Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0687

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0686 and Synpcc7942_0687 overlap by 11 nucleotidesSynpcc7942_0687 and Synpcc7942_0688 overlap by 26 nucleotidesSynpcc7942_0688 and Synpcc7942_0689 overlap by 10 nucleotides Synpcc7942_0686: Synpcc7942_0686 - FO synthase subunit 2, at 680,978 to 682,138 _0686 Synpcc7942_0687: Synpcc7942_0687 - hypothetical protein, at 682,128 to 683,747 _0687 Synpcc7942_0688: Synpcc7942_0688 - transcriptional regulator, ArsR family, at 683,722 to 684,060 _0688 Synpcc7942_0689: Synpcc7942_0689 - hypothetical protein, at 684,051 to 684,884 _0689 Position (kb) 682 683 684Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 681.138 kb on - strand, within Synpcc7942_0686at 681.232 kb on + strand, within Synpcc7942_0686at 681.235 kb on - strand, within Synpcc7942_0686at 681.325 kb on + strand, within Synpcc7942_0686at 681.387 kb on + strand, within Synpcc7942_0686at 681.387 kb on + strand, within Synpcc7942_0686at 681.387 kb on + strand, within Synpcc7942_0686at 681.395 kb on - strand, within Synpcc7942_0686at 681.395 kb on - strand, within Synpcc7942_0686at 681.395 kb on - strand, within Synpcc7942_0686at 681.395 kb on - strand, within Synpcc7942_0686at 681.400 kb on - strand, within Synpcc7942_0686at 681.482 kb on + strand, within Synpcc7942_0686at 681.484 kb on + strand, within Synpcc7942_0686at 681.484 kb on + strandat 681.490 kb on - strand, within Synpcc7942_0686at 681.492 kb on - strand, within Synpcc7942_0686at 681.525 kb on + strand, within Synpcc7942_0686at 681.539 kb on + strand, within Synpcc7942_0686at 681.539 kb on + strand, within Synpcc7942_0686at 681.539 kb on + strand, within Synpcc7942_0686at 681.593 kb on + strand, within Synpcc7942_0686at 681.615 kb on + strand, within Synpcc7942_0686at 681.615 kb on - strand, within Synpcc7942_0686at 681.615 kb on - strand, within Synpcc7942_0686at 681.652 kb on + strand, within Synpcc7942_0686at 681.652 kb on + strand, within Synpcc7942_0686at 681.652 kb on + strand, within Synpcc7942_0686at 681.652 kb on + strand, within Synpcc7942_0686at 681.652 kb on + strand, within Synpcc7942_0686at 681.660 kb on - strand, within Synpcc7942_0686at 681.660 kb on - strand, within Synpcc7942_0686at 681.671 kb on - strand, within Synpcc7942_0686at 681.680 kb on - strand, within Synpcc7942_0686at 681.686 kb on - strand, within Synpcc7942_0686at 681.760 kb on + strand, within Synpcc7942_0686at 681.767 kb on - strand, within Synpcc7942_0686at 681.814 kb on + strand, within Synpcc7942_0686at 681.819 kb on + strand, within Synpcc7942_0686at 681.822 kb on - strand, within Synpcc7942_0686at 681.848 kb on - strand, within Synpcc7942_0686at 681.850 kb on + strand, within Synpcc7942_0686at 681.865 kb on + strand, within Synpcc7942_0686at 681.869 kb on + strand, within Synpcc7942_0686at 