Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1394.1

Experiment: PBS control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1392.1 and Xcc-8004.1393.1 overlap by 4 nucleotidesXcc-8004.1393.1 and Xcc-8004.1394.1 are separated by 2 nucleotidesXcc-8004.1394.1 and Xcc-8004.1395.1 are separated by 22 nucleotides Xcc-8004.1392.1: Xcc-8004.1392.1 - Optional hypothetical component of the B12 transporter BtuM, at 1,319,826 to 1,320,440 Xcc-8004.1392.1 Xcc-8004.1393.1: Xcc-8004.1393.1 - Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 1,320,437 to 1,321,048 Xcc-8004.1393.1 Xcc-8004.1394.1: Xcc-8004.1394.1 - Cobyrinic acid A,C-diamide synthase, at 1,321,051 to 1,322,349 Xcc-8004.1394.1 Xcc-8004.1395.1: Xcc-8004.1395.1 - Adenosylcobinamide-phosphate synthase (EC 6.3.1.10), at 1,322,372 to 1,323,283 Xcc-8004.1395.1 Position (kb) 1321 1322 1323Strain fitness (log2 ratio) -2 -1 0 1 2at 1320.162 kb on + strand, within Xcc-8004.1392.1at 1320.162 kb on + strand, within Xcc-8004.1392.1at 1320.162 kb on + strand, within Xcc-8004.1392.1at 1320.163 kb on - strand, within Xcc-8004.1392.1at 1320.243 kb on + strand, within Xcc-8004.1392.1at 1320.244 kb on - strand, within Xcc-8004.1392.1at 1320.267 kb on + strand, within Xcc-8004.1392.1at 1320.267 kb on + strand, within Xcc-8004.1392.1at 1320.267 kb on + strand, within Xcc-8004.1392.1at 1320.268 kb on - strand, within Xcc-8004.1392.1at 1320.268 kb on - strand, within Xcc-8004.1392.1at 1320.331 kb on - strand, within Xcc-8004.1392.1at 1320.331 kb on - strand, within Xcc-8004.1392.1at 1320.331 kb on - strand, within Xcc-8004.1392.1at 1320.363 kb on + strand, within Xcc-8004.1392.1at 1320.363 kb on + strand, within Xcc-8004.1392.1at 1320.363 kb on + strand, within Xcc-8004.1392.1at 1320.364 kb on - strand, within Xcc-8004.1392.1at 1320.385 kb on + strandat 1320.385 kb on + strandat 1320.442 kb on + strandat 1320.442 kb on + strandat 1320.442 kb on + strandat 1320.442 kb on + strandat 1320.443 kb on - strandat 1320.443 kb on - strandat 1320.707 kb on + strand, within Xcc-8004.1393.1at 1320.708 kb on - strand, within Xcc-8004.1393.1at 1320.730 kb on + strand, within Xcc-8004.1393.1at 1320.731 kb on - strand, within Xcc-8004.1393.1at 1320.867 kb on - strand, within Xcc-8004.1393.1at 1320.867 kb on - strand, within Xcc-8004.1393.1at 1321.044 kb on + strandat 1321.045 kb on - strandat 1321.079 kb on + strandat 1321.146 kb on + strandat 1321.147 kb on - strandat 1321.811 kb on - strand, within Xcc-8004.1394.1at 1322.175 kb on + strand, within Xcc-8004.1394.1at 1322.175 kb on + strand, within Xcc-8004.1394.1at 1322.176 kb on - strand, within Xcc-8004.1394.1at 1322.176 kb on - strand, within Xcc-8004.1394.1at 1322.176 kb on - strand, within Xcc-8004.1394.1at 1322.186 kb on - strand, within