Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3869.1

Experiment: PBS control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3868.1 and Xcc-8004.3869.1 are separated by 100 nucleotidesXcc-8004.3869.1 and Xcc-8004.3870.1 overlap by 4 nucleotides Xcc-8004.3868.1: Xcc-8004.3868.1 - Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB, at 3,734,041 to 3,735,945 Xcc-8004.3868.1 Xcc-8004.3869.1: Xcc-8004.3869.1 - FIG01211837: hypothetical protein, at 3,736,046 to 3,736,816 Xcc-8004.3869.1 Xcc-8004.3870.1: Xcc-8004.3870.1 - Inner membrane protein, at 3,736,813 to 3,738,468 Xcc-8004.3870.1 Position (kb) 3736 3737Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3735.214 kb on + strand, within Xcc-8004.3868.1at 3735.214 kb on + strand, within Xcc-8004.3868.1at 3735.215 kb on - strand, within Xcc-8004.3868.1at 3735.310 kb on + strand, within Xcc-8004.3868.1at 3735.311 kb on - strand, within Xcc-8004.3868.1at 3735.311 kb on - strand, within Xcc-8004.3868.1at 3735.443 kb on + strand, within Xcc-8004.3868.1at 3735.443 kb on + strand, within Xcc-8004.3868.1at 3735.444 kb on - strand, within Xcc-8004.3868.1at 3735.444 kb on - strand, within Xcc-8004.3868.1at 3735.444 kb on - strand, within Xcc-8004.3868.1at 3735.574 kb on + strand, within Xcc-8004.3868.1at 3735.574 kb on + strand, within Xcc-8004.3868.1at 3735.574 kb on + strand, within Xcc-8004.3868.1at 3735.575 kb on - strand, within Xcc-8004.3868.1at 3735.575 kb on - strand, within Xcc-8004.3868.1at 3735.575 kb on - strand, within Xcc-8004.3868.1at 3735.576 kb on + strand, within Xcc-8004.3868.1at 3735.576 kb on + strand, within Xcc-8004.3868.1at 3735.576 kb on + strand, within Xcc-8004.3868.1at 3735.576 kb on + strand, within Xcc-8004.3868.1at 3735.576 kb on + strand, within Xcc-8004.3868.1at 3735.576 kb on + strand, within Xcc-8004.3868.1at 3735.576 kb on + strand, within Xcc-8004.3868.1at 3735.576 kb on + strand, within Xcc-8004.3868.1at 3735.576 kb on + strand, within Xcc-8004.3868.1at 3735.576 kb on + strand, within Xcc-8004.3868.1at 3735.576 kb on + strand, within Xcc-8004.3868.1at 3735.576 kb on + strand, within Xcc-8004.3868.1at 3735.576 kb on + strand, within Xcc-8004.3868.1at 3735.576 kb on + strand, within Xcc-8004.3868.1at 3735.577 kb on - strand, within Xcc-8004.3868.1at 3735.577 kb on - strand, within Xcc-8004.3868.1at 3735.577 kb on - strand, within Xcc-8004.3868.1at 3735.577 kb on - strand, within Xcc-8004.3868.1at 3735.577 kb on - strand, within Xcc-8004.3868.1at 3735.577 kb on - strand, within Xcc-8004.3868.1at 3735.577 kb on - strand, within Xcc-8004.3868.1at 3735.962 kb on + strandat 3736.209 kb on - strand, within Xcc-8004.3869.1at 3736.209 kb on - strand, within Xcc-8004.3869.1at 3736.209 kb on - strand, within Xcc-8004.3869.1at 3736.382 kb on + strand, within Xcc-8004.3869.1at 3736.383 kb on - strand, within Xcc-8004.3869.1at 3736.383 kb on - strand, within Xcc-8004.3869.1at 3736.473 kb on - strand, within Xcc-8004.3869.1at 3736.565 kb