Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.731.1

Experiment: PBS control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.729.1 and Xcc-8004.730.1 are separated by 135 nucleotidesXcc-8004.730.1 and Xcc-8004.731.1 are separated by 90 nucleotidesXcc-8004.731.1 and Xcc-8004.732.1 are separated by 428 nucleotides Xcc-8004.729.1: Xcc-8004.729.1 - DUF1022 domain-containing protein, at 679,556 to 680,503 Xcc-8004.729.1 Xcc-8004.730.1: Xcc-8004.730.1 - Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-), at 680,639 to 681,229 Xcc-8004.730.1 Xcc-8004.731.1: Xcc-8004.731.1 - hypothetical protein, at 681,320 to 682,042 Xcc-8004.731.1 Xcc-8004.732.1: Xcc-8004.732.1 - iron-chelator utilization protein, at 682,471 to 683,259 Xcc-8004.732.1 Position (kb) 681 682 683Strain fitness (log2 ratio) -2 -1 0 1 2at 680.520 kb on + strandat 680.521 kb on - strandat 680.566 kb on + strandat 680.567 kb on - strandat 680.567 kb on - strandat 680.567 kb on - strandat 680.567 kb on - strandat 680.605 kb on + strandat 680.605 kb on + strandat 680.606 kb on - strandat 680.606 kb on - strandat 680.747 kb on + strand, within Xcc-8004.730.1at 680.747 kb on + strand, within Xcc-8004.730.1at 680.747 kb on + strand, within Xcc-8004.730.1at 680.748 kb on - strand, within Xcc-8004.730.1at 680.748 kb on - strand, within Xcc-8004.730.1at 680.933 kb on + strand, within Xcc-8004.730.1at 680.934 kb on - strand, within Xcc-8004.730.1at 680.934 kb on - strand, within Xcc-8004.730.1at 681.029 kb on + strand, within Xcc-8004.730.1at 681.030 kb on - strand, within Xcc-8004.730.1at 681.030 kb on - strand, within Xcc-8004.730.1at 681.130 kb on + strand, within Xcc-8004.730.1at 681.130 kb on + strand, within Xcc-8004.730.1at 681.131 kb on - strand, within Xcc-8004.730.1at 681.334 kb on + strandat 681.335 kb on - strandat 681.335 kb on - strandat 681.335 kb on - strandat 681.335 kb on - strandat 681.518 kb on + strand, within Xcc-8004.731.1at 681.518 kb on + strand, within Xcc-8004.731.1at 681.519 kb on - strand, within Xcc-8004.731.1at 681.519 kb on - strand, within Xcc-8004.731.1at 681.620 kb on + strand, within Xcc-8004.731.1at 681.620 kb on + strand, within Xcc-8004.731.1at 681.620 kb on + strand, within Xcc-8004.731.1at 681.621 kb on - strand, within Xcc-8004.731.1at 681.621 kb on - strand, within Xcc-8004.731.1at 682.041 kb on - strandat 682.166 kb on + strandat 682.167 kb on - strandat 682.167 kb on - strandat 682.167 kb on - strandat 682.186 kb on - strandat 682.253 kb on + strandat 682.253 kb on + strandat 682.254 kb on - strandat 682.264 kb on + strandat 682.264 kb on + strandat 682.265 kb on - strandat 682.332 kb on + strandat 682.389 kb on + strandat 682.401 kb on - strandat 682.452 kb on + strandat 682.499 kb on + strandat 682.595 kb on + strand, within Xcc-8004.732.1at 682.596 kb on - strand, within Xcc-8004.732.1at 682.688 kb on + strand, within Xcc-8004.732.1at 682.689 kb on - strand, within Xcc-8004.732.1at 682.751 kb on + strand, within Xcc-8004.732.1at 682.835 kb on + strand, within Xcc-8004.732.1at 682.835 kb on + strand, within Xcc-8004.732.1at 682.835 kb on + strand, within Xcc-8004.732.1at 682.836 kb on - strand, within Xcc-8004.732.1at 682.836 kb on - strand, within Xcc-8004.732.1at 682.836 kb on - strand, within Xcc-8004.732.1at 682.988 kb on + strand, within Xcc-8004.732.1at 682.989 kb on - strand, within Xcc-8004.732.1at 683.000 kb on + strand, within Xcc-8004.732.1

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Per-strain Table

Position Strand Gene LocusTag Fraction PBS control
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680,520 + -1.2
680,521 - -0.8
680,566 + +0.5
680,567 - -0.5
680,567 - +0.2
680,567 - -0.2
680,567 - +0.9
680,605 + +1.3
680,605 + -0.9
680,606 - -0.6
680,606 - +0.2
680,747 + Xcc-8004.730.1 0.18 +0.3
680,747 + Xcc-8004.730.1 0.18 -0.8
680,747 + Xcc-8004.730.1 0.18 -0.7
680,748 - Xcc-8004.730.1 0.18 -1.6
680,748 - Xcc-8004.730.1 0.18 -0.1
680,933 + Xcc-8004.730.1 0.50 +0.9
680,934 - Xcc-8004.730.1 0.50 -1.1
680,934 - Xcc-8004.730.1 0.50 -0.7
681,029 + Xcc-8004.730.1 0.66 -0.1
681,030 - Xcc-8004.730.1 0.66 -0.5
681,030 - Xcc-8004.730.1 0.66 -1.1
681,130 + Xcc-8004.730.1 0.83 -0.4
681,130 + Xcc-8004.730.1 0.83 +0.0
681,131 - Xcc-8004.730.1 0.83 -1.8
681,334 + +0.2
681,335 - -0.1
681,335 - -1.1
681,335 - -0.0
681,335 - -0.7
681,518 + Xcc-8004.731.1 0.27 -1.6
681,518 + Xcc-8004.731.1 0.27 -1.2
681,519 - Xcc-8004.731.1 0.28 -0.7
681,519 - Xcc-8004.731.1 0.28 -2.6
681,620 + Xcc-8004.731.1 0.41 -1.8
681,620 + Xcc-8004.731.1 0.41 +0.2
681,620 + Xcc-8004.731.1 0.41 -0.6
681,621 - Xcc-8004.731.1 0.42 -0.5
681,621 - Xcc-8004.731.1 0.42 +0.4
682,041 - -1.7
682,166 + +0.7
682,167 - +1.4
682,167 - +2.7
682,167 - -0.7
682,186 - -0.1
682,253 + +0.1
682,253 + +0.9
682,254 - -1.0
682,264 + +0.4
682,264 + +0.4
682,265 - -0.6
682,332 + -1.5
682,389 + +0.1
682,401 - +0.4
682,452 + -0.1
682,499 + +0.4
682,595 + Xcc-8004.732.1 0.16 -0.1
682,596 - Xcc-8004.732.1 0.16 -1.0
682,688 + Xcc-8004.732.1 0.28 -1.1
682,689 - Xcc-8004.732.1 0.28 +1.1
682,751 + Xcc-8004.732.1 0.35 +0.9
682,835 + Xcc-8004.732.1 0.46 -2.1
682,835 + Xcc-8004.732.1 0.46 -0.7
682,835 + Xcc-8004.732.1 0.46 -0.7
682,836 - Xcc-8004.732.1 0.46 +1.2
682,836 - Xcc-8004.732.1 0.46 -1.5
682,836 - Xcc-8004.732.1 0.46 -0.1
682,988 + Xcc-8004.732.1 0.66 +0.2
682,989 - Xcc-8004.732.1 0.66 -0.2
683,000 + Xcc-8004.732.1 0.67 -1.0

Or see this region's nucleotide sequence