Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0117 and gatB are separated by 220 nucleotides gatB and Synpcc7942_0119 are separated by 307 nucleotides
Synpcc7942_0117: Synpcc7942_0117 - thiol methyltransferase 1-like, at 115,391 to 116,722
_0117
Synpcc7942_0118: gatB - aspartyl/glutamyl-tRNA amidotransferase subunit B, at 116,943 to 118,427
gatB
Synpcc7942_0119: Synpcc7942_0119 - hypothetical protein, at 118,735 to 119,292
_0119
Position (kb)
116
117
118
119 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 116.040 kb on + strand, within Synpcc7942_0117 at 116.268 kb on - strand, within Synpcc7942_0117 at 116.279 kb on - strand, within Synpcc7942_0117 at 116.280 kb on - strand, within Synpcc7942_0117 at 116.439 kb on - strand, within Synpcc7942_0117 at 116.520 kb on + strand, within Synpcc7942_0117 at 116.576 kb on - strand, within Synpcc7942_0117 at 116.685 kb on + strand at 116.688 kb on + strand at 116.770 kb on + strand at 116.770 kb on + strand at 116.770 kb on + strand at 116.770 kb on + strand at 116.770 kb on + strand at 116.770 kb on + strand at 116.778 kb on - strand at 116.778 kb on - strand at 116.778 kb on - strand at 116.778 kb on - strand at 116.778 kb on - strand at 116.824 kb on - strand at 116.897 kb on + strand at 116.897 kb on + strand at 116.902 kb on + strand at 116.905 kb on - strand at 116.905 kb on - strand at 116.910 kb on - strand at 118.422 kb on + strand at 118.460 kb on + strand at 118.460 kb on + strand at 118.460 kb on + strand at 118.460 kb on + strand at 118.468 kb on - strand at 118.479 kb on + strand at 118.491 kb on + strand at 118.535 kb on - strand at 118.566 kb on - strand at 118.570 kb on + strand at 118.571 kb on - strand at 118.575 kb on + strand at 118.606 kb on - strand at 118.608 kb on + strand at 118.686 kb on + strand at 118.734 kb on + strand at 118.739 kb on + strand at 118.740 kb on - strand at 118.765 kb on + strand at 118.783 kb on - strand at 118.797 kb on - strand, within Synpcc7942_0119 at 118.823 kb on + strand, within Synpcc7942_0119 at 118.914 kb on - strand, within Synpcc7942_0119 at 118.921 kb on + strand, within Synpcc7942_0119 at 118.921 kb on + strand, within Synpcc7942_0119 at 118.921 kb on + strand at 118.921 kb on + strand, within Synpcc7942_0119 at 118.943 kb on - strand, within Synpcc7942_0119 at 118.948 kb on + strand, within Synpcc7942_0119 at 118.948 kb on - strand, within Synpcc7942_0119 at 118.951 kb on - strand, within Synpcc7942_0119 at 118.956 kb on - strand, within Synpcc7942_0119 at 118.957 kb on + strand, within Synpcc7942_0119 at 118.965 kb on - strand, within Synpcc7942_0119 at 118.965 kb on - strand, within Synpcc7942_0119 at 118.965 kb on - strand, within Synpcc7942_0119 at 118.978 kb on - strand, within Synpcc7942_0119 at 118.993 kb on + strand, within Synpcc7942_0119 at 118.993 kb on + strand, within Synpcc7942_0119 at 119.071 kb on - strand, within Synpcc7942_0119 at 119.071 kb on - strand, within Synpcc7942_0119 at 119.080 kb on + strand at 119.220 kb on + strand, within Synpcc7942_0119 at 