681.870 kb on + strand, within Synpcc7942_0686at 681.882 kb on - strand, within Synpcc7942_0686at 681.883 kb on - strand, within Synpcc7942_0686at 681.904 kb on + strand, within Synpcc7942_0686at 681.925 kb on - strand, within Synpcc7942_0686at 681.926 kb on - strand, within Synpcc7942_0686at 681.928 kb on + strand, within Synpcc7942_0686at 681.928 kb on + strand, within Synpcc7942_0686at 681.928 kb on + strand, within Synpcc7942_0686at 681.936 kb on - strand, within Synpcc7942_0686at 681.938 kb on + strand, within Synpcc7942_0686at 681.938 kb on + strand, within Synpcc7942_0686at 681.938 kb on + strand, within Synpcc7942_0686at 681.946 kb on - strand, within Synpcc7942_0686at 682.021 kb on - strandat 682.026 kb on - strandat 682.026 kb on - strandat 682.027 kb on + strandat 682.028 kb on + strandat 682.051 kb on - strandat 682.053 kb on - strandat 682.077 kb on + strandat 682.077 kb on + strandat 682.077 kb on + strandat 682.077 kb on + strandat 682.085 kb on - strandat 682.085 kb on - strandat 682.107 kb on - strandat 682.113 kb on - strandat 682.124 kb on + strandat 682.124 kb on + strandat 682.127 kb on - strandat 682.141 kb on - strandat 682.153 kb on + strandat 682.153 kb on + strandat 682.153 kb on + strandat 682.161 kb on - strandat 682.221 kb on - strandat 682.222 kb on - strandat 682.299 kb on + strand, within Synpcc7942_0687at 682.311 kb on + strand, within Synpcc7942_0687at 682.326 kb on + strand, within Synpcc7942_0687at 682.349 kb on + strand, within Synpcc7942_0687at 682.352 kb on - strand, within Synpcc7942_0687at 682.352 kb on - strand, within Synpcc7942_0687at 682.352 kb on - strand, within Synpcc7942_0687at 682.354 kb on + strand, within Synpcc7942_0687at 682.354 kb on + strand, within Synpcc7942_0687at 682.357 kb on - strand, within Synpcc7942_0687at 682.357 kb on - strand, within Synpcc7942_0687at 682.367 kb on - strand, within Synpcc7942_0687at 682.367 kb on - strand, within Synpcc7942_0687at 682.384 kb on + strand, within Synpcc7942_0687at 682.391 kb on + strand, within Synpcc7942_0687at 682.395 kb on + strand, within Synpcc7942_0687at 682.405 kb on + strand, within Synpcc7942_0687at 682.405 kb on + strand, within Synpcc7942_0687at 682.405 kb on + strand, within Synpcc7942_0687at 682.445 kb on - strand, within Synpcc7942_0687at 682.475 kb on + strand, within Synpcc7942_0687at 682.477 kb on - strand, within Synpcc7942_0687at 682.486 kb on + strand, within Synpcc7942_0687at 682.498 kb on + strand, within Synpcc7942_0687at 682.498 kb on + strand, within Synpcc7942_0687at 682.498 kb on + strand, within Synpcc7942_0687at 682.498 kb on + strand, within Synpcc7942_0687at 682.506 kb on - strand, within Synpcc7942_0687at 682.507 kb on - strand, within Synpcc7942_0687at 682.519 kb on - strand, within Synpcc7942_0687at 682.552 kb on + strand, within Synpcc7942_0687at 682.552 kb on + strand, within