Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.391.1

Experiment: PBS control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.390.1 and Xcc-8004.391.1 are separated by 609 nucleotidesXcc-8004.391.1 and Xcc-8004.392.1 are separated by 69 nucleotides Xcc-8004.390.1: Xcc-8004.390.1 - hypothetical protein, at 374,219 to 375,865 Xcc-8004.390.1 Xcc-8004.391.1: Xcc-8004.391.1 - NAD-dependent protein deacetylase of SIR2 family, at 376,475 to 377,356 Xcc-8004.391.1 Xcc-8004.392.1: Xcc-8004.392.1 - FMN oxidoreductase, at 377,426 to 378,535 Xcc-8004.392.1 Position (kb) 376 377 378Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 375.517 kb on - strand, within Xcc-8004.390.1at 375.640 kb on - strand, within Xcc-8004.390.1at 375.640 kb on - strand, within Xcc-8004.390.1at 375.640 kb on - strand, within Xcc-8004.390.1at 375.640 kb on - strand, within Xcc-8004.390.1at 375.902 kb on + strandat 375.902 kb on + strandat 375.902 kb on + strandat 375.903 kb on - strandat 375.903 kb on - strandat 375.903 kb on - strandat 375.903 kb on - strandat 375.903 kb on - strandat 375.903 kb on - strandat 375.970 kb on + strandat 375.970 kb on + strandat 375.970 kb on + strandat 375.970 kb on + strandat 375.970 kb on + strandat 375.970 kb on + strandat 375.970 kb on + strandat 375.971 kb on - strandat 375.971 kb on - strandat 375.971 kb on - strandat 375.981 kb on + strandat 376.270 kb on + strandat 376.270 kb on + strandat 376.270 kb on + strandat 376.270 kb on + strandat 376.270 kb on + strandat 376.270 kb on + strandat 376.271 kb on - strandat 376.271 kb on - strandat 376.271 kb on - strandat 376.271 kb on - strandat 376.271 kb on - strandat 376.271 kb on - strandat 376.358 kb on + strandat 376.359 kb on - strandat 376.545 kb on + strandat 376.546 kb on - strandat 376.546 kb on - strandat 376.653 kb on - strand, within Xcc-8004.391.1at 376.653 kb on - strand, within Xcc-8004.391.1at 376.653 kb on - strand, within Xcc-8004.391.1at 377.147 kb on + strand, within Xcc-8004.391.1at 377.147 kb on + strand, within Xcc-8004.391.1at 377.147 kb on + strand, within Xcc-8004.391.1at 377.147 kb on + strand, within Xcc-8004.391.1at 377.147 kb on + strand, within Xcc-8004.391.1at 377.156 kb on + strand, within Xcc-8004.391.1at 377.157 kb on - strand, within Xcc-8004.391.1at 377.157 kb on - strand, within Xcc-8004.391.1at 377.157 kb on - strand, within Xcc-8004.391.1at 377.157 kb on - strand, within Xcc-8004.391.1at 377.333 kb on + strandat 377.334 kb on - strandat 377.334 kb on - strandat 377.416 kb on + strandat 377.416 kb on + strandat 377.417 kb on - strandat 377.417 kb on - strandat 377.417 kb on - strandat 377.417 kb on - strandat 377.517 kb on - strandat 377.632 kb on + strand, within Xcc-8004.392.1at 377.633 kb on - strand, within Xcc-8004.392.1at 377.633 kb on - strand, within Xcc-8004.392.1at 377.633 kb on - strand, within Xcc-8004.392.1at 377.639 kb on + strand, within Xcc-8004.392.1at 377.639 kb on + strand, within Xcc-8004.392.1at 377.657 kb on + strand, within Xcc-8004.392.1at 377.657 kb on + strand, within Xcc-8004.392.1at 377.657 kb on + strand, within Xcc-8004.392.1at 377.657 kb on + strand, within Xcc-8004.392.1at 377.658 kb on - strand, within Xcc-8004.392.1at 378.035 kb on + strand, within Xcc-8004.392.1at 378.036 kb on - strand, within Xcc-8004.392.1at 378.218 kb on + strand, within Xcc-8004.392.1at 378.218 kb on + strand, within Xcc-8004.392.1at 378.218 kb on + strand, within Xcc-8004.392.1at 378.218 kb on + strand, within Xcc-8004.392.1at 378.218 kb on + strand, within Xcc-8004.392.1at 378.219 kb on - strand, within Xcc-8004.392.1at 378.219 kb on - strand, within Xcc-8004.392.1at 378.219 kb on - strand, within Xcc-8004.392.1at 378.219 kb on - strand, within Xcc-8004.392.1at 378.219 kb on - strand, within Xcc-8004.392.1at 378.219 kb on - strand, within Xcc-8004.392.1at 378.279 kb on - strand, within Xcc-8004.392.1at 378.279 kb on - strand, within Xcc-8004.392.1at 378.285 kb on + strand, within Xcc-8004.392.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PBS control
remove
375,517 - Xcc-8004.390.1 0.79 +0.3
375,640 - Xcc-8004.390.1 0.86 -1.5
375,640 - Xcc-8004.390.1 0.86 +1.2
375,640 - Xcc-8004.390.1 0.86 -1.5
375,640 - Xcc-8004.390.1 0.86 -0.7
375,902 + +2.2
375,902 + +0.1
375,902 + +1.0
375,903 - +0.8
375,903 - -0.5
375,903 - +0.3
375,903 - -2.2
375,903 - -0.2
375,903 - -1.3
375,970 + -1.9
375,970 + +0.0
375,970 + -1.7
375,970 + +0.1
375,970 + +0.8
375,970 + -3.0
375,970 + -1.7
375,971 - -0.0
375,971 - -2.3
375,971 - +0.5
375,981 + +1.4
376,270 + +0.7
376,270 + -0.0
376,270 + -1.4
376,270 + +0.4
376,270 + +2.2
376,270 + +0.1
376,271 - -0.7
376,271 - +0.4
376,271 - +0.3
376,271 - -1.2
376,271 - +0.6
376,271 - +0.4
376,358 + -1.7
376,359 - -0.4
376,545 + +0.3
376,546 - -1.7
376,546 - -1.2
376,653 - Xcc-8004.391.1 0.20 +0.8
376,653 - Xcc-8004.391.1 0.20 -0.7
376,653 - Xcc-8004.391.1 0.20 -0.9
377,147 + Xcc-8004.391.1 0.76 -1.2
377,147 + Xcc-8004.391.1 0.76 -1.5
377,147 + Xcc-8004.391.1 0.76 +0.3
377,147 + Xcc-8004.391.1 0.76 -2.2
377,147 + Xcc-8004.391.1 0.76 -1.5
377,156 + Xcc-8004.391.1 0.77 +0.1
377,157 - Xcc-8004.391.1 0.77 -0.2
377,157 - Xcc-8004.391.1 0.77 -1.2
377,157 - Xcc-8004.391.1 0.77 -0.2
377,157 - Xcc-8004.391.1 0.77 -0.6
377,333 + +0.0
377,334 - -0.7
377,334 - -2.3
377,416 + +0.5
377,416 + +0.4
377,417 - +0.1
377,417 - -0.9
377,417 - -0.6
377,417 - +0.1
377,517 - +1.0
377,632 + Xcc-8004.392.1 0.19 +0.1
377,633 - Xcc-8004.392.1 0.19 -1.0
377,633 - Xcc-8004.392.1 0.19 -0.4
377,633 - Xcc-8004.392.1 0.19 +0.5
377,639 + Xcc-8004.392.1 0.19 +0.6
377,639 + Xcc-8004.392.1 0.19 +0.5
377,657 + Xcc-8004.392.1 0.21 -0.7
377,657 + Xcc-8004.392.1 0.21 +0.1
377,657 + Xcc-8004.392.1 0.21 +0.6
377,657 + Xcc-8004.392.1 0.21 -2.7
377,658 - Xcc-8004.392.1 0.21 +0.0
378,035 + Xcc-8004.392.1 0.55 -0.2
378,036 - Xcc-8004.392.1 0.55 -0.5
378,218 + Xcc-8004.392.1 0.71 -1.6
378,218 + Xcc-8004.392.1 0.71 -2.0
378,218 + Xcc-8004.392.1 0.71 +0.8
378,218 + Xcc-8004.392.1 0.71 +0.6
378,218 + Xcc-8004.392.1 0.71 -0.3
378,219 - Xcc-8004.392.1 0.71 -0.0
378,219 - Xcc-8004.392.1 0.71 +0.3
378,219 - Xcc-8004.392.1 0.71 -0.0
378,219 - Xcc-8004.392.1 0.71 +0.0
378,219 - Xcc-8004.392.1 0.71 +0.8
378,219 - Xcc-8004.392.1 0.71 +0.0
378,279 - Xcc-8004.392.1 0.77 -0.5
378,279 - Xcc-8004.392.1 0.77 -0.0
378,285 + Xcc-8004.392.1 0.77 +0.5

Or see this region's nucleotide sequence