Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3207.1

Experiment: PBS control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3206.1 and Xcc-8004.3207.1 overlap by 13 nucleotidesXcc-8004.3207.1 and Xcc-8004.3208.1 overlap by 4 nucleotidesXcc-8004.3208.1 and Xcc-8004.3209.1 overlap by 4 nucleotides Xcc-8004.3206.1: Xcc-8004.3206.1 - Acyl-CoA dehydrogenase/oxidase domain protein, at 3,119,013 to 3,120,008 Xcc-8004.3206.1 Xcc-8004.3207.1: Xcc-8004.3207.1 - LmbE-like protein, at 3,119,996 to 3,120,757 Xcc-8004.3207.1 Xcc-8004.3208.1: Xcc-8004.3208.1 - Methyltransferase type 12, at 3,120,754 to 3,121,350 Xcc-8004.3208.1 Xcc-8004.3209.1: Xcc-8004.3209.1 - hypothetical protein, at 3,121,347 to 3,122,024 Xcc-8004.3209.1 Position (kb) 3119 3120 3121Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3119.001 kb on + strandat 3119.002 kb on - strandat 3119.102 kb on + strandat 3119.102 kb on + strandat 3119.103 kb on - strandat 3119.103 kb on - strandat 3119.135 kb on - strand, within Xcc-8004.3206.1at 3119.135 kb on - strand, within Xcc-8004.3206.1at 3119.390 kb on + strand, within Xcc-8004.3206.1at 3119.390 kb on + strand, within Xcc-8004.3206.1at 3119.390 kb on + strand, within Xcc-8004.3206.1at 3119.391 kb on - strand, within Xcc-8004.3206.1at 3119.391 kb on - strand, within Xcc-8004.3206.1at 3119.391 kb on - strand, within Xcc-8004.3206.1at 3119.391 kb on - strand, within Xcc-8004.3206.1at 3119.391 kb on - strand, within Xcc-8004.3206.1at 3119.391 kb on - strand, within Xcc-8004.3206.1at 3119.647 kb on + strand, within Xcc-8004.3206.1at 3119.647 kb on + strand, within Xcc-8004.3206.1at 3119.647 kb on + strand, within Xcc-8004.3206.1at 3119.648 kb on - strand, within Xcc-8004.3206.1at 3119.825 kb on + strand, within Xcc-8004.3206.1at 3120.006 kb on + strandat 3120.243 kb on - strand, within Xcc-8004.3207.1at 3121.100 kb on - strand, within Xcc-8004.3208.1at 3121.102 kb on + strand, within Xcc-8004.3208.1

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Per-strain Table

Position Strand Gene LocusTag Fraction PBS control
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3,119,001 + -0.4
3,119,002 - +0.9
3,119,102 + -0.3
3,119,102 + -0.0
3,119,103 - -1.0
3,119,103 - -1.3
3,119,135 - Xcc-8004.3206.1 0.12 +0.4
3,119,135 - Xcc-8004.3206.1 0.12 +0.8
3,119,390 + Xcc-8004.3206.1 0.38 -0.3
3,119,390 + Xcc-8004.3206.1 0.38 +0.1
3,119,390 + Xcc-8004.3206.1 0.38 -0.7
3,119,391 - Xcc-8004.3206.1 0.38 +0.1
3,119,391 - Xcc-8004.3206.1 0.38 +0.3
3,119,391 - Xcc-8004.3206.1 0.38 +1.1
3,119,391 - Xcc-8004.3206.1 0.38 -2.3
3,119,391 - Xcc-8004.3206.1 0.38 -0.5
3,119,391 - Xcc-8004.3206.1 0.38 -0.3
3,119,647 + Xcc-8004.3206.1 0.64 +0.5
3,119,647 + Xcc-8004.3206.1 0.64 +3.9
3,119,647 + Xcc-8004.3206.1 0.64 -1.3
3,119,648 - Xcc-8004.3206.1 0.64 -1.7
3,119,825 + Xcc-8004.3206.1 0.82 -0.2
3,120,006 + +1.2
3,120,243 - Xcc-8004.3207.1 0.32 +0.2
3,121,100 - Xcc-8004.3208.1 0.58 -1.2
3,121,102 + Xcc-8004.3208.1 0.58 -2.3

Or see this region's nucleotide sequence