Synpcc7942_0687at 682.552 kb on + strand, within Synpcc7942_0687at 682.560 kb on - strand, within Synpcc7942_0687at 682.619 kb on - strand, within Synpcc7942_0687at 682.623 kb on + strand, within Synpcc7942_0687at 682.626 kb on - strand, within Synpcc7942_0687at 682.628 kb on + strand, within Synpcc7942_0687at 682.628 kb on + strand, within Synpcc7942_0687at 682.628 kb on + strand, within Synpcc7942_0687at 682.628 kb on + strand, within Synpcc7942_0687at 682.628 kb on + strand, within Synpcc7942_0687at 682.628 kb on + strand, within Synpcc7942_0687at 682.628 kb on + strand, within Synpcc7942_0687at 682.628 kb on + strand, within Synpcc7942_0687at 682.636 kb on - strand, within Synpcc7942_0687at 682.636 kb on - strand, within Synpcc7942_0687at 682.636 kb on - strand, within Synpcc7942_0687at 682.636 kb on - strand, within Synpcc7942_0687at 682.636 kb on - strand, within Synpcc7942_0687at 682.636 kb on - strand, within Synpcc7942_0687at 682.636 kb on - strand, within Synpcc7942_0687at 682.636 kb on - strand, within Synpcc7942_0687at 682.636 kb on - strand, within Synpcc7942_0687at 682.654 kb on + strand, within Synpcc7942_0687at 682.662 kb on - strand, within Synpcc7942_0687at 682.687 kb on - strand, within Synpcc7942_0687at 682.713 kb on - strand, within Synpcc7942_0687at 682.735 kb on + strand, within Synpcc7942_0687at 682.743 kb on - strand, within Synpcc7942_0687at 682.743 kb on - strand, within Synpcc7942_0687at 682.743 kb on - strand, within Synpcc7942_0687at 682.753 kb on - strand, within Synpcc7942_0687at 682.754 kb on + strand, within Synpcc7942_0687at 682.771 kb on + strand, within Synpcc7942_0687at 682.787 kb on + strand, within Synpcc7942_0687at 682.789 kb on - strand, within Synpcc7942_0687at 682.795 kb on - strand, within Synpcc7942_0687at 682.803 kb on + strand, within Synpcc7942_0687at 682.825 kb on + strand, within Synpcc7942_0687at 682.830 kb on + strand, within Synpcc7942_0687at 682.838 kb on - strand, within Synpcc7942_0687at 682.916 kb on + strand, within Synpcc7942_0687at 682.916 kb on + strand, within Synpcc7942_0687at 682.922 kb on - strand, within Synpcc7942_0687at 682.924 kb on - strand, within Synpcc7942_0687at 682.924 kb on - strand, within Synpcc7942_0687at 682.924 kb on - strand, within Synpcc7942_0687at 683.097 kb on + strand, within Synpcc7942_0687at 683.105 kb on + strand, within Synpcc7942_0687at 683.116 kb on - strand, within Synpcc7942_0687at 683.116 kb on - strand, within Synpcc7942_0687at 683.121 kb on - strand, within Synpcc7942_0687at 683.189 kb on + strand, within Synpcc7942_0687at 683.236 kb on + strand, within Synpcc7942_0687at 683.237 kb on + strand, within Synpcc7942_0687at 683.315 kb on + strand, within Synpcc7942_0687at 683.426 kb on - strand, within Synpcc7942_0687at 683.455 kb on + strand, within Synpcc7942_0687at 683.460 kb on - strand, within Synpcc7942_0687at 