62,290 - +1.3 62,378 + +0.1 62,378 + +2.1 62,378 + -1.0 62,378 + -1.8 62,379 - +0.0 62,379 - +0.5 62,440 - ABIE53_000053 0.13 -2.2 62,707 - ABIE53_000053 0.36 -0.2 62,707 - ABIE53_000053 0.36 -0.1 62,736 + ABIE53_000053 0.38 -0.1 62,736 + ABIE53_000053 0.38 -1.6 62,769 + ABIE53_000053 0.41 +1.5 62,769 + ABIE53_000053 0.41 +0.4 62,769 + ABIE53_000053 0.41 +3.1 62,770 - ABIE53_000053 0.41 -2.2 62,770 - ABIE53_000053 0.41 -0.2 62,770 - ABIE53_000053 0.41 +0.5 62,909 + ABIE53_000053 0.53 -0.2 62,910 - ABIE53_000053 0.53 +1.5 62,910 - ABIE53_000053 0.53 -0.6 62,910 - ABIE53_000053 0.53 -1.8 62,910 - ABIE53_000053 0.53 -1.1 62,910 - ABIE53_000053 0.53 +3.0 62,910 - ABIE53_000053 0.53 +0.1 62,917 - ABIE53_000053 0.53 -1.8 63,033 + ABIE53_000053 0.63 -1.1 63,034 - ABIE53_000053 0.63 -0.8 63,072 + ABIE53_000053 0.66 +0.3 63,072 + ABIE53_000053 0.66 +1.4 63,072 + ABIE53_000053 0.66 +0.5 63,072 + ABIE53_000053 0.66 -0.1 63,073 - ABIE53_000053 0.67 -0.1 63,073 - ABIE53_000053 0.67 +1.3 63,073 - ABIE53_000053 0.67 -0.5 63,073 - ABIE53_000053 0.67 +1.5 63,102 + ABIE53_000053 0.69 +0.5 63,102 + ABIE53_000053 0.69 +1.5 63,102 + ABIE53_000053 0.69 -1.0 63,102 + ABIE53_000053 0.69 +0.6 63,103 - ABIE53_000053 0.69 +1.4 63,103 - ABIE53_000053 0.69 -2.9 63,103 - ABIE53_000053 0.69 -1.6 63,131 + ABIE53_000053 0.72 -0.2 63,131 + ABIE53_000053 0.72 +0.7
Or see this region's nucleotide sequence