Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5231.1

Experiment: PBS control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5230.1 and Xcc-8004.5231.1 are separated by 364 nucleotidesXcc-8004.5231.1 and Xcc-8004.5232.1 overlap by 7 nucleotidesXcc-8004.5232.1 and Xcc-8004.5233.1 overlap by 43 nucleotides Xcc-8004.5230.1: Xcc-8004.5230.1 - Gluconolactonase (EC 3.1.1.17), at 4,966,351 to 4,967,388 Xcc-8004.5230.1 Xcc-8004.5231.1: Xcc-8004.5231.1 - hypothetical protein, at 4,967,753 to 4,967,986 Xcc-8004.5231.1 Xcc-8004.5232.1: Xcc-8004.5232.1 - hypothetical protein, at 4,967,980 to 4,968,309 Xcc-8004.5232.1 Xcc-8004.5233.1: Xcc-8004.5233.1 - hypothetical protein, at 4,968,267 to 4,969,223 Xcc-8004.5233.1 Position (kb) 4967 4968Strain fitness (log2 ratio) -2 -1 0 1 2at 4966.793 kb on + strand, within Xcc-8004.5230.1at 4967.108 kb on - strand, within Xcc-8004.5230.1at 4967.132 kb on + strand, within Xcc-8004.5230.1at 4967.132 kb on + strand, within Xcc-8004.5230.1at 4967.132 kb on + strand, within Xcc-8004.5230.1at 4967.133 kb on - strand, within Xcc-8004.5230.1at 4967.133 kb on - strand, within Xcc-8004.5230.1at 4967.133 kb on - strand, within Xcc-8004.5230.1at 4967.329 kb on - strandat 4967.391 kb on + strandat 4967.443 kb on + strandat 4967.470 kb on + strandat 4967.471 kb on - strandat 4967.477 kb on - strandat 4967.538 kb on + strandat 4967.538 kb on + strandat 4967.538 kb on + strandat 4967.539 kb on - strandat 4967.539 kb on - strandat 4967.539 kb on - strandat 4967.539 kb on - strandat 4967.565 kb on + strandat 4967.565 kb on + strandat 4967.566 kb on - strandat 4967.566 kb on - strandat 4967.613 kb on + strandat 4967.613 kb on + strandat 4967.614 kb on - strandat 4967.614 kb on - strandat 4967.614 kb on - strandat 4967.617 kb on + strandat 4967.618 kb on - strandat 4967.618 kb on - strandat 4967.618 kb on - strandat 4967.618 kb on - strandat 4967.619 kb on + strandat 4967.620 kb on - strandat 4967.620 kb on - strandat 4967.674 kb on - strandat 4967.695 kb on + strandat 4967.695 kb on + strandat 4967.695 kb on + strandat 4967.696 kb on - strandat 4967.696 kb on - strandat 4967.696 kb on - strandat 4967.696 kb on - strandat 4967.696 kb on - strandat 4967.696 kb on - strandat 4967.700 kb on + strandat 4967.727 kb on + strandat 4967.894 kb on - strand, within Xcc-8004.5231.1at 4967.927 kb on - strand, within Xcc-8004.5231.1at 4967.927 kb on - strand, within Xcc-8004.5231.1at 4967.937 kb on + strand, within Xcc-8004.5231.1at 4967.946 kb on - strand, within Xcc-8004.5231.1at 4967.975 kb on + strandat 4967.975 kb on + strandat 4968.091 kb on + strand, within Xcc-8004.5232.1at 4968.092 kb on - strand, within Xcc-8004.5232.1at 4968.092 kb on - strand, within Xcc-8004.5232.1at 4968.098 kb on + strand, within Xcc-8004.5232.1at 4968.098 kb on + strand, within Xcc-8004.5232.1at 4968.099 kb on - strand, within Xcc-8004.5232.1at 4968.230 kb on + strand, within Xcc-8004.5232.1at 4968.230 kb on + strand, within