Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32740

Experiment: R2A with Nickel (II) chloride 0.35 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS32735 and RR42_RS32740 are separated by 44 nucleotidesRR42_RS32740 and RR42_RS32745 are separated by 109 nucleotides RR42_RS32735: RR42_RS32735 - 3-methylcrotonyl-CoA carboxylase, at 2,738,477 to 2,740,501 _RS32735 RR42_RS32740: RR42_RS32740 - enoyl-CoA hydratase, at 2,740,546 to 2,741,367 _RS32740 RR42_RS32745: RR42_RS32745 - acyl-CoA dehydrogenase, at 2,741,477 to 2,742,637 _RS32745 Position (kb) 2740 2741 2742Strain fitness (log2 ratio) -1 0 1 2at 2739.631 kb on - strand, within RR42_RS32735at 2740.523 kb on + strandat 2740.524 kb on - strandat 2741.106 kb on - strand, within RR42_RS32740at 2741.413 kb on - strandat 2741.712 kb on + strand, within RR42_RS32745at 2741.712 kb on + strand, within RR42_RS32745at 2741.712 kb on + strand, within RR42_RS32745at 2741.712 kb on + strand, within RR42_RS32745at 2741.713 kb on - strand, within RR42_RS32745at 2741.713 kb on - strand, within RR42_RS32745at 2741.730 kb on + strand, within RR42_RS32745at 2741.925 kb on + strand, within RR42_RS32745at 2741.930 kb on - strand, within RR42_RS32745at 2741.930 kb on - strand, within RR42_RS32745at 2742.124 kb on + strand, within RR42_RS32745at 2742.125 kb on - strand, within RR42_RS32745at 2742.195 kb on + strand, within RR42_RS32745at 2742.196 kb on - strand, within RR42_RS32745at 2742.356 kb on - strand, within RR42_RS32745

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.35 mM
remove
2,739,631 - RR42_RS32735 0.57 +0.8
2,740,523 + -0.0
2,740,524 - -0.0
2,741,106 - RR42_RS32740 0.68 -1.5
2,741,413 - -0.2
2,741,712 + RR42_RS32745 0.20 -1.0
2,741,712 + RR42_RS32745 0.20 -0.8
2,741,712 + RR42_RS32745 0.20 +0.8
2,741,712 + RR42_RS32745 0.20 +0.8
2,741,713 - RR42_RS32745 0.20 +1.2
2,741,713 - RR42_RS32745 0.20 +1.8
2,741,730 + RR42_RS32745 0.22 +0.1
2,741,925 + RR42_RS32745 0.39 +0.5
2,741,930 - RR42_RS32745 0.39 +0.6
2,741,930 - RR42_RS32745 0.39 +0.4
2,742,124 + RR42_RS32745 0.56 +0.1
2,742,125 - RR42_RS32745 0.56 +0.9
2,742,195 + RR42_RS32745 0.62 +0.3
2,742,196 - RR42_RS32745 0.62 +0.8
2,742,356 - RR42_RS32745 0.76 -1.2

Or see this region's nucleotide sequence