on + strand, within Xcc-8004.3869.1at 3736.583 kb on + strand, within Xcc-8004.3869.1at 3736.584 kb on - strand, within Xcc-8004.3869.1at 3736.584 kb on - strand, within Xcc-8004.3869.1at 3736.584 kb on - strand, within Xcc-8004.3869.1at 3736.665 kb on + strand, within Xcc-8004.3869.1at 3736.665 kb on + strand, within Xcc-8004.3869.1at 3736.749 kb on - strandat 3737.116 kb on + strand, within Xcc-8004.3870.1at 3737.116 kb on + strand, within Xcc-8004.3870.1at 3737.116 kb on + strand, within Xcc-8004.3870.1at 3737.116 kb on + strand, within Xcc-8004.3870.1at 3737.116 kb on + strand, within Xcc-8004.3870.1at 3737.117 kb on - strand, within Xcc-8004.3870.1at 3737.117 kb on - strand, within Xcc-8004.3870.1at 3737.117 kb on - strand, within Xcc-8004.3870.1at 3737.117 kb on - strand, within Xcc-8004.3870.1at 3737.128 kb on + strand, within Xcc-8004.3870.1at 3737.128 kb on + strand, within Xcc-8004.3870.1at 3737.128 kb on + strand, within Xcc-8004.3870.1at 3737.128 kb on + strand, within Xcc-8004.3870.1at 3737.128 kb on + strand, within Xcc-8004.3870.1at 3737.129 kb on - strand, within Xcc-8004.3870.1at 3737.129 kb on - strand, within Xcc-8004.3870.1at 3737.129 kb on - strand, within Xcc-8004.3870.1at 3737.129 kb on - strand, within Xcc-8004.3870.1at 3737.129 kb on - strand, within Xcc-8004.3870.1at 3737.129 kb on - strand, within Xcc-8004.3870.1at 3737.137 kb on + strand, within Xcc-8004.3870.1at 3737.137 kb on + strand, within Xcc-8004.3870.1at 3737.138 kb on - strand, within Xcc-8004.3870.1at 3737.138 kb on - strand, within Xcc-8004.3870.1at 3737.138 kb on - strand, within Xcc-8004.3870.1at 3737.234 kb on - strand, within Xcc-8004.3870.1at 3737.234 kb on - strand, within Xcc-8004.3870.1at 3737.319 kb on + strand, within Xcc-8004.3870.1at 3737.320 kb on - strand, within Xcc-8004.3870.1at 3737.392 kb on - strand, within Xcc-8004.3870.1at 3737.411 kb on - strand, within Xcc-8004.3870.1at 3737.411 kb on - strand, within Xcc-8004.3870.1at 3737.431 kb on + strand, within Xcc-8004.3870.1at 3737.431 kb on + strand, within Xcc-8004.3870.1at 3737.431 kb on + strand, within Xcc-8004.3870.1at 3737.431 kb on + strand, within Xcc-8004.3870.1at 3737.431 kb on + strand, within Xcc-8004.3870.1at 3737.432 kb on - strand, within Xcc-8004.3870.1

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Per-strain Table

Position Strand Gene LocusTag Fraction PBS control
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3,735,214 + Xcc-8004.3868.1 0.62 -0.7
3,735,214 + Xcc-8004.3868.1 0.62 +1.1
3,735,215 - Xcc-8004.3868.1 0.62 -0.3
3,735,310 + Xcc-8004.3868.1 0.67 +1.1
3,735,311 - Xcc-8004.3868.1 0.67 +0.1
3,735,311 - Xcc-8004.3868.1 0.67 -0.4
3,735,443 + Xcc-8004.3868.1 0.74 +0.4
3,735,443 + Xcc-8004.3868.1 0.74 +0.6
3,735,444 - Xcc-8004.3868.1 0.74 +0.5
3,735,444 - Xcc-8004.3868.1 0.74 -0.9
3,735,444 - Xcc-8004.3868.1 0.74 +0.9
3,735,574 + Xcc-8004.3868.1 0.80 -0.2
3,735,574 + Xcc-8004.3868.1 0.80 +0.4
3,735,574 + Xcc-8004.3868.1 0.80 +0.4
