Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.770.1

Experiment: PBS control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.768.1 and Xcc-8004.769.1 are separated by 93 nucleotidesXcc-8004.769.1 and Xcc-8004.770.1 are separated by 6 nucleotidesXcc-8004.770.1 and Xcc-8004.771.1 are separated by 27 nucleotidesXcc-8004.771.1 and Xcc-8004.772.1 are separated by 280 nucleotides Xcc-8004.768.1: Xcc-8004.768.1 - Glutathione S-transferase, omega (EC 2.5.1.18), at 714,733 to 715,704 Xcc-8004.768.1 Xcc-8004.769.1: Xcc-8004.769.1 - Lactoylglutathione lyase and related lyases, at 715,798 to 716,190 Xcc-8004.769.1 Xcc-8004.770.1: Xcc-8004.770.1 - hypothetical protein, at 716,197 to 716,328 Xcc-8004.770.1 Xcc-8004.771.1: Xcc-8004.771.1 - FIG01209961: hypothetical protein, at 716,356 to 716,817 Xcc-8004.771.1 Xcc-8004.772.1: Xcc-8004.772.1 - protease, putative, at 717,098 to 718,027 Xcc-8004.772.1 Position (kb) 716 717Strain fitness (log2 ratio) -2 -1 0 1 2at 715.269 kb on + strand, within Xcc-8004.768.1at 715.270 kb on - strand, within Xcc-8004.768.1at 715.313 kb on - strand, within Xcc-8004.768.1at 715.345 kb on + strand, within Xcc-8004.768.1at 715.346 kb on - strand, within Xcc-8004.768.1at 715.414 kb on + strand, within Xcc-8004.768.1at 715.415 kb on - strand, within Xcc-8004.768.1at 715.486 kb on + strand, within Xcc-8004.768.1at 715.486 kb on + strand, within Xcc-8004.768.1at 715.487 kb on - strand, within Xcc-8004.768.1at 715.561 kb on + strand, within Xcc-8004.768.1at 715.561 kb on + strand, within Xcc-8004.768.1at 715.616 kb on - strandat 715.616 kb on - strandat 715.616 kb on - strandat 715.618 kb on + strandat 715.618 kb on + strandat 715.619 kb on - strandat 715.740 kb on + strandat 715.740 kb on + strandat 715.762 kb on + strandat 715.782 kb on + strandat 715.783 kb on - strandat 715.920 kb on + strand, within Xcc-8004.769.1at 715.920 kb on + strand, within Xcc-8004.769.1at 715.920 kb on + strand, within Xcc-8004.769.1at 715.920 kb on + strand, within Xcc-8004.769.1at 715.921 kb on - strand, within Xcc-8004.769.1at 715.921 kb on - strand, within Xcc-8004.769.1at 716.085 kb on + strand, within Xcc-8004.769.1at 716.140 kb on + strand, within Xcc-8004.769.1at 716.141 kb on - strand, within Xcc-8004.769.1at 716.188 kb on + strandat 716.252 kb on - strand, within Xcc-8004.770.1at 716.252 kb on - strand, within Xcc-8004.770.1at 716.256 kb on - strand, within Xcc-8004.770.1at 716.323 kb on - strandat 716.323 kb on - strandat 716.480 kb on + strand, within Xcc-8004.771.1at 716.833 kb on + strandat 716.880 kb on + strandat 716.881 kb on - strandat 716.897 kb on + strandat 716.897 kb on + strandat 716.897 kb on + strandat 716.898 kb on - strandat 716.898 kb on - strandat 716.949 kb on + strandat 716.949 kb on + strandat 716.950 kb on - strandat 716.950 kb on - strandat 716.995 kb on - strandat 716.995 kb on - strandat 717.054 kb on + strandat 717.055 kb on - strandat 717.055 kb on - strandat 717.247 kb on + strand, within Xcc-8004.772.1at 717.248 kb on - strand, within Xcc-8004.772.1at 717.300 kb on + strand, within Xcc-8004.772.1at 717.326 kb on - strand, within Xcc-8004.772.1at 717.326 kb on - strand, within Xcc-8004.772.1

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Per-strain Table

Position Strand Gene LocusTag Fraction PBS control
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715,269 + Xcc-8004.768.1 0.55 -0.1
715,270 - Xcc-8004.768.1 0.55 -1.0
715,313 - Xcc-8004.768.1 0.60 +0.5
715,345 + Xcc-8004.768.1 0.63 +0.5
715,346 - Xcc-8004.768.1 0.63 -0.0
715,414 + Xcc-8004.768.1 0.70 +0.4
715,415 - Xcc-8004.768.1 0.70 -0.9
715,486 + Xcc-8004.768.1 0.77 -0.6
715,486 + Xcc-8004.768.1 0.77 -1.3
715,487 - Xcc-8004.768.1 0.78 -2.4
715,561 + Xcc-8004.768.1 0.85 +2.5
715,561 + Xcc-8004.768.1 0.85 -0.0
715,616 - -1.4
715,616 - +0.4
715,616 - -0.5
715,618 + +0.3
715,618 + +0.6
715,619 - -0.4
715,740 + +0.9
715,740 + -0.3
715,762 + -1.2
715,782 + -1.6
715,783 - +0.1
715,920 + Xcc-8004.769.1 0.31 -0.2
715,920 + Xcc-8004.769.1 0.31 -0.7
715,920 + Xcc-8004.769.1 0.31 -0.8
715,920 + Xcc-8004.769.1 0.31 +2.2
715,921 - Xcc-8004.769.1 0.31 -0.6
715,921 - Xcc-8004.769.1 0.31 -0.1
716,085 + Xcc-8004.769.1 0.73 -1.9
716,140 + Xcc-8004.769.1 0.87 +1.4
716,141 - Xcc-8004.769.1 0.87 -0.1
716,188 + +2.7
716,252 - Xcc-8004.770.1 0.42 +1.0
716,252 - Xcc-8004.770.1 0.42 +0.6
716,256 - Xcc-8004.770.1 0.45 +1.6
716,323 - -0.7
716,323 - -1.0
716,480 + Xcc-8004.771.1 0.27 +0.9
716,833 + -1.3
716,880 + -0.2
716,881 - -0.3
716,897 + +0.5
716,897 + +0.2
716,897 + -0.6
716,898 - -1.9
716,898 - -0.4
716,949 + -1.4
716,949 + +0.2
716,950 - -0.1
716,950 - +0.2
716,995 - +1.5
716,995 - -0.1
717,054 + +0.9
717,055 - +0.2
717,055 - +0.0
717,247 + Xcc-8004.772.1 0.16 -1.8
717,248 - Xcc-8004.772.1 0.16 -0.3
717,300 + Xcc-8004.772.1 0.22 +0.5
717,326 - Xcc-8004.772.1 0.25 +1.5
717,326 - Xcc-8004.772.1 0.25 +0.3

Or see this region's nucleotide sequence