Xcc-8004.1394.1at 1322.263 kb on + strandat 1322.264 kb on - strandat 1322.302 kb on + strandat 1322.627 kb on + strand, within Xcc-8004.1395.1at 1322.628 kb on - strand, within Xcc-8004.1395.1at 1322.628 kb on - strand, within Xcc-8004.1395.1at 1322.647 kb on + strand, within Xcc-8004.1395.1at 1322.999 kb on + strand, within Xcc-8004.1395.1at 1322.999 kb on + strand, within Xcc-8004.1395.1at 1322.999 kb on + strand, within Xcc-8004.1395.1at 1322.999 kb on + strand, within Xcc-8004.1395.1at 1323.000 kb on - strand, within Xcc-8004.1395.1at 1323.000 kb on - strand, within Xcc-8004.1395.1at 1323.289 kb on + strandat 1323.290 kb on - strandat 1323.331 kb on + strandat 1323.332 kb on - strandat 1323.332 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PBS control
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1,320,162 + Xcc-8004.1392.1 0.55 -1.6
1,320,162 + Xcc-8004.1392.1 0.55 +1.0
1,320,162 + Xcc-8004.1392.1 0.55 -0.3
1,320,163 - Xcc-8004.1392.1 0.55 -0.4
1,320,243 + Xcc-8004.1392.1 0.68 -0.6
1,320,244 - Xcc-8004.1392.1 0.68 -0.3
1,320,267 + Xcc-8004.1392.1 0.72 +0.4
1,320,267 + Xcc-8004.1392.1 0.72 -1.0
1,320,267 + Xcc-8004.1392.1 0.72 -0.5
1,320,268 - Xcc-8004.1392.1 0.72 -1.4
1,320,268 - Xcc-8004.1392.1 0.72 -1.4
1,320,331 - Xcc-8004.1392.1 0.82 -0.3
1,320,331 - Xcc-8004.1392.1 0.82 +0.2
1,320,331 - Xcc-8004.1392.1 0.82 +0.8
1,320,363 + Xcc-8004.1392.1 0.87 +0.2
1,320,363 + Xcc-8004.1392.1 0.87 -0.8
1,320,363 + Xcc-8004.1392.1 0.87 -0.3
1,320,364 - Xcc-8004.1392.1 0.87 +1.4
1,320,385 + -0.4
1,320,385 + -1.8
1,320,442 + +1.4
1,320,442 + -0.1
1,320,442 + +1.0
1,320,442 + +1.1
1,320,443 - -0.1
1,320,443 - +1.0
1,320,707 + Xcc-8004.1393.1 0.44 -1.0
1,320,708 - Xcc-8004.1393.1 0.44 +0.1
1,320,730 + Xcc-8004.1393.1 0.48 -0.7
1,320,731 - Xcc-8004.1393.1 0.48 +0.4
1,320,867 - Xcc-8004.1393.1 0.70 -0.2
1,320,867 - Xcc-8004.1393.1 0.70 -0.7
1,321,044 + +0.5
1,321,045 - +1.2
1,321,079 + -1.3
1,321,146 + -0.3
1,321,147 - -1.4
1,321,811 - Xcc-8004.1394.1 0.59 -0.6
1,322,175 + Xcc-8004.1394.1 0.87 -2.3
1,322,175 + Xcc-8004.1394.1 0.87 +0.5
1,322,176 - Xcc-8004.1394.1 0.87 -0.7
1,322,176 - Xcc-8004.1394.1 0.87 +0.7
1,322,176 - Xcc-8004.1394.1 0.87 -1.0
1,322,186 - Xcc-8004.1394.1 0.87 -1.0
1,322,263 + +0.7
1,322,264 - +1.2
1,322,302 + +0.3
1,322,627 + Xcc-8004.1395.1 0.28 +2.3
1,322,628 - Xcc-8004.1395.1 0.28 +0.2
1,322,628 - Xcc-8004.1395.1 0.28 +0.6
1,322,647 + Xcc-8004.1395.1 0.30 +0.8
1,322,999 + Xcc-8004.1395.1 0.69 +1.0
1,322,999 + Xcc-8004.1395.1 0.69 -2.6
1,322,999 + Xcc-8004.1395.1 0.69 +1.0
1,322,999 + Xcc-8004.1395.1 0.69 -0.6
1,323,000 - Xcc-8004.1395.1 0.69 +0.5
1,323,000 - Xcc-8004.1395.1 0.69 +0.1
1,323,289 + +0.3
1,323,290 - +0.5
1,323,331 + -0.1
1,323,332 - -0.8
1,323,332 - +0.3

Or see this region's nucleotide sequence