Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18120

Experiment: R2A with Nickel (II) chloride 0.35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS18115 and RR42_RS18120 are separated by 7 nucleotidesRR42_RS18120 and RR42_RS18125 are separated by 446 nucleotides RR42_RS18115: RR42_RS18115 - 16S rRNA methyltransferase, at 3,920,837 to 3,921,850 _RS18115 RR42_RS18120: RR42_RS18120 - cell division protein MraZ, at 3,921,858 to 3,922,286 _RS18120 RR42_RS18125: RR42_RS18125 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 3,922,733 to 3,923,356 _RS18125 Position (kb) 3921 3922 3923Strain fitness (log2 ratio) -2 -1 0 1at 3922.210 kb on - strand, within RR42_RS18120at 3922.290 kb on - strandat 3922.290 kb on - strandat 3922.290 kb on - strandat 3922.290 kb on - strandat 3922.290 kb on - strandat 3922.290 kb on - strandat 3922.412 kb on - strandat 3922.424 kb on - strandat 3922.552 kb on - strandat 3922.552 kb on - strandat 3922.642 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.35 mM
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3,922,210 - RR42_RS18120 0.82 +0.5
3,922,290 - -0.2
3,922,290 - -1.1
3,922,290 - -1.9
3,922,290 - -1.6
3,922,290 - -1.1
3,922,290 - +1.0
3,922,412 - +0.6
3,922,424 - +0.3
3,922,552 - -0.3
3,922,552 - +1.2
3,922,642 - +0.7

Or see this region's nucleotide sequence