Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2434.1

Experiment: PBS control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PBS control
2,373,811	+				-0.1
2,373,812	-				-0.5
2,373,931	+				+0.7
2,373,931	+				+0.4
2,373,931	+				-0.3
2,373,931	+				-1.8
2,373,931	+				+0.4
2,373,939	+				-0.3
2,373,939	+				+0.5
2,373,956	+				-0.7
2,373,976	+				+0.4
2,373,976	+				+0.8
2,373,976	+				-0.4
2,373,976	+				-0.8
2,373,977	-				+0.7
2,373,977	-				-0.5
2,373,977	-				-0.1
2,373,977	-				-0.3
2,373,992	+				+0.1
2,373,992	+				-1.4
2,373,992	+				-0.4
2,373,992	+				-1.0
2,373,992	+				-0.4
2,373,992	+				+0.4
2,373,992	+				+0.7
2,373,993	-				+0.6
2,373,993	-				+0.3
2,373,993	-				-0.1
2,373,993	-				+1.2
2,373,993	-				+0.5
2,373,993	-				-1.1
2,374,073	+				+0.4
2,374,073	+				-0.1
2,374,106	-				-0.9
2,374,183	+				+0.4
2,374,287	-				+1.6
2,374,358	+				-0.0
2,374,358	+				+0.1
2,374,358	+				-0.5
2,374,358	+				-0.4
2,374,359	-				-0.4
2,374,359	-				-0.5
2,374,359	-				-0.6
2,374,376	+				+1.1
2,374,376	+				+0.5
2,374,376	+				-1.5
2,374,377	-				+1.1
2,374,430	-				-0.3
2,374,430	-				-0.1
2,374,536	+				-1.2
2,374,536	+				-0.3
2,374,536	+				-0.9
2,374,536	+				+0.3
2,374,537	-				-0.5
2,374,537	-				+1.4
2,374,537	-				-0.8
2,374,594	+				-1.0
2,374,594	+				+0.1
2,374,595	-				-0.9
2,374,889	+		Xcc-8004.2434.1	0.38	-0.4
2,374,889	+		Xcc-8004.2434.1	0.38	-1.5
2,374,914	+		Xcc-8004.2434.1	0.47	+0.7
2,374,931	+		Xcc-8004.2434.1	0.54	-0.7
2,374,932	-		Xcc-8004.2434.1	0.54	-1.8
2,374,932	-		Xcc-8004.2434.1	0.54	-1.5
2,374,932	-		Xcc-8004.2434.1	0.54	-0.3
2,374,945	+		Xcc-8004.2434.1	0.59	-1.3
2,374,945	+		Xcc-8004.2434.1	0.59	+0.1
2,374,945	+		Xcc-8004.2434.1	0.59	-0.5
2,374,945	+		Xcc-8004.2434.1	0.59	+0.3
2,374,946	-		Xcc-8004.2434.1	0.59	-1.3
2,374,946	-		Xcc-8004.2434.1	0.59	-1.5
2,374,946	-		Xcc-8004.2434.1	0.59	+0.1
2,375,067	-				+0.4
2,375,169	+		Xcc-8004.2437.1	0.11	-0.2
2,375,169	+		Xcc-8004.2437.1	0.11	+0.9
2,375,169	+		Xcc-8004.2437.1	0.11	-1.1
2,375,169	+		Xcc-8004.2437.1	0.11	+0.8
2,375,169	+		Xcc-8004.2437.1	0.11	+3.1
2,375,170	-		Xcc-8004.2437.1	0.11	-1.6
2,375,170	-		Xcc-8004.2437.1	0.11	-0.4
2,375,170	-		Xcc-8004.2437.1	0.11	+0.1
2,375,253	+		Xcc-8004.2437.1	0.29	+1.5