3,735,575 - Xcc-8004.3868.1 0.81 -1.3
3,735,575 - Xcc-8004.3868.1 0.81 +1.8
3,735,575 - Xcc-8004.3868.1 0.81 -0.5
3,735,576 + Xcc-8004.3868.1 0.81 +0.2
3,735,576 + Xcc-8004.3868.1 0.81 +0.4
3,735,576 + Xcc-8004.3868.1 0.81 -0.3
3,735,576 + Xcc-8004.3868.1 0.81 +0.1
3,735,576 + Xcc-8004.3868.1 0.81 -0.3
3,735,576 + Xcc-8004.3868.1 0.81 +1.2
3,735,576 + Xcc-8004.3868.1 0.81 -0.2
3,735,576 + Xcc-8004.3868.1 0.81 +0.4
3,735,576 + Xcc-8004.3868.1 0.81 -0.6
3,735,576 + Xcc-8004.3868.1 0.81 +0.8
3,735,576 + Xcc-8004.3868.1 0.81 +1.2
3,735,576 + Xcc-8004.3868.1 0.81 +1.6
3,735,576 + Xcc-8004.3868.1 0.81 +1.5
3,735,576 + Xcc-8004.3868.1 0.81 -1.7
3,735,577 - Xcc-8004.3868.1 0.81 -0.5
3,735,577 - Xcc-8004.3868.1 0.81 -0.1
3,735,577 - Xcc-8004.3868.1 0.81 +1.8
3,735,577 - Xcc-8004.3868.1 0.81 +0.9
3,735,577 - Xcc-8004.3868.1 0.81 +0.1
3,735,577 - Xcc-8004.3868.1 0.81 -0.5
3,735,577 - Xcc-8004.3868.1 0.81 -1.3
3,735,962 + +0.7
3,736,209 - Xcc-8004.3869.1 0.21 -2.9
3,736,209 - Xcc-8004.3869.1 0.21 -0.8
3,736,209 - Xcc-8004.3869.1 0.21 -0.9
3,736,382 + Xcc-8004.3869.1 0.44 -1.5
3,736,383 - Xcc-8004.3869.1 0.44 -0.8
3,736,383 - Xcc-8004.3869.1 0.44 +1.1
3,736,473 - Xcc-8004.3869.1 0.55 -1.7
3,736,565 + Xcc-8004.3869.1 0.67 -2.3
3,736,583 + Xcc-8004.3869.1 0.70 -0.4
3,736,584 - Xcc-8004.3869.1 0.70 -1.7
3,736,584 - Xcc-8004.3869.1 0.70 +0.4
3,736,584 - Xcc-8004.3869.1 0.70 +0.4
3,736,665 + Xcc-8004.3869.1 0.80 -0.5
3,736,665 + Xcc-8004.3869.1 0.80 +0.6
3,736,749 - -2.5
3,737,116 + Xcc-8004.3870.1 0.18 +0.5
3,737,116 + Xcc-8004.3870.1 0.18 +1.1
3,737,116 + Xcc-8004.3870.1 0.18 +1.1
3,737,116 + Xcc-8004.3870.1 0.18 +0.3
3,737,116 + Xcc-8004.3870.1 0.18 -0.6
3,737,117 - Xcc-8004.3870.1 0.18 -1.0
3,737,117 - Xcc-8004.3870.1 0.18 +0.5
3,737,117 - Xcc-8004.3870.1 0.18 +1.8
3,737,117 - Xcc-8004.3870.1 0.18 -0.6
3,737,128 + Xcc-8004.3870.1 0.19 +0.5
3,737,128 + Xcc-8004.3870.1 0.19 -0.5
3,737,128 + Xcc-8004.3870.1 0.19 -1.6
3,737,128 + Xcc-8004.3870.1 0.19 +1.1
3,737,128 + Xcc-8004.3870.1 0.19 -1.4
3,737,129 - Xcc-8004.3870.1 0.19 -0.1
3,737,129 - Xcc-8004.3870.1 0.19 -0.1
3,737,129 - Xcc-8004.3870.1 0.19 +0.1
3,737,129 - Xcc-8004.3870.1 0.19 +0.9
3,737,129 - Xcc-8004.3870.1 0.19 +0.1
3,737,129 - Xcc-8004.3870.1 0.19 -1.5
3,737,137 + Xcc-8004.3870.1 0.20 -0.1
3,737,137 + Xcc-8004.3870.1 0.20 -0.9
3,737,138 - Xcc-8004.3870.1 0.20 +1.4
3,737,138 - Xcc-8004.3870.1 0.20 -0.2
3,737,138 - Xcc-8004.3870.1 0.20 +1.1
3,737,234 - Xcc-8004.3870.1 0.25 +0.7
3,737,234 - Xcc-8004.3870.1 0.25 +1.6
3,737,319 + Xcc-8004.3870.1 0.31 -2.0
3,737,320 - Xcc-8004.3870.1 0.31 +0.9
3,737,392 - Xcc-8004.3870.1 0.35 -0.9
3,737,411 - Xcc-8004.3870.1 0.36 -0.5
3,737,411 - Xcc-8004.3870.1 0.36 +0.1
3,737,431 + Xcc-8004.3870.1 0.37 +0.8
3,737,431 + Xcc-8004.3870.1 0.37 +1.6
3,737,431 + Xcc-8004.3870.1 0.37 -1.1
3,737,431 + Xcc-8004.3870.1 0.37 -0.7
3,737,431 + Xcc-8004.3870.1 0.37 -0.1
3,737,432 - Xcc-8004.3870.1 0.37 +0.4

Or see this region's nucleotide sequence