Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0689 and clpS overlap by 17 nucleotides clpS and Synpcc7942_0691 are separated by 134 nucleotides Synpcc7942_0691 and Synpcc7942_0692 overlap by 4 nucleotides Synpcc7942_0692 and Synpcc7942_0693 are separated by 61 nucleotides Synpcc7942_0693 and rps1 are separated by 52 nucleotides
Synpcc7942_0689: Synpcc7942_0689 - hypothetical protein, at 684,051 to 684,884
_0689
Synpcc7942_0690: clpS - ATP-dependent Clp protease adaptor protein ClpS, at 684,868 to 685,155
clpS
Synpcc7942_0691: Synpcc7942_0691 - hypothetical protein, at 685,290 to 685,634
_0691
Synpcc7942_0692: Synpcc7942_0692 - hypothetical protein, at 685,631 to 686,185
_0692
Synpcc7942_0693: Synpcc7942_0693 - hypothetical protein, at 686,247 to 687,080
_0693
Synpcc7942_0694: rps1 - 30S ribosomal protein S1, at 687,133 to 688,056
rps1
Position (kb) 685
686
687 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 684.844 kb on + strand at 684.844 kb on + strand at 684.852 kb on - strand at 684.852 kb on - strand at 684.852 kb on - strand at 684.855 kb on - strand at 684.879 kb on + strand at 684.887 kb on - strand at 684.887 kb on - strand at 684.887 kb on - strand at 684.887 kb on - strand at 684.887 kb on - strand at 684.895 kb on - strand at 684.905 kb on - strand, within clpS at 684.954 kb on + strand, within clpS at 684.994 kb on + strand, within clpS at 685.001 kb on + strand, within clpS at 685.020 kb on - strand, within clpS at 685.028 kb on + strand, within clpS at 685.036 kb on - strand, within clpS at 685.041 kb on - strand, within clpS at 685.049 kb on + strand, within clpS at 685.324 kb on + strand at 685.332 kb on - strand, within Synpcc7942_0691 at 685.332 kb on - strand, within Synpcc7942_0691 at 685.343 kb on + strand, within Synpcc7942_0691 at 685.351 kb on - strand, within Synpcc7942_0691 at 685.420 kb on + strand, within Synpcc7942_0691 at 685.420 kb on + strand, within Synpcc7942_0691 at 685.428 kb on - strand, within Synpcc7942_0691 at 685.428 kb on - strand, within Synpcc7942_0691 at 685.446 kb on - strand, within Synpcc7942_0691 at 685.458 kb on + strand, within Synpcc7942_0691 at 685.494 kb on + strand, within Synpcc7942_0691 at 685.494 kb on + strand, within Synpcc7942_0691 at 685.494 kb on + strand, within Synpcc7942_0691 at 685.495 kb on + strand, within Synpcc7942_0691 at 685.502 kb on + strand, within Synpcc7942_0691 at 685.504 kb on + strand, within Synpcc7942_0691 at 685.512 kb on - strand, within Synpcc7942_0691 at 685.514 kb on + strand, within Synpcc7942_0691 at 685.523 kb on - strand, within Synpcc7942_0691 at 685.562 kb on + strand, within Synpcc7942_0691 at 685.563 kb on + strand, within Synpcc7942_0691 at 685.571 kb on - strand, within Synpcc7942_0691 at 685.571 kb on - strand, within Synpcc7942_0691 at 685.573 kb on + strand, within Synpcc7942_0691 at 685.578 kb on + strand, within Synpcc7942_0691 at 685.592 kb on - strand, within Synpcc7942_0691 at 685.637 kb on - strand at 685.640 kb on + strand at 685.654 kb on + strand at 685.660 kb on + strand at 685.664 kb on + strand at 685.667 kb on - strand at 685.672 kb on - strand at 685.682 kb on + strand at 685.689 kb on - strand, within Synpcc7942_0692 at 685.689 kb on - strand, within Synpcc7942_0692 at 685.690 kb on - strand, within Synpcc7942_0692 at 685.690 kb on - strand, within Synpcc7942_0692 at 685.705 kb on + strand at 685.708 kb on - strand, within Synpcc7942_0692 at 685.716 kb on + strand, within Synpcc7942_0692 at 685.725 kb on + strand, within Synpcc7942_0692 at 685.725 