Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05790

Experiment: R2A with Nickel (II) chloride 0.35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05785 and RR42_RS05790 are separated by 82 nucleotidesRR42_RS05790 and RR42_RS05795 are separated by 370 nucleotides RR42_RS05785: RR42_RS05785 - hypothetical protein, at 1,272,242 to 1,273,384 _RS05785 RR42_RS05790: RR42_RS05790 - lipoprotein, at 1,273,467 to 1,274,243 _RS05790 RR42_RS05795: RR42_RS05795 - N-formylglutamate amidohydrolase, at 1,274,614 to 1,275,486 _RS05795 Position (kb) 1273 1274 1275Strain fitness (log2 ratio) -3 -2 -1 0 1at 1272.479 kb on + strand, within RR42_RS05785at 1272.479 kb on + strand, within RR42_RS05785at 1272.479 kb on + strand, within RR42_RS05785at 1272.479 kb on + strand, within RR42_RS05785at 1272.480 kb on - strand, within RR42_RS05785at 1272.480 kb on - strand, within RR42_RS05785at 1272.480 kb on - strand, within RR42_RS05785at 1272.480 kb on - strand, within RR42_RS05785at 1272.480 kb on - strand, within RR42_RS05785at 1272.575 kb on + strand, within RR42_RS05785at 1272.576 kb on - strand, within RR42_RS05785at 1272.868 kb on + strand, within RR42_RS05785at 1272.986 kb on + strand, within RR42_RS05785at 1272.986 kb on + strand, within RR42_RS05785at 1272.986 kb on + strand, within RR42_RS05785at 1272.986 kb on + strand, within RR42_RS05785at 1272.987 kb on - strand, within RR42_RS05785at 1272.987 kb on - strand, within RR42_RS05785at 1272.