Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11380

Experiment: R2A with Nickel (II) chloride 0.35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS11375 and RR42_RS11380 are separated by 113 nucleotidesRR42_RS11380 and RR42_RS11385 are separated by 76 nucleotidesRR42_RS11385 and RR42_RS11390 are separated by 67 nucleotides RR42_RS11375: RR42_RS11375 - peptidase S66, at 2,436,600 to 2,437,574 _RS11375 RR42_RS11380: RR42_RS11380 - hypothetical protein, at 2,437,688 to 2,438,197 _RS11380 RR42_RS11385: RR42_RS11385 - 6-carboxy-5,6,7,8-tetrahydropterin synthase, at 2,438,274 to 2,438,750 _RS11385 RR42_RS11390: RR42_RS11390 - 7-cyano-7-deazaguanine reductase, at 2,438,818 to 2,439,465 _RS11390 Position (kb) 2437 2438 2439Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2437.673 kb on + strandat 2437.674 kb on - strandat 2437.685 kb on + strandat 2437.685 kb on + strandat 2437.686 kb on - strandat 2437.686 kb on - strandat 2437.686 kb on - strandat 2438.167 kb on - strandat 2438.794 kb on - strandat 2438.967 kb on - strand, within RR42_RS11390

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.35 mM
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2,437,673 + -0.6
2,437,674 - -0.2
2,437,685 + -4.0
2,437,685 + -4.2
2,437,686 - +0.7
2,437,686 - -0.7
2,437,686 - -0.6
2,438,167 - +1.2
2,438,794 - +0.5
2,438,967 - RR42_RS11390 0.23 -0.3

Or see this region's nucleotide sequence