Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06030

Experiment: R2A with Nickel (II) chloride 0.35 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS06025 and RR42_RS06030 are separated by 62 nucleotidesRR42_RS06030 and RR42_RS06035 are separated by 31 nucleotidesRR42_RS06035 and RR42_RS06040 are separated by 28 nucleotidesRR42_RS06040 and RR42_RS06045 are separated by 112 nucleotides RR42_RS06025: RR42_RS06025 - cysteine desulfurase, at 1,324,578 to 1,325,795 _RS06025 RR42_RS06030: RR42_RS06030 - Fe-S cluster assembly scaffold IscU, at 1,325,858 to 1,326,259 _RS06030 RR42_RS06035: RR42_RS06035 - heme biosynthesis protein HemY, at 1,326,291 to 1,326,611 _RS06035 RR42_RS06040: RR42_RS06040 - GNAT family acetyltransferase, at 1,326,640 to 1,326,873 _RS06040 RR42_RS06045: RR42_RS06045 - co-chaperone HscB, at 1,326,986 to 1,327,504 _RS06045 Position (kb) 1325 1326 1327Strain fitness (log2 ratio) -2 -1 0 1 2at 1325.828 kb on + strandat 1325.828 kb on + strandat 1325.832 kb on + strandat 1326.627 kb on + strandat 1326.720 kb on + strand, within RR42_RS06040at 1326.720 kb on + strand, within RR42_RS06040

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.35 mM
remove
1,325,828 + -0.2
1,325,828 + -1.0
1,325,832 + -0.7
1,326,627 + -0.1
1,326,720 + RR42_RS06040 0.34 -1.8
1,326,720 + RR42_RS06040 0.34 +1.8

Or see this region's nucleotide sequence