2,375,253	+		Xcc-8004.2437.1	0.29	-0.3
2,375,253	+		Xcc-8004.2437.1	0.29	-0.1
2,375,254	-		Xcc-8004.2437.1	0.29	+0.3
2,375,254	-		Xcc-8004.2437.1	0.29	+0.1
2,375,254	-		Xcc-8004.2437.1	0.29	+0.1
2,375,277	+		Xcc-8004.2437.1	0.34	-1.3
2,375,278	-		Xcc-8004.2437.1	0.34	-1.7
2,375,278	-		Xcc-8004.2437.1	0.34	+1.1
2,375,278	-		Xcc-8004.2437.1	0.34	-2.1
2,375,278	-		Xcc-8004.2437.1	0.34	+1.7
2,375,278	-		Xcc-8004.2437.1	0.34	-0.3
2,375,278	-		Xcc-8004.2437.1	0.34	-1.3
2,375,286	+		Xcc-8004.2437.1	0.36	+0.7
2,375,287	-		Xcc-8004.2437.1	0.36	+0.1
2,375,307	+		Xcc-8004.2437.1	0.40	-0.4
2,375,307	+		Xcc-8004.2437.1	0.40	-0.6
2,375,308	-		Xcc-8004.2437.1	0.41	-1.3
2,375,308	-		Xcc-8004.2437.1	0.41	+0.4
2,375,308	-		Xcc-8004.2437.1	0.41	+0.6
2,375,383	+		Xcc-8004.2437.1	0.57	-0.1
2,375,383	+		Xcc-8004.2437.1	0.57	-1.6
2,375,384	-		Xcc-8004.2437.1	0.57	-0.7
2,375,384	-		Xcc-8004.2437.1	0.57	-0.3
2,375,384	-		Xcc-8004.2437.1	0.57	+0.3
2,375,384	-		Xcc-8004.2437.1	0.57	-0.4
2,375,553	-				-0.4
2,375,553	-				-0.7
2,375,553	-				+0.1
2,375,565	+				+1.5
2,375,565	+				-0.9
2,375,565	+				-1.5
2,375,565	+				-0.8
2,375,565	+				+1.4
2,375,565	+				+0.8
2,375,566	-				-1.7
2,375,566	-				-0.0
2,375,566	-				-1.5
2,375,566	-				+0.2
2,375,566	-				+0.2
2,375,566	-				-1.9
2,375,566	-				+0.4
2,375,566	-				-0.8
2,375,591	+				-0.4
2,375,591	+				-0.5
2,375,591	+				-1.7
2,375,591	+				-2.4
2,375,592	-				-0.0
2,375,592	-				+0.5
2,375,609	+				-0.3
2,375,609	+				-1.4
2,375,609	+				+0.5
2,375,609	+				-0.2
2,375,609	+				-0.5
2,375,609	+				-0.7
2,375,609	+				+0.1
2,375,609	+				+1.5
2,375,609	+				-0.4
2,375,609	+				-0.3
2,375,609	+				+1.1
2,375,609	+				+0.3
2,375,609	+				-0.4
2,375,609	+				-0.4
2,375,610	-				+1.6
2,375,610	-				-2.1
2,375,610	-				-0.9
2,375,610	-				-0.0
2,375,610	-				-1.4
2,375,610	-				-0.5
2,375,610	-				+0.2
2,375,610	-				+0.6
2,375,610	-				+1.1
2,375,610	-				+0.1
2,375,610	-				-0.5
2,375,610	-				-0.3
2,375,610	-				+0.3
2,375,610	-				-0.4
2,375,610	-				-0.7
2,375,610	-				-0.9
2,375,610	-				-0.4
2,375,693	+		Xcc-8004.2438.1	0.27	-0.1
2,375,717	+		Xcc-8004.2438.1	0.33	-1.3
2,375,717	+		Xcc-8004.2438.1	0.33	+1.1
2,375,717	+		Xcc-8004.2438.1	0.33	+0.3
2,375,717	+		Xcc-8004.2438.1	0.33	-1.1