683.473 kb on - strand, within Synpcc7942_0687at 683.522 kb on + strand, within Synpcc7942_0687at 683.527 kb on + strand, within Synpcc7942_0687at 683.535 kb on - strand, within Synpcc7942_0687at 683.551 kb on + strand, within Synpcc7942_0687at 683.602 kb on - strandat 683.654 kb on + strandat 683.661 kb on - strandat 683.663 kb on + strandat 683.665 kb on + strandat 683.671 kb on + strandat 683.673 kb on - strandat 683.686 kb on + strandat 683.730 kb on + strandat 683.798 kb on - strand, within Synpcc7942_0688at 683.827 kb on + strand, within Synpcc7942_0688at 683.845 kb on - strand, within Synpcc7942_0688at 683.852 kb on + strand, within Synpcc7942_0688at 683.886 kb on + strand, within Synpcc7942_0688at 683.897 kb on + strand, within Synpcc7942_0688at 683.897 kb on + strand, within Synpcc7942_0688at 683.897 kb on + strand, within Synpcc7942_0688at 683.923 kb on - strand, within Synpcc7942_0688at 683.926 kb on + strand, within Synpcc7942_0688at 683.940 kb on - strand, within Synpcc7942_0688at 683.944 kb on + strand, within Synpcc7942_0688at 683.975 kb on + strand, within Synpcc7942_0688at 683.983 kb on - strand, within Synpcc7942_0688at 683.983 kb on - strand, within Synpcc7942_0688at 683.983 kb on - strand, within Synpcc7942_0688at 683.983 kb on - strand, within Synpcc7942_0688at 684.001 kb on - strand, within Synpcc7942_0688at 684.020 kb on + strand, within Synpcc7942_0688at 684.024 kb on + strand, within Synpcc7942_0688at 684.028 kb on - strandat 684.103 kb on - strandat 684.103 kb on - strandat 684.103 kb on - strandat 684.103 kb on - strandat 684.108 kb on - strandat 684.108 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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681,138 - Synpcc7942_0686 0.14 +0.8
681,232 + Synpcc7942_0686 0.22 +0.0
681,235 - Synpcc7942_0686 0.22 +0.5
681,325 + Synpcc7942_0686 0.30 -1.1
681,387 + Synpcc7942_0686 0.35 +0.7
681,387 + Synpcc7942_0686 0.35 -3.3
681,387 + Synpcc7942_0686 0.35 +1.4
681,395 - Synpcc7942_0686 0.36 -0.1
681,395 - Synpcc7942_0686 0.36 +0.2
681,395 - Synpcc7942_0686 0.36 +1.0
681,395 - Synpcc7942_0686 0.36 +2.3
681,400 - Synpcc7942_0686 0.36 +0.9
681,482 + Synpcc7942_0686 0.43 -0.1
681,484 + Synpcc7942_0686 0.44 +0.9
681,484 + -0.7
681,490 - Synpcc7942_0686 0.44 +1.9
681,492 - Synpcc7942_0686 0.44 -2.9
681,525 + Synpcc7942_0686 0.47 +1.1
681,539 + Synpcc7942_0686 0.48 -1.2
681,539 + Synpcc7942_0686 0.48 -0.0
681,539 + Synpcc7942_0686 0.48 -0.8
681,593 + Synpcc7942_0686 0.53 -1.1
681,615 + Synpcc7942_0686 0.55 +1.4
681,615 - Synpcc7942_0686 0.55 -0.1
681,615 - Synpcc7942_0686 0.55 +0.9
681,652 + Synpcc7942_0686 0.58 +0.2
681,652 + Synpcc7942_0686 0.58 +0.3
681,652 + Synpcc7942_0686 0.58 +0.9
681,652 + Synpcc7942_0686 0.58 +0.7
681,652 + Synpcc7942_0686 0.58 +0.1
681,660 - Synpcc7942_0686 0.59 +0.2
681,660 - Synpcc7942_0686 0.59 -1.1