Xcc-8004.5232.1at 4968.230 kb on + strand, within Xcc-8004.5232.1at 4968.236 kb on - strand, within Xcc-8004.5232.1at 4968.244 kb on + strand, within Xcc-8004.5232.1at 4968.288 kb on + strandat 4968.288 kb on + strandat 4968.288 kb on + strandat 4968.289 kb on - strandat 4968.289 kb on - strandat 4968.290 kb on + strandat 4968.291 kb on - strandat 4968.312 kb on + strandat 4968.312 kb on + strandat 4968.312 kb on + strandat 4968.313 kb on - strandat 4968.313 kb on - strandat 4968.313 kb on - strandat 4968.400 kb on + strand, within Xcc-8004.5233.1at 4968.400 kb on + strand, within Xcc-8004.5233.1at 4968.401 kb on - strand, within Xcc-8004.5233.1at 4968.410 kb on + strand, within Xcc-8004.5233.1at 4968.412 kb on + strand, within Xcc-8004.5233.1at 4968.412 kb on + strand, within Xcc-8004.5233.1at 4968.452 kb on + strand, within Xcc-8004.5233.1at 4968.480 kb on + strand, within Xcc-8004.5233.1at 4968.480 kb on + strand, within Xcc-8004.5233.1at 4968.480 kb on + strand, within Xcc-8004.5233.1at 4968.480 kb on + strand, within Xcc-8004.5233.1at 4968.480 kb on + strand, within Xcc-8004.5233.1at 4968.481 kb on - strand, within Xcc-8004.5233.1at 4968.481 kb on - strand, within Xcc-8004.5233.1at 4968.582 kb on + strand, within Xcc-8004.5233.1at 4968.599 kb on + strand, within Xcc-8004.5233.1at 4968.600 kb on - strand, within Xcc-8004.5233.1at 4968.631 kb on + strand, within Xcc-8004.5233.1at 4968.631 kb on + strand, within Xcc-8004.5233.1at 4968.665 kb on + strand, within Xcc-8004.5233.1at 4968.666 kb on - strand, within Xcc-8004.5233.1at 4968.678 kb on + strand, within Xcc-8004.5233.1at 4968.678 kb on + strand, within Xcc-8004.5233.1at 4968.678 kb on + strand, within Xcc-8004.5233.1at 4968.678 kb on + strand, within Xcc-8004.5233.1at 4968.678 kb on + strand, within Xcc-8004.5233.1at 4968.678 kb on + strand, within Xcc-8004.5233.1at 4968.679 kb on - strand, within Xcc-8004.5233.1at 4968.679 kb on - strand, within Xcc-8004.5233.1at 4968.679 kb on - strand, within Xcc-8004.5233.1at 4968.679 kb on - strand, within Xcc-8004.5233.1at 4968.731 kb on + strand, within Xcc-8004.5233.1at 4968.731 kb on + strand, within Xcc-8004.5233.1at 4968.735 kb on + strand, within Xcc-8004.5233.1at 4968.736 kb on - strand, within Xcc-8004.5233.1at 4968.741 kb on + strand, within Xcc-8004.5233.1at 4968.903 kb on + strand, within Xcc-8004.5233.1at 4968.980 kb on - strand, within Xcc-8004.5233.1

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Per-strain Table

Position Strand Gene LocusTag Fraction PBS control
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4,966,793 + Xcc-8004.5230.1 0.43 +0.4
4,967,108 - Xcc-8004.5230.1 0.73 +0.4
4,967,132 + Xcc-8004.5230.1 0.75 +2.5
4,967,132 + Xcc-8004.5230.1 0.75 -0.1
4,967,132 + Xcc-8004.5230.1 0.75 +1.0
4,967,133 - Xcc-8004.5230.1 0.75 -2.0
4,967,133 - Xcc-8004.5230.1 0.75 -1.2
4,967,133 - Xcc-8004.5230.1 0.75 -0.8
4,967,329 - +0.4
4,967,391 + +0.2
4,967,443 + -0.2
4,967,470 + -0.0
4,967,471 - +0.5