2,375,717	+		Xcc-8004.2438.1	0.33	+1.9
2,375,718	-		Xcc-8004.2438.1	0.33	+1.1
2,375,718	-		Xcc-8004.2438.1	0.33	-0.5
2,375,718	-		Xcc-8004.2438.1	0.33	-1.3
2,375,718	-		Xcc-8004.2438.1	0.33	+0.2
2,375,753	+		Xcc-8004.2438.1	0.42	+0.1
2,375,753	+		Xcc-8004.2438.1	0.42	-0.5
2,375,754	-		Xcc-8004.2438.1	0.42	-0.4
2,375,754	-		Xcc-8004.2438.1	0.42	+1.1
2,375,775	-		Xcc-8004.2438.1	0.48	-0.9
2,375,807	+		Xcc-8004.2438.1	0.56	-0.5
2,375,807	+		Xcc-8004.2438.1	0.56	-1.0
2,375,807	+		Xcc-8004.2438.1	0.56	+0.6
2,375,807	+		Xcc-8004.2438.1	0.56	+0.6
2,375,807	+		Xcc-8004.2438.1	0.56	-0.4
2,375,807	+		Xcc-8004.2438.1	0.56	+1.0
2,375,807	+		Xcc-8004.2438.1	0.56	+0.1
2,375,807	+		Xcc-8004.2438.1	0.56	-0.6
2,375,807	+		Xcc-8004.2438.1	0.56	+1.5
2,375,807	+		Xcc-8004.2438.1	0.56	-0.7
2,375,807	+		Xcc-8004.2438.1	0.56	-1.1
2,375,807	+		Xcc-8004.2438.1	0.56	+0.4
2,375,807	+		Xcc-8004.2438.1	0.56	-1.5
2,375,807	+		Xcc-8004.2438.1	0.56	+1.1
2,375,807	+		Xcc-8004.2438.1	0.56	-0.5
2,375,807	+		Xcc-8004.2438.1	0.56	+1.4
2,375,807	+		Xcc-8004.2438.1	0.56	-0.1
2,375,808	-		Xcc-8004.2438.1	0.56	+1.6
2,375,808	-		Xcc-8004.2438.1	0.56	-0.4
2,375,808	-		Xcc-8004.2438.1	0.56	-0.5
2,375,808	-		Xcc-8004.2438.1	0.56	+1.6
2,375,808	-		Xcc-8004.2438.1	0.56	-0.3
2,375,808	-		Xcc-8004.2438.1	0.56	+0.7
2,375,808	-		Xcc-8004.2438.1	0.56	-0.9
2,375,808	-		Xcc-8004.2438.1	0.56	-0.1
2,375,808	-		Xcc-8004.2438.1	0.56	-1.3
2,375,808	-		Xcc-8004.2438.1	0.56	-0.4
2,375,808	-		Xcc-8004.2438.1	0.56	+0.6
2,375,808	-		Xcc-8004.2438.1	0.56	+1.6
2,375,808	-		Xcc-8004.2438.1	0.56	-1.3
2,375,808	-		Xcc-8004.2438.1	0.56	+0.5
2,375,808	-		Xcc-8004.2438.1	0.56	+0.1
2,375,808	-		Xcc-8004.2438.1	0.56	-0.8
2,375,808	-		Xcc-8004.2438.1	0.56	+0.8
2,375,808	-		Xcc-8004.2438.1	0.56	-0.4
2,375,808	-		Xcc-8004.2438.1	0.56	+0.1
2,375,808	-		Xcc-8004.2438.1	0.56	-0.2
2,375,808	-		Xcc-8004.2438.1	0.56	+1.3
2,375,808	-		Xcc-8004.2438.1	0.56	+0.4
2,376,000	+				+1.1
2,376,000	+				+1.2
2,376,000	+				-1.0
2,376,000	+				-0.9
2,376,000	+				-0.4
2,376,000	+				+0.9
2,376,039	+				+1.1
2,376,039	+				-0.2
2,376,039	+				-0.5
2,376,039	+				+0.8
2,376,039	+				-1.3
2,376,040	-				+0.7
2,376,040	-				+0.3
2,376,040	-				-0.6
2,376,040	-				-0.6
2,376,040	-				-0.1