Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.51.1

Experiment: PBS control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.49.1 and Xcc-8004.50.1 are separated by 234 nucleotidesXcc-8004.50.1 and Xcc-8004.51.1 are separated by 8 nucleotidesXcc-8004.51.1 and Xcc-8004.52.1 are separated by 344 nucleotides Xcc-8004.49.1: Xcc-8004.49.1 - Pirin-related protein, at 48,574 to 49,464 Xcc-8004.49.1 Xcc-8004.50.1: Xcc-8004.50.1 - FMN-dependent NADH-azoreductase, at 49,699 to 50,013 Xcc-8004.50.1 Xcc-8004.51.1: Xcc-8004.51.1 - FMN-dependent NADH-azoreductase, at 50,022 to 50,402 Xcc-8004.51.1 Xcc-8004.52.1: Xcc-8004.52.1 - transcriptional regulator lysR family, at 50,747 to 51,640 Xcc-8004.52.1 Position (kb) 50 51Strain fitness (log2 ratio) -2 -1 0 1 2at 49.030 kb on + strand, within Xcc-8004.49.1at 49.030 kb on + strand, within Xcc-8004.49.1at 49.030 kb on + strand, within Xcc-8004.49.1at 49.030 kb on + strand, within Xcc-8004.49.1at 49.030 kb on + strand, within Xcc-8004.49.1at 49.031 kb on - strand, within Xcc-8004.49.1at 49.031 kb on - strand, within Xcc-8004.49.1at 49.031 kb on - strand, within Xcc-8004.49.1at 49.031 kb on - strand, within Xcc-8004.49.1at 49.031 kb on - strand, within Xcc-8004.49.1at 49.031 kb on - strand, within Xcc-8004.49.1at 49.031 kb on - strand, within Xcc-8004.49.1at 49.031 kb on - strand, within Xcc-8004.49.1at 49.031 kb on - strand, within Xcc-8004.49.1at 49.031 kb on - strand, within Xcc-8004.49.1at 49.031 kb on - strand, within Xcc-8004.49.1at 49.087 kb on + strand, within Xcc-8004.49.1at 49.088 kb on - strand, within Xcc-8004.49.1at 49.132 kb on + strand, within Xcc-8004.49.1at 49.132 kb on + strand, within Xcc-8004.49.1at 49.132 kb on + strand, within Xcc-8004.49.1at 49.132 kb on + strand, within Xcc-8004.49.1at 49.133 kb on - strand, within Xcc-8004.49.1at 49.133 kb on - strand, within Xcc-8004.49.1at 49.133 kb on - strand, within Xcc-8004.49.1at 49.133 kb on - strand, within Xcc-8004.49.1at 49.133 kb on - strand, within Xcc-8004.49.1at 49.133 kb on - strand, within Xcc-8004.49.1at 49.133 kb on - strand, within Xcc-8004.49.1at 49.171 kb on + strand, within Xcc-8004.49.1at 49.171 kb on + strand, within Xcc-8004.49.1at 49.171 kb on + strand, within Xcc-8004.49.1at 49.369 kb on + strand, within Xcc-8004.49.1at 49.370 kb on - strand, within Xcc-8004.49.1at 49.614 kb on + strandat 49.614 kb on + strandat 49.614 kb on + strandat 49.614 kb on + strandat 49.615 kb on - strandat 49.615 kb on - strandat 49.615 kb on - strandat 49.897 kb on + strand, within Xcc-8004.50.1at 49.897 kb on + strand, within Xcc-8004.50.1at 49.897 kb on + strand, within Xcc-8004.50.1at 49.897 kb on + strand, within Xcc-8004.50.1at 49.897 kb on + strand, within Xcc-8004.50.1at 49.897 kb on + strand, within Xcc-8004.50.1at 49.897 kb on + strand, within Xcc-8004.50.1at 49.897 kb on + strand, within Xcc-8004.50.1at 49.897 kb on + strand, within Xcc-8004.50.1at 49.898 kb on - strand, within Xcc-8004.50.1at 49.898 kb on - strand, within Xcc-8004.50.1at 49.898 kb on - strand, within Xcc-8004.50.1at 49.898 kb on - strand, within Xcc-8004.50.1at 49.898 kb on - strand, within Xcc-8004.50.1at 49.903 kb on + strand, within Xcc-8004.50.1at 49.904 kb on - strand, within Xcc-8004.50.1at 49.904 kb on - strand, within Xcc-8004.50.1at 50.011 kb on + strandat 50.073 kb on + strand, within Xcc-8004.51.1at 50.073 kb on + strand, within Xcc-8004.51.1at 50.073 kb on + strand, within Xcc-8004.51.1at 50.073 kb on + strand, within Xcc-8004.51.1at 50.074 kb on - strand, within Xcc-8004.51.1at 50.074 kb on - strand, within Xcc-8004.51.1at 50.074 kb on - strand, within Xcc-8004.51.1at 50.145 kb on + strand, within Xcc-8004.51.1at 50.145 kb on + strand, within Xcc-8004.51.1at 50.145 kb on + strand, within Xcc-8004.51.1at 50.145 kb on + strand, within Xcc-8004.51.1at 50.145 kb on + strand, within Xcc-8004.51.1at 50.145 kb on + strand, within Xcc-8004.51.1at 50.145 kb on + strand, within Xcc-8004.51.1at 50.146 kb on - strand, within Xcc-8004.51.1at 50.265 kb on + strand, within Xcc-8004.51.1at 50.265 kb on + strand, within Xcc-8004.51.1at 50.265 kb on + strand, within Xcc-8004.51.1at 50.265 kb on + strand, within Xcc-8004.51.1at 50.265 kb on + strand, within Xcc-8004.51.1at 50.265 kb on + strand, within Xcc-8004.51.1at 50.266 kb on - strand, within Xcc-8004.51.1at 50.266 kb on - strand, within Xcc-8004.51.1at 50.266 kb on - strand, within Xcc-8004.51.1at 50.266 kb on - strand, within Xcc-8004.51.1at 50.266 kb on - strand, within Xcc-8004.51.1at 50.266 kb on - strand, within Xcc-8004.51.1at 50.266 kb on - strand, within Xcc-8004.51.1at 50.456 kb on - strandat 50.530 kb on + strandat 50.530 kb on + strandat 50.547 kb on + strandat 50.620 kb on + strandat 50.621 kb on - strandat 50.626 kb on + strandat 50.626 kb on + strandat 50.665 kb on + strandat 50.675 kb on + strandat 50.675 kb on + strandat 50.721 kb on + strandat 50.722 kb on - strandat 50.722 kb on - strandat 50.722 kb on - strandat 50.722 kb on - strandat 50.722 kb on - strandat 50.722 kb on - strandat 50.748 kb on + strandat 50.748 kb on + strandat 50.749 kb on - strandat 50.783 kb on - strandat 50.823 kb on + strandat 50.823 kb on + strandat 50.824 kb on - strandat 50.957 kb on + strand, within