681,671 - Synpcc7942_0686 0.60 -1.7
681,680 - Synpcc7942_0686 0.60 +2.8
681,686 - Synpcc7942_0686 0.61 -0.9
681,760 + Synpcc7942_0686 0.67 +0.1
681,767 - Synpcc7942_0686 0.68 +0.8
681,814 + Synpcc7942_0686 0.72 +0.8
681,819 + Synpcc7942_0686 0.72 +2.0
681,822 - Synpcc7942_0686 0.73 +0.9
681,848 - Synpcc7942_0686 0.75 +1.9
681,850 + Synpcc7942_0686 0.75 -0.1
681,865 + Synpcc7942_0686 0.76 -0.4
681,869 + Synpcc7942_0686 0.77 -1.2
681,870 + Synpcc7942_0686 0.77 -0.5
681,882 - Synpcc7942_0686 0.78 -1.7
681,883 - Synpcc7942_0686 0.78 -0.9
681,904 + Synpcc7942_0686 0.80 +0.4
681,925 - Synpcc7942_0686 0.82 +0.7
681,926 - Synpcc7942_0686 0.82 +0.1
681,928 + Synpcc7942_0686 0.82 -0.7
681,928 + Synpcc7942_0686 0.82 -1.5
681,928 + Synpcc7942_0686 0.82 -0.9
681,936 - Synpcc7942_0686 0.83 -1.1
681,938 + Synpcc7942_0686 0.83 +0.9
681,938 + Synpcc7942_0686 0.83 +0.5
681,938 + Synpcc7942_0686 0.83 +0.2
681,946 - Synpcc7942_0686 0.83 +0.3
682,021 - +1.2
682,026 - -0.1
682,026 - +0.4
682,027 + -0.4
682,028 + +0.9
682,051 - -0.6
682,053 - +0.9
682,077 + -0.3
682,077 + -0.7
682,077 + -0.4
682,077 + -2.5
682,085 - -0.5
682,085 - +1.4
682,107 - -0.3
682,113 - +0.6
682,124 + +1.6
682,124 + +2.4
682,127 - +0.1
682,141 - -0.4
682,153 + +0.1
682,153 + -1.1
682,153 + -1.3
682,161 - -1.4
682,221 - +0.2
682,222 - +0.3
682,299 + Synpcc7942_0687 0.11 -3.7
682,311 + Synpcc7942_0687 0.11 -0.1
682,326 + Synpcc7942_0687 0.12 -1.4
682,349 + Synpcc7942_0687 0.14 -2.1
682,352 - Synpcc7942_0687 0.14 -1.7
682,352 - Synpcc7942_0687 0.14 -0.7
682,352 - Synpcc7942_0687 0.14 -1.1
682,354 + Synpcc7942_0687 0.14 -2.0
682,354 + Synpcc7942_0687 0.14 -0.4
682,357 - Synpcc7942_0687 0.14 -1.9
682,357 - Synpcc7942_0687 0.14 -2.7
682,367 - Synpcc7942_0687 0.15 -1.1
682,367 - Synpcc7942_0687 0.15 -2.5
682,384 + Synpcc7942_0687 0.16 -2.9
682,391 + Synpcc7942_0687 0.16 -1.1
682,395 + Synpcc7942_0687 0.16 -1.1
682,405 + Synpcc7942_0687 0.17 -1.1
682,405 + Synpcc7942_0687 0.17 -2.5
682,405 + Synpcc7942_0687 0.17 +0.3
682,445 - Synpcc7942_0687 0.20 -2.5
682,475 + Synpcc7942_0687 0.21 -1.9
682,477 - Synpcc7942_0687 0.22 -1.3
682,486 + Synpcc7942_0687 0.22 -1.5
682,498 + Synpcc7942_0687 0.23 -2.3
682,498 + Synpcc7942_0687 0.23 -0.7
682,498 + Synpcc7942_0687 0.23 -1.1
682,498 + Synpcc7942_0687 0.23 -2.1
682,506 - Synpcc7942_0687 0.23 -1.4
682,507 - Synpcc7942_0687 0.23 -0.1
682,519 - Synpcc7942_0687 0.24 -0.1
682,552 + Synpcc7942_0687 0.26 -0.3
682,552 + Synpcc7942_0687 0.26 -1.7
682,552 + Synpcc7942_0687 0.26 -1.4
682,560 - Synpcc7942_0687 0.27 -2.1
682,619 - Synpcc7942_0687 0.30 -0.1
682,623 + Synpcc7942_0687 0.31 -0.7
682,626 - Synpcc7942_0687 0.31 -0.1
682,628 + Synpcc7942_0687 0.31 -1.1
682,628 + Synpcc7942_0687 0.31 -1.6
682,628 + Synpcc7942_0687 0.31 -0.7
682,628 + Synpcc7942_0687 0.31 -0.1
682,628 + Synpcc7942_0687 0.31 -1.1
682,628 + Synpcc7942_0687 0.31 -3.5
