Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06575

Experiment: R2A with Nickel (II) chloride 0.35 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS06565 and RR42_RS06570 are separated by 14 nucleotidesRR42_RS06570 and RR42_RS06575 are separated by 202 nucleotidesRR42_RS06575 and RR42_RS06580 are separated by 62 nucleotidesRR42_RS06580 and RR42_RS06585 are separated by 15 nucleotides RR42_RS06565: RR42_RS06565 - metal-binding protein, at 1,435,290 to 1,435,784 _RS06565 RR42_RS06570: RR42_RS06570 - 3-hydroxybutyrate dehydrogenase, at 1,435,799 to 1,436,575 _RS06570 RR42_RS06575: RR42_RS06575 - alpha/beta hydrolase, at 1,436,778 to 1,437,665 _RS06575 RR42_RS06580: RR42_RS06580 - aminoacrylate peracid reductase, at 1,437,728 to 1,438,090 _RS06580 RR42_RS06585: RR42_RS06585 - GTP pyrophosphokinase, at 1,438,106 to 1,440,328 _RS06585 Position (kb) 1436 1437 1438Strain fitness (log2 ratio) -2 -1 0 1at 1435.967 kb on - strand, within RR42_RS06570at 1436.119 kb on - strand, within RR42_RS06570at 1436.119 kb on - strand, within RR42_RS06570at 1436.119 kb on - strand, within RR42_RS06570at 1436.119 kb on - strand, within RR42_RS06570at 1436.570 kb on - strandat 1436.686 kb on + strandat 1436.687 kb on - strandat 1436.687 kb on - strandat 1436.701 kb on - strandat 1436.760 kb on + strandat 1436.760 kb on + strandat 1436.848 kb on - strandat 1436.848 kb on - strandat 1436.956 kb on - strand, within RR42_RS06575at 1436.956 kb on - strand, within RR42_RS06575at 1436.978 kb on - strand, within RR42_RS06575at 1436.978 kb on - strand, within RR42_RS06575at 1437.022 kb on - strand, within RR42_RS06575at 1437.036 kb on + strandat 1437.037 kb on - strand, within RR42_RS06575at 1437.037 kb on - strand, within RR42_RS06575at 1437.037 kb on - strand, within RR42_RS06575at 1437.037 kb on - strand, within RR42_RS06575at 1437.037 kb on - strand, within RR42_RS06575at 1437.222 kb on + strand, within RR42_RS06575at 1437.222 kb on + strand, within RR42_RS06575at 1437.223 kb on - strand, within RR42_RS06575at 1437.223 kb on - strand, within RR42_RS06575at 1437.388 kb on - strand, within RR42_RS06575at 1437.499 kb on + strand, within RR42_RS06575at 1437.639 kb on - strandat 1437.717 kb on - strandat 1437.780 kb on - strand, within RR42_RS06580at 1437.803 kb on + strand, within RR42_RS06580at 1437.803 kb on + strand, within RR42_RS06580at 1437.804 kb on - strand, within RR42_RS06580at 1437.804 kb on - strand, within RR42_RS06580at 1438.006 kb on + strand, within RR42_RS06580at 1438.053 kb on - strand, within RR42_RS06580at 1438.411 kb on + strand, within RR42_RS06585at 1438.411 kb on + strand, within RR42_RS06585at 1438.637 kb on + strand, within RR42_RS06585at 1438.637 kb on + strand, within RR42_RS06585

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.35 mM
remove
1,435,967 - RR42_RS06570 0.22 +0.1
1,436,119 - RR42_RS06570 0.41 -0.4
1,436,119 - RR42_RS06570 0.41 +1.1
1,436,119 - RR42_RS06570 0.41 -0.2
1,436,119 - RR42_RS06570 0.41 -2.4
1,436,570 - +0.1
1,436,686 + +1.3
1,436,687 - -0.1
1,436,687 - -0.8
1,436,701 - +0.7
1,436,760 + +0.1
1,436,760 + +0.4
1,436,848 - -0.5
1,436,848 - -0.3
1,436,956 - RR42_RS06575 0.20 -0.4
1,436,956 - RR42_RS06575 0.20 -0.3
1,436,978 - RR42_RS06575 0.23 +0.1
1,436,978 - RR42_RS06575 0.23 -0.9
1,437,022 - RR42_RS06575 0.27 -0.4
1,437,036 + +0.0
1,437,037 - RR42_RS06575 0.29 +0.2
1,437,037 - RR42_RS06575 0.29 +0.0
1,437,037 - RR42_RS06575 0.29 +0.2
1,437,037 - RR42_RS06575 0.29 -1.7
1,437,037 - RR42_RS06575 0.29 -0.3
1,437,222 + RR42_RS06575 0.50 +1.4
1,437,222 + RR42_RS06575 0.50 +0.5
1,437,223 - RR42_RS06575 0.50 -1.5
1,437,223 - RR42_RS06575 0.50 -0.8
1,437,388 - RR42_RS06575 0.69 +1.3
1,437,499 + RR42_RS06575 0.81 -0.2
1,437,639 - -0.2
1,437,717 - -1.1
1,437,780 - RR42_RS06580 0.14 +0.4
1,437,803 + RR42_RS06580 0.21 -0.7
1,437,803 + RR42_RS06580 0.21 -0.6
1,437,804 - RR42_RS06580 0.21 -1.4
1,437,804 - RR42_RS06580 0.21 +0.0
1,438,006 + RR42_RS06580 0.77 -0.5
1,438,053 - RR42_RS06580 0.90 -1.6
1,438,411 + RR42_RS06585 0.14 +0.8
1,438,411 + RR42_RS06585 0.14 -0.5
1,438,637 + RR42_RS06585 0.24 -0.3
1,438,637 + RR42_RS06585 0.24 -0.7

Or see this region's nucleotide sequence