Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.738.1

Experiment: PBS control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.736.1 and Xcc-8004.737.1 overlap by 4 nucleotidesXcc-8004.737.1 and Xcc-8004.738.1 overlap by 4 nucleotidesXcc-8004.738.1 and Xcc-8004.739.1 are separated by 2 nucleotidesXcc-8004.739.1 and Xcc-8004.740.1 overlap by 4 nucleotides Xcc-8004.736.1: Xcc-8004.736.1 - hypothetical protein, at 686,074 to 686,502 Xcc-8004.736.1 Xcc-8004.737.1: Xcc-8004.737.1 - Malonate decarboxylase beta subunit, at 686,499 to 687,413 Xcc-8004.737.1 Xcc-8004.738.1: Xcc-8004.738.1 - Malonate decarboxylase gamma subunit, at 687,410 to 688,114 Xcc-8004.738.1 Xcc-8004.739.1: Xcc-8004.739.1 - Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-), at 688,117 to 688,758 Xcc-8004.739.1 Xcc-8004.740.1: Xcc-8004.740.1 - Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25), at 688,755 to 689,921 Xcc-8004.740.1 Position (kb) 687 688 689Strain fitness (log2 ratio) -2 -1 0 1at 686.436 kb on + strand, within Xcc-8004.736.1at 686.437 kb on - strand, within Xcc-8004.736.1at 686.533 kb on - strandat 686.535 kb on + strandat 686.535 kb on + strandat 686.535 kb on + strandat 687.133 kb on - strand, within Xcc-8004.737.1at 687.686 kb on + strand, within Xcc-8004.738.1at 687.687 kb on - strand, within Xcc-8004.738.1at 687.942 kb on - strand, within Xcc-8004.738.1at 687.950 kb on - strand, within Xcc-8004.738.1at 688.501 kb on + strand, within Xcc-8004.739.1at 688.501 kb on + strand, within Xcc-8004.739.1at 688.501 kb on + strand, within Xcc-8004.739.1at 688.502 kb on - strand, within Xcc-8004.739.1at 688.502 kb on - strand, within Xcc-8004.739.1at 688.664 kb on - strand, within Xcc-8004.739.1at 688.760 kb on + strandat 688.933 kb on + strand, within Xcc-8004.740.1at 688.934 kb on - strand, within Xcc-8004.740.1at 688.962 kb on - strand, within Xcc-8004.740.1at 689.048 kb on + strand, within Xcc-8004.740.1

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Per-strain Table

Position Strand Gene LocusTag Fraction PBS control
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686,436 + Xcc-8004.736.1 0.84 -1.9
686,437 - Xcc-8004.736.1 0.85 -0.1
686,533 - -1.1
686,535 + +0.1
686,535 + -0.5
686,535 + -1.1
687,133 - Xcc-8004.737.1 0.69 -0.7
687,686 + Xcc-8004.738.1 0.39 -0.6
687,687 - Xcc-8004.738.1 0.39 -0.7
687,942 - Xcc-8004.738.1 0.75 -0.1
687,950 - Xcc-8004.738.1 0.77 -0.7
688,501 + Xcc-8004.739.1 0.60 +0.5
688,501 + Xcc-8004.739.1 0.60 +1.2
688,501 + Xcc-8004.739.1 0.60 -0.7
688,502 - Xcc-8004.739.1 0.60 +0.2
688,502 - Xcc-8004.739.1 0.60 -0.8
688,664 - Xcc-8004.739.1 0.85 -0.6
688,760 + +0.1
688,933 + Xcc-8004.740.1 0.15 -0.3
688,934 - Xcc-8004.740.1 0.15 +0.1
688,962 - Xcc-8004.740.1 0.18 -2.6
689,048 + Xcc-8004.740.1 0.25 -0.1

Or see this region's nucleotide sequence