Xcc-8004.52.1at 50.957 kb on + strand, within Xcc-8004.52.1at 50.958 kb on - strand, within Xcc-8004.52.1at 50.958 kb on - strand, within Xcc-8004.52.1at 50.958 kb on - strand, within Xcc-8004.52.1at 50.971 kb on + strand, within Xcc-8004.52.1at 50.971 kb on + strand, within Xcc-8004.52.1at 50.972 kb on - strand, within Xcc-8004.52.1at 50.972 kb on - strand, within Xcc-8004.52.1at 51.026 kb on + strand, within Xcc-8004.52.1at 51.026 kb on + strand, within Xcc-8004.52.1at 51.026 kb on + strand, within Xcc-8004.52.1at 51.026 kb on + strand, within Xcc-8004.52.1at 51.026 kb on + strand, within Xcc-8004.52.1at 51.027 kb on - strand, within Xcc-8004.52.1at 51.027 kb on - strand, within Xcc-8004.52.1at 51.127 kb on - strand, within Xcc-8004.52.1at 51.183 kb on + strand, within Xcc-8004.52.1at 51.183 kb on + strand, within Xcc-8004.52.1at 51.183 kb on + strand, within Xcc-8004.52.1at 51.183 kb on + strand, within Xcc-8004.52.1at 51.184 kb on - strand, within Xcc-8004.52.1at 51.184 kb on - strand, within Xcc-8004.52.1at 51.184 kb on - strand, within Xcc-8004.52.1at 51.184 kb on - strand, within Xcc-8004.52.1

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Per-strain Table

Position Strand Gene LocusTag Fraction PBS control
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49,030 + Xcc-8004.49.1 0.51 +0.5
49,030 + Xcc-8004.49.1 0.51 -0.6
49,030 + Xcc-8004.49.1 0.51 -1.1
49,030 + Xcc-8004.49.1 0.51 +0.3
49,030 + Xcc-8004.49.1 0.51 -0.3
49,031 - Xcc-8004.49.1 0.51 -0.4
49,031 - Xcc-8004.49.1 0.51 +0.1
49,031 - Xcc-8004.49.1 0.51 -0.1
49,031 - Xcc-8004.49.1 0.51 +0.0
49,031 - Xcc-8004.49.1 0.51 +0.3
49,031 - Xcc-8004.49.1 0.51 +0.7
49,031 - Xcc-8004.49.1 0.51 -0.1
49,031 - Xcc-8004.49.1 0.51 +0.1
49,031 - Xcc-8004.49.1 0.51 +0.2
49,031 - Xcc-8004.49.1 0.51 +0.5
49,031 - Xcc-8004.49.1 0.51 +0.8
49,087 + Xcc-8004.49.1 0.58 -0.6
49,088 - Xcc-8004.49.1 0.58 -0.7
49,132 + Xcc-8004.49.1 0.63 +0.4
49,132 + Xcc-8004.49.1 0.63 -0.0
49,132 + Xcc-8004.49.1 0.63 +0.1
49,132 + Xcc-8004.49.1 0.63 +0.7
49,133 - Xcc-8004.49.1 0.63 -0.1
49,133 - Xcc-8004.49.1 0.63 +0.0
49,133 - Xcc-8004.49.1 0.63 -0.4
49,133 - Xcc-8004.49.1 0.63 +0.2
49,133 - Xcc-8004.49.1 0.63 +0.9
49,133 - Xcc-8004.49.1 0.63 -0.8
49,133 - Xcc-8004.49.1 0.63 -1.1
49,171 + Xcc-8004.49.1 0.67 -2.1
49,171 + Xcc-8004.49.1 0.67 -0.6
49,171 + Xcc-8004.49.1 0.67 -0.7
49,369 + Xcc-8004.49.1 0.89 +0.4
49,370 - Xcc-8004.49.1 0.89 +0.7
49,614 + +0.3
49,614 + -1.0
49,614 + -1.0
49,614 + +0.0
49,615 - +0.1
49,615 - -0.9
49,615 - -1.7
49,897 + Xcc-8004.50.1 0.63 +0.4
49,897 + Xcc-8004.50.1 0.63 +0.9
49,897 + Xcc-8004.50.1 0.63 -0.1
