Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.773.1

Experiment: PBS control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.772.1 and Xcc-8004.773.1 are separated by 24 nucleotidesXcc-8004.773.1 and Xcc-8004.774.1 are separated by 283 nucleotides Xcc-8004.772.1: Xcc-8004.772.1 - protease, putative, at 717,098 to 718,027 Xcc-8004.772.1 Xcc-8004.773.1: Xcc-8004.773.1 - Transcriptional regulator marR family, at 718,052 to 718,591 Xcc-8004.773.1 Xcc-8004.774.1: Xcc-8004.774.1 - aminopeptidase N, at 718,875 to 720,230 Xcc-8004.774.1 Position (kb) 718 719Strain fitness (log2 ratio) -2 -1 0 1 2at 717.054 kb on + strandat 717.055 kb on - strandat 717.055 kb on - strandat 717.247 kb on + strand, within Xcc-8004.772.1at 717.248 kb on - strand, within Xcc-8004.772.1at 717.300 kb on + strand, within Xcc-8004.772.1at 717.326 kb on - strand, within Xcc-8004.772.1at 717.326 kb on - strand, within Xcc-8004.772.1at 717.616 kb on - strand, within Xcc-8004.772.1at 717.786 kb on - strand, within Xcc-8004.772.1at 718.029 kb on + strandat 718.030 kb on - strandat 718.030 kb on - strandat 718.301 kb on - strand, within Xcc-8004.773.1at 718.425 kb on + strand, within Xcc-8004.773.1at 718.426 kb on - strand, within Xcc-8004.773.1at 718.426 kb on - strand, within Xcc-8004.773.1at 718.426 kb on - strand, within Xcc-8004.773.1at 718.426 kb on - strand, within Xcc-8004.773.1at 718.458 kb on + strand, within Xcc-8004.773.1at 718.519 kb on + strand, within Xcc-8004.773.1at 718.549 kb on - strandat 718.583 kb on + strandat 718.583 kb on + strandat 718.583 kb on + strandat 718.584 kb on - strandat 718.584 kb on - strandat 718.739 kb on + strandat 718.739 kb on + strandat 718.798 kb on + strandat 718.799 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PBS control
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717,054 + +0.9
717,055 - +0.2
717,055 - +0.0
717,247 + Xcc-8004.772.1 0.16 -1.8
717,248 - Xcc-8004.772.1 0.16 -0.3
717,300 + Xcc-8004.772.1 0.22 +0.5
717,326 - Xcc-8004.772.1 0.25 +1.5
717,326 - Xcc-8004.772.1 0.25 +0.3
717,616 - Xcc-8004.772.1 0.56 +0.9
717,786 - Xcc-8004.772.1 0.74 +0.0
718,029 + -0.6
718,030 - -1.7
718,030 - +0.9
718,301 - Xcc-8004.773.1 0.46 +0.0
718,425 + Xcc-8004.773.1 0.69 -0.5
718,426 - Xcc-8004.773.1 0.69 +2.5
718,426 - Xcc-8004.773.1 0.69 -1.4
718,426 - Xcc-8004.773.1 0.69 -0.9
718,426 - Xcc-8004.773.1 0.69 -0.7
718,458 + Xcc-8004.773.1 0.75 -0.5
718,519 + Xcc-8004.773.1 0.86 +0.9
718,549 - +0.0
718,583 + +0.7
718,583 + -0.3
718,583 + +0.3
718,584 - -0.3
718,584 - -1.4
718,739 + +0.3
718,739 + +0.9
718,798 + +0.3
718,799 - -0.0

Or see this region's nucleotide sequence