682,628 + Synpcc7942_0687 0.31 -1.3
682,628 + Synpcc7942_0687 0.31 -2.5
682,636 - Synpcc7942_0687 0.31 -1.1
682,636 - Synpcc7942_0687 0.31 -0.1
682,636 - Synpcc7942_0687 0.31 -1.1
682,636 - Synpcc7942_0687 0.31 -4.3
682,636 - Synpcc7942_0687 0.31 -1.6
682,636 - Synpcc7942_0687 0.31 -0.1
682,636 - Synpcc7942_0687 0.31 -3.8
682,636 - Synpcc7942_0687 0.31 -1.7
682,636 - Synpcc7942_0687 0.31 -0.6
682,654 + Synpcc7942_0687 0.32 -1.3
682,662 - Synpcc7942_0687 0.33 -1.7
682,687 - Synpcc7942_0687 0.35 -0.1
682,713 - Synpcc7942_0687 0.36 -2.3
682,735 + Synpcc7942_0687 0.37 -2.9
682,743 - Synpcc7942_0687 0.38 -1.4
682,743 - Synpcc7942_0687 0.38 -1.7
682,743 - Synpcc7942_0687 0.38 -1.2
682,753 - Synpcc7942_0687 0.39 -3.3
682,754 + Synpcc7942_0687 0.39 -1.6
682,771 + Synpcc7942_0687 0.40 -2.5
682,787 + Synpcc7942_0687 0.41 -1.3
682,789 - Synpcc7942_0687 0.41 -1.4
682,795 - Synpcc7942_0687 0.41 +0.3
682,803 + Synpcc7942_0687 0.42 -1.7
682,825 + Synpcc7942_0687 0.43 -2.3
682,830 + Synpcc7942_0687 0.43 -2.6
682,838 - Synpcc7942_0687 0.44 -2.3
682,916 + Synpcc7942_0687 0.49 -3.5
682,916 + Synpcc7942_0687 0.49 -1.5
682,922 - Synpcc7942_0687 0.49 -2.4
682,924 - Synpcc7942_0687 0.49 -0.8
682,924 - Synpcc7942_0687 0.49 -1.1
682,924 - Synpcc7942_0687 0.49 -2.1
683,097 + Synpcc7942_0687 0.60 -0.1
683,105 + Synpcc7942_0687 0.60 -2.9
683,116 - Synpcc7942_0687 0.61 -0.7
683,116 - Synpcc7942_0687 0.61 -1.6
683,121 - Synpcc7942_0687 0.61 -0.7
683,189 + Synpcc7942_0687 0.65 -2.7
683,236 + Synpcc7942_0687 0.68 -0.7
683,237 + Synpcc7942_0687 0.68 -2.5
683,315 + Synpcc7942_0687 0.73 -1.9
683,426 - Synpcc7942_0687 0.80 -2.5
683,455 + Synpcc7942_0687 0.82 -2.9
683,460 - Synpcc7942_0687 0.82 -1.6
683,473 - Synpcc7942_0687 0.83 +2.4
683,522 + Synpcc7942_0687 0.86 -1.8
683,527 + Synpcc7942_0687 0.86 -2.5
683,535 - Synpcc7942_0687 0.87 -2.5
683,551 + Synpcc7942_0687 0.88 -0.1
683,602 - -2.0
683,654 + -1.9
683,661 - -1.7
683,663 + -2.5
683,665 + -0.7
683,671 + -2.1
683,673 - -2.2
683,686 + -0.4
683,730 + -0.8
683,798 - Synpcc7942_0688 0.22 -1.7
683,827 + Synpcc7942_0688 0.31 -2.9
683,845 - Synpcc7942_0688 0.36 +1.6
683,852 + Synpcc7942_0688 0.38 +1.4
683,886 + Synpcc7942_0688 0.48 +1.1
683,897 + Synpcc7942_0688 0.52 +1.2
683,897 + Synpcc7942_0688 0.52 +0.1
683,897 + Synpcc7942_0688 0.52 -1.0
683,923 - Synpcc7942_0688 0.59 +0.1
683,926 + Synpcc7942_0688 0.60 -0.7
683,940 - Synpcc7942_0688 0.64 +0.2
683,944 + Synpcc7942_0688 0.65 +0.1
683,975 + Synpcc7942_0688 0.75 -2.9
683,983 - Synpcc7942_0688 0.77 -1.1
683,983 - Synpcc7942_0688 0.77 -0.8
683,983 - Synpcc7942_0688 0.77 +0.5
683,983 - Synpcc7942_0688 0.77 -0.3
684,001 - Synpcc7942_0688 0.82 -0.5
684,020 + Synpcc7942_0688 0.88 +1.0
684,024 + Synpcc7942_0688 0.89 -0.1
684,028 - +1.0
684,103 - +0.7
684,103 - +0.7
684,103 - -0.3
684,103 - +2.4
684,108 - -0.1
684,108 - -0.9

Or see this region's nucleotide sequence