49,897 + Xcc-8004.50.1 0.63 +1.7
49,897 + Xcc-8004.50.1 0.63 -0.4
49,897 + Xcc-8004.50.1 0.63 +1.9
49,897 + Xcc-8004.50.1 0.63 -0.7
49,897 + Xcc-8004.50.1 0.63 -1.0
49,897 + Xcc-8004.50.1 0.63 +0.9
49,898 - Xcc-8004.50.1 0.63 +1.0
49,898 - Xcc-8004.50.1 0.63 -1.6
49,898 - Xcc-8004.50.1 0.63 -1.7
49,898 - Xcc-8004.50.1 0.63 -0.7
49,898 - Xcc-8004.50.1 0.63 +0.9
49,903 + Xcc-8004.50.1 0.65 -0.4
49,904 - Xcc-8004.50.1 0.65 -0.6
49,904 - Xcc-8004.50.1 0.65 +0.9
50,011 + -1.3
50,073 + Xcc-8004.51.1 0.13 +1.0
50,073 + Xcc-8004.51.1 0.13 +0.2
50,073 + Xcc-8004.51.1 0.13 +0.3
50,073 + Xcc-8004.51.1 0.13 +0.5
50,074 - Xcc-8004.51.1 0.14 -1.7
50,074 - Xcc-8004.51.1 0.14 -0.1
50,074 - Xcc-8004.51.1 0.14 -2.0
50,145 + Xcc-8004.51.1 0.32 +0.0
50,145 + Xcc-8004.51.1 0.32 -2.1
50,145 + Xcc-8004.51.1 0.32 -2.5
50,145 + Xcc-8004.51.1 0.32 -0.5
50,145 + Xcc-8004.51.1 0.32 -1.7
50,145 + Xcc-8004.51.1 0.32 -0.2
50,145 + Xcc-8004.51.1 0.32 -0.1
50,146 - Xcc-8004.51.1 0.33 -0.4
50,265 + Xcc-8004.51.1 0.64 +0.9
50,265 + Xcc-8004.51.1 0.64 +0.1
50,265 + Xcc-8004.51.1 0.64 -0.4
50,265 + Xcc-8004.51.1 0.64 +0.9
50,265 + Xcc-8004.51.1 0.64 -0.1
50,265 + Xcc-8004.51.1 0.64 +0.3
50,266 - Xcc-8004.51.1 0.64 -0.5
50,266 - Xcc-8004.51.1 0.64 -1.0
50,266 - Xcc-8004.51.1 0.64 -0.1
50,266 - Xcc-8004.51.1 0.64 -1.4
50,266 - Xcc-8004.51.1 0.64 -2.3
50,266 - Xcc-8004.51.1 0.64 +0.0
50,266 - Xcc-8004.51.1 0.64 -1.1
50,456 - -1.6
50,530 + +0.2
50,530 + +0.9
50,547 + +0.0
50,620 + -1.7
50,621 - +0.0
50,626 + +0.6
50,626 + -0.1
50,665 + +0.4
50,675 + -0.3
50,675 + -1.1
50,721 + +1.9
50,722 - -0.3
50,722 - -0.1
50,722 - -0.0
50,722 - +0.0
50,722 - -1.0
50,722 - +0.1
50,748 + +0.9
50,748 + -0.5
50,749 - -0.6
50,783 - -0.0
50,823 + +0.6
50,823 + -0.7
50,824 - +0.5
50,957 + Xcc-8004.52.1 0.23 +0.3
50,957 + Xcc-8004.52.1 0.23 -0.7
50,958 - Xcc-8004.52.1 0.24 -0.5
50,958 - Xcc-8004.52.1 0.24 -0.1
50,958 - Xcc-8004.52.1 0.24 +1.9
50,971 + Xcc-8004.52.1 0.25 +0.5
50,971 + Xcc-8004.52.1 0.25 +1.6
50,972 - Xcc-8004.52.1 0.25 +0.6
50,972 - Xcc-8004.52.1 0.25 +0.3
51,026 + Xcc-8004.52.1 0.31 -1.7
51,026 + Xcc-8004.52.1 0.31 -0.6
51,026 + Xcc-8004.52.1 0.31 +0.4
51,026 + Xcc-8004.52.1 0.31 -0.0
51,026 + Xcc-8004.52.1 0.31 +0.1
51,027 - Xcc-8004.52.1 0.31 +1.0
51,027 - Xcc-8004.52.1 0.31 -0.1
51,127 - Xcc-8004.52.1 0.43 -0.3
51,183 + Xcc-8004.52.1 0.49 +0.4
51,183 + Xcc-8004.52.1 0.49 -1.0
51,183 + Xcc-8004.52.1 0.49 +0.3
51,183 + Xcc-8004.52.1 0.49 -1.5
51,184 - Xcc-8004.52.1 0.49 -0.2
51,184 - Xcc-8004.52.1 0.49 +0.0
51,184 - Xcc-8004.52.1 0.49 -0.2
51,184 - Xcc-8004.52.1 0.49 +2.6

Or see this region's nucleotide sequence