119.230 kb on - strand, within Synpcc7942_0119 at 119.240 kb on + strand at 119.375 kb on + strand at 119.397 kb on - strand at 119.401 kb on + strand at 119.401 kb on + strand at 119.408 kb on + strand at 119.408 kb on + strand at 119.408 kb on + strand at 119.408 kb on + strand at 119.408 kb on + strand at 119.408 kb on + strand at 119.408 kb on + strand at 119.408 kb on + strand at 119.408 kb on + strand at 119.408 kb on + strand at 119.408 kb on + strand at 119.413 kb on + strand at 119.416 kb on - strand at 119.416 kb on - strand at 119.416 kb on - strand at 119.416 kb on - strand at 119.416 kb on - strand at 119.416 kb on - strand at 119.416 kb on - strand at 119.416 kb on - strand at 119.416 kb on - strand at 119.416 kb on - strand at 119.416 kb on - strand at 119.423 kb on + strand at 119.423 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 116,040 + Synpcc7942_0117 0.49 -1.1 116,268 - Synpcc7942_0117 0.66 -1.1 116,279 - Synpcc7942_0117 0.67 +0.5 116,280 - Synpcc7942_0117 0.67 -0.5 116,439 - Synpcc7942_0117 0.79 -1.1 116,520 + Synpcc7942_0117 0.85 -0.4 116,576 - Synpcc7942_0117 0.89 +1.0 116,685 + +1.2 116,688 + +0.6 116,770 + +0.2 116,770 + +1.3 116,770 + +2.1 116,770 + -1.5 116,770 + +1.5 116,770 + +1.4 116,778 - -2.1 116,778 - +0.4 116,778 - -0.1 116,778 - -0.2 116,778 - -0.7 116,824 - +0.8 116,897 + -1.2 116,897 + -1.2 116,902 + +1.1 116,905 - -1.4 116,905 - +1.0 116,910 - +0.0 118,422 + -0.2 118,460 + -1.2 118,460 + +0.0 118,460 + +0.9 118,460 + -1.1 118,468 - +0.4 118,479 + +0.8 118,491 + +1.2 118,535 - -0.1 118,566 - -0.1 118,570 + -0.5 118,571 - -0.1 118,575 + +0.0 118,606 - +2.5 118,608 + +0.2 118,686 + +0.1 118,734 + +0.2 118,739 + +1.5 118,740 - +1.9 118,765 + -2.1 118,783 - -0.7 118,797 - Synpcc7942_0119 0.11 +0.7 118,823 + Synpcc7942_0119 0.16 -0.7 118,914 - Synpcc7942_0119 0.32 -3.1 118,921 + Synpcc7942_0119 0.33 -2.4 118,921 + Synpcc7942_0119 0.33 +0.7 118,921 + +0.5 118,921 + Synpcc7942_0119 0.33 +1.9 118,943 - Synpcc7942_0119 0.37 +2.5 118,948 + Synpcc7942_0119 0.38 -3.1 118,948 - Synpcc7942_0119 0.38 -1.4 118,951 - Synpcc7942_0119 0.39 -0.4 118,956 - Synpcc7942_0119 0.40 -0.2 118,957 + Synpcc7942_0119 0.40 -2.8 118,965 - Synpcc7942_0119 0.41 +0.5 118,965 - Synpcc7942_0119 0.41 +0.0 118,965 - Synpcc7942_0119 0.41 -2.1 118,978 - Synpcc7942_0119 0.44 +1.2 118,993 + Synpcc7942_0119 0.46 +0.6 118,993 + Synpcc7942_0119 0.46 -0.7 119,071 - Synpcc7942_0119 0.60 -1.4 119,071 - Synpcc7942_0119 0.60 -1.1 119,080 + +0.3 119,220 + Synpcc7942_0119 0.87 +0.9 119,230 - Synpcc7942_0119 0.89 +1.1 119,240 + -0.8 119,375 + -2.4 119,397 - +1.5 119,401 + +0.9 119,401 + -0.2 119,408 + +1.3 119,408 + -0.7 119,408 + -1.3 119,408 + +1.2 119,408 + -1.1 119,408 + +1.2 119,408 + -1.1 119,408 + -0.8 119,408 + -0.9 119,408 + -1.1 119,408 + +1.0 119,413 + +0.2 119,416 - -1.2 119,416 - -0.7 119,416 - +1.3 119,416 - +0.9 119,416 - -1.9 119,416 - +1.1 119,416 - -0.5 119,416 - +0.8 119,416 - +0.5 119,416 - -0.9 119,416 - +1.9 119,423 + +1.1 119,423 + -1.3
Or see this region's nucleotide sequence