4,967,477 - -2.6
4,967,538 + -0.4
4,967,538 + -0.6
4,967,538 + -1.0
4,967,539 - -0.4
4,967,539 - +2.5
4,967,539 - +1.5
4,967,539 - +0.4
4,967,565 + -0.0
4,967,565 + -1.4
4,967,566 - -0.0
4,967,566 - -0.3
4,967,613 + +0.8
4,967,613 + -2.6
4,967,614 - -1.0
4,967,614 - -0.4
4,967,614 - +1.5
4,967,617 + -2.2
4,967,618 - -0.4
4,967,618 - -0.4
4,967,618 - +0.2
4,967,618 - -2.7
4,967,619 + -0.4
4,967,620 - +0.6
4,967,620 - +1.0
4,967,674 - -1.1
4,967,695 + +2.0
4,967,695 + +0.1
4,967,695 + -0.8
4,967,696 - -0.0
4,967,696 - +1.2
4,967,696 - -0.6
4,967,696 - -0.4
4,967,696 - -0.4
4,967,696 - +0.1
4,967,700 + -0.2
4,967,727 + +1.4
4,967,894 - Xcc-8004.5231.1 0.60 -1.1
4,967,927 - Xcc-8004.5231.1 0.74 -1.2
4,967,927 - Xcc-8004.5231.1 0.74 -0.2
4,967,937 + Xcc-8004.5231.1 0.79 -2.1
4,967,946 - Xcc-8004.5231.1 0.82 -0.1
4,967,975 + +1.0
4,967,975 + -1.1
4,968,091 + Xcc-8004.5232.1 0.34 +0.2
4,968,092 - Xcc-8004.5232.1 0.34 -0.4
4,968,092 - Xcc-8004.5232.1 0.34 -0.5
4,968,098 + Xcc-8004.5232.1 0.36 +1.0
4,968,098 + Xcc-8004.5232.1 0.36 +0.1
4,968,099 - Xcc-8004.5232.1 0.36 +0.3
4,968,230 + Xcc-8004.5232.1 0.76 -1.0
4,968,230 + Xcc-8004.5232.1 0.76 +1.1
4,968,230 + Xcc-8004.5232.1 0.76 +1.0
4,968,236 - Xcc-8004.5232.1 0.78 +0.1
4,968,244 + Xcc-8004.5232.1 0.80 +1.0
4,968,288 + +1.0
4,968,288 + -0.6
4,968,288 + -1.3
4,968,289 - -0.0
4,968,289 - -1.6
4,968,290 + -0.2
4,968,291 - +0.2
4,968,312 + +0.2
4,968,312 + -1.8
4,968,312 + -0.0
4,968,313 - -2.2
4,968,313 - +0.4
4,968,313 - +2.1
4,968,400 + Xcc-8004.5233.1 0.14 +1.0
4,968,400 + Xcc-8004.5233.1 0.14 +0.6
4,968,401 - Xcc-8004.5233.1 0.14 +0.3
4,968,410 + Xcc-8004.5233.1 0.15 -1.0
4,968,412 + Xcc-8004.5233.1 0.15 -0.8
4,968,412 + Xcc-8004.5233.1 0.15 -0.3
4,968,452 + Xcc-8004.5233.1 0.19 -0.0
4,968,480 + Xcc-8004.5233.1 0.22 -2.4
4,968,480 + Xcc-8004.5233.1 0.22 -0.0
4,968,480 + Xcc-8004.5233.1 0.22 +1.0
4,968,480 + Xcc-8004.5233.1 0.22 -0.4
4,968,480 + Xcc-8004.5233.1 0.22 -1.2
4,968,481 - Xcc-8004.5233.1 0.22 -0.5
4,968,481 - Xcc-8004.5233.1 0.22 +0.5
4,968,582 + Xcc-8004.5233.1 0.33 -1.7
4,968,599 + Xcc-8004.5233.1 0.35 -0.3
4,968,600 - Xcc-8004.5233.1 0.35 +0.5
4,968,631 + Xcc-8004.5233.1 0.38 -0.7
4,968,631 + Xcc-8004.5233.1 0.38 -0.8
4,968,665 + Xcc-8004.5233.1 0.42 +0.8
4,968,666 - Xcc-8004.5233.1 0.42 -0.6
4,968,678 + Xcc-8004.5233.1 0.43 -0.0
4,968,678 + Xcc-8004.5233.1 0.43 -0.2
4,968,678 + Xcc-8004.5233.1 0.43 -0.4
4,968,678 + Xcc-8004.5233.1 0.43 +0.5
4,968,678 + Xcc-8004.5233.1 0.43 +2.4
4,968,678 + Xcc-8004.5233.1 0.43 -0.9
4,968,679 - Xcc-8004.5233.1 0.43 +0.8
4,968,679 - Xcc-8004.5233.1 0.43 +0.5
4,968,679 - Xcc-8004.5233.1 0.43 +1.0
4,968,679 - Xcc-8004.5233.1 0.43 -0.6
4,968,731 + Xcc-8004.5233.1 0.48 -1.2
4,968,731 + Xcc-8004.5233.1 0.48 +1.4
4,968,735 + Xcc-8004.5233.1 0.49 +2.0
4,968,736 - Xcc-8004.5233.1 0.49 +0.7
4,968,741 + Xcc-8004.5233.1 0.50 +1.1
4,968,903 + Xcc-8004.5233.1 0.66 -0.6
4,968,980 - Xcc-8004.5233.1 0.75 -1.6

Or see this region's nucleotide sequence