kb on + strand, within Synpcc7942_0692 at 685.804 kb on + strand, within Synpcc7942_0692 at 685.872 kb on + strand, within Synpcc7942_0692 at 685.880 kb on - strand, within Synpcc7942_0692 at 685.886 kb on - strand, within Synpcc7942_0692 at 685.918 kb on + strand, within Synpcc7942_0692 at 685.957 kb on + strand, within Synpcc7942_0692 at 685.965 kb on - strand, within Synpcc7942_0692 at 686.041 kb on - strand, within Synpcc7942_0692 at 686.047 kb on - strand, within Synpcc7942_0692 at 686.048 kb on + strand, within Synpcc7942_0692 at 686.060 kb on - strand, within Synpcc7942_0692 at 686.112 kb on + strand, within Synpcc7942_0692 at 686.120 kb on + strand, within Synpcc7942_0692 at 686.120 kb on + strand, within Synpcc7942_0692 at 686.122 kb on - strand, within Synpcc7942_0692 at 686.128 kb on - strand, within Synpcc7942_0692 at 686.128 kb on - strand, within Synpcc7942_0692 at 686.138 kb on - strand at 686.138 kb on - strand at 686.139 kb on - strand at 686.140 kb on - strand at 686.164 kb on - strand at 686.168 kb on + strand at 686.189 kb on + strand at 686.189 kb on + strand at 686.189 kb on + strand at 686.196 kb on - strand at 686.197 kb on - strand at 686.203 kb on - strand at 686.214 kb on + strand at 686.224 kb on - strand at 686.254 kb on + strand at 686.345 kb on + strand, within Synpcc7942_0693 at 686.355 kb on + strand, within Synpcc7942_0693 at 686.449 kb on + strand, within Synpcc7942_0693 at 686.457 kb on - strand, within Synpcc7942_0693 at 686.469 kb on + strand, within Synpcc7942_0693 at 686.491 kb on + strand, within Synpcc7942_0693 at 686.576 kb on - strand, within Synpcc7942_0693 at 686.576 kb on - strand at 686.585 kb on + strand, within Synpcc7942_0693 at 686.669 kb on - strand, within Synpcc7942_0693 at 686.679 kb on - strand, within Synpcc7942_0693 at 686.728 kb on - strand, within Synpcc7942_0693 at 686.728 kb on - strand, within Synpcc7942_0693 at 686.739 kb on + strand, within Synpcc7942_0693 at 686.748 kb on - strand, within Synpcc7942_0693 at 686.753 kb on - strand, within Synpcc7942_0693 at 686.840 kb on + strand, within Synpcc7942_0693 at 686.852 kb on + strand, within Synpcc7942_0693 at 686.893 kb on + strand, within Synpcc7942_0693 at 686.904 kb on + strand, within Synpcc7942_0693 at 686.904 kb on + strand, within Synpcc7942_0693 at 686.912 kb on - strand, within Synpcc7942_0693 at 686.919 kb on + strand, within Synpcc7942_0693 at 686.935 kb on + strand, within Synpcc7942_0693 at 686.946 kb on + strand, within Synpcc7942_0693 at 686.947 kb on + strand, within Synpcc7942_0693 at 686.954 kb on - strand, within Synpcc7942_0693 at 686.955 kb on - strand, within Synpcc7942_0693 at 686.970 kb on + strand, within Synpcc7942_0693 at 686.970 kb on + strand, within Synpcc7942_0693 at 686.983 kb on - strand, within Synpcc7942_0693 at 686.998 kb on + strand at 686.998 kb on + strand at 687.033 kb on + strand at 687.038 kb on + strand at 687.046 kb on + strand at 687.054 kb on - strand at 687.063 kb on + strand at 687.148 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 684,844 + -0.0 684,844 + -1.1 684,852 - +1.1 684,852 - +0.2 684,852 - -1.1 684,855 - +0.5 684,879 + +0.6 684,887 - +0.9 684,887 - +0.2 684,887 - +1.7 684,887 - -0.4 684,887 - +1.3 684,895 - +0.9 684,905 - clpS Synpcc7942_0690 0.13 -2.1 684,954 + clpS Synpcc7942_0690 0.30 +1.3 684,994 + clpS Synpcc7942_0690 0.44 -1.1 685,001 + clpS Synpcc7942_0690 0.46 +1.2 685,020 - clpS Synpcc7942_0690 0.53 +1.0 685,028 + clpS Synpcc7942_0690 0.56 +1.0 685,036 - clpS Synpcc7942_0690 0.58 +0.7 685,041 - clpS Synpcc7942_0690 0.60 +1.2 685,049 + clpS Synpcc7942_0690 0.63 -2.7 685,324 + +0.3 685,332 - Synpcc7942_0691 0.12 -3.3 685,332 - Synpcc7942_0691 0.12 +2.2 685,343 + Synpcc7942_0691 0.15 +0.9 685,351 - Synpcc7942_0691 0.18 +0.7 685,420 + Synpcc7942_0691 0.38 -0.1 685,420 + Synpcc7942_0691 0.38 +0.4 685,428 - Synpcc7942_0691 0.40 +1.1 685,428 - Synpcc7942_0691 0.40 +1.4 685,446 - Synpcc7942_0691 0.45 +0.9 685,458 + Synpcc7942_0691 0.49 -1.7 685,494 + Synpcc7942_0691 0.59 -0.1 685,494 + Synpcc7942_0691 0.59 +2.4 685,494 + Synpcc7942_0691 0.59 +0.7 685,495 + Synpcc7942_0691 0.59 -0.4 685,502 + Synpcc7942_0691 0.61 -0.7 685,504 + Synpcc7942_0691 0.62 +0.2 685,512 - Synpcc7942_0691 0.64 -0.4 685,514 + Synpcc7942_0691 0.65 +0.4 685,523 - Synpcc7942_0691 0.68 -0.8 685,562 + Synpcc7942_0691 0.79 +0.2 685,563 + Synpcc7942_0691 0.79 +0.3 685,571 - Synpcc7942_0691 0.81 -2.0 685,571 - Synpcc7942_0691 0.81 -0.9 685,573 + Synpcc7942_0691 0.82 -0.6 685,578 + Synpcc7942_0691 0.83 +0.9 685,592 - Synpcc7942_0691 0.88 +0.8 685,637 - -0.1 685,640 + +2.9 685,654 + -2.1 685,660 + -0.5 685,664 + +0.9 685,667 - +0.6 685,672 - -0.3 685,682 + +0.7 685,689 - Synpcc7942_0692 0.10 +1.3 685,689 - Synpcc7942_0692 0.10 +0.7 685,690 - Synpcc7942_0692 0.11 +0.6 685,690 - Synpcc7942_0692 0.11 +0.4 685,705 + -1.1 685,708 - Synpcc7942_0692 0.14 +0.4 685,716 + Synpcc7942_0692 0.15 -0.7 685,725 + Synpcc7942_0692 0.17 -0.6 685,725 + Synpcc7942_0692 0.17 -0.6 685,804 + Synpcc7942_0692 0.31 -0.5 685,872 + Synpcc7942_0692 0.43 -0.4 685,880 - Synpcc7942_0692 0.45 +1.7 685,886 - Synpcc7942_0692 0.46 -1.0 685,918 + Synpcc7942_0692 0.52 -2.2 685,957 + Synpcc7942_0692 0.59 -1.1 685,965 - Synpcc7942_0692 0.60 +0.2 686,041 - Synpcc7942_0692 0.74 -0.7 686,047 - Synpcc7942_0692 0.75 -0.4 686,048 + Synpcc7942_0692 0.75 -1.8 686,060 - Synpcc7942_0692 0.77 +1.1 686,112 + Synpcc7942_0692 0.87 -0.3 686,120 + Synpcc7942_0692 0.88 -0.8 686,120 + Synpcc7942_0692 0.88 -0.6 686,122 - Synpcc7942_0692 0.88 -0.9 686,128 - Synpcc7942_0692 0.90 +1.4 686,128 - Synpcc7942_0692 0.90 -1.5 686,138 - +0.9 686,138 - -0.0 686,139 - -1.1 686,140 - +0.2 686,164 - -0.1 686,168 + +0.4 686,189 + +1.7 686,189 + +2.3 686,189 + +0.6 686,196 - +1.3 686,197 - +0.3 686,203 - +0.1 686,214 + +0.6 686,224 - -1.0 686,254 + +0.7 686,345 + Synpcc7942_0693 0.12 +0.4 686,355 + Synpcc7942_0693 0.13 -2.1 686,449 + Synpcc7942_0693 0.24 -1.5 686,457 - Synpcc7942_0693 0.25 -0.1 686,469 + Synpcc7942_0693 0.27 -0.6 686,491 + Synpcc7942_0693 0.29 -0.5 686,576 - Synpcc7942_0693 0.39 -1.1 686,576 - -1.1 686,585 + Synpcc7942_0693 0.41 -2.1 686,669 - Synpcc7942_0693 0.51 -0.3 686,679 - Synpcc7942_0693 0.52 -2.9 686,728 - Synpcc7942_0693 0.58 +0.2 686,728 - Synpcc7942_0693 0.58 -2.1 686,739 + Synpcc7942_0693 0.59 -1.7 686,748 - Synpcc7942_0693 0.60 +0.6 686,753 - Synpcc7942_0693 0.61 -0.8 686,840 + Synpcc7942_0693 0.71 -0.7 686,852 + Synpcc7942_0693 0.73 -2.5 686,893 + Synpcc7942_0693 0.77 -2.1 686,904 + Synpcc7942_0693 0.79 +1.1 686,904 + Synpcc7942_0693 0.79 -2.1 686,912 - Synpcc7942_0693 0.80 -0.1 686,919 + Synpcc7942_0693 0.81 +0.5 686,935 + Synpcc7942_0693 0.82 +0.3 686,946 + Synpcc7942_0693 0.84 +1.2 686,947 + Synpcc7942_0693 0.84 +0.4 686,954 - Synpcc7942_0693 0.85 -2.4 686,955 - Synpcc7942_0693 0.85 +1.4 686,970 + Synpcc7942_0693 0.87 -1.0 686,970 + Synpcc7942_0693 0.87 -0.7 686,983 - Synpcc7942_0693 0.88 -2.5 686,998 + -0.1 686,998 + +0.4 687,033 + -0.4 687,038 + +1.2 687,046 + -2.5 687,054 - +2.0 687,063 + -0.9 687,148 - -1.1
Or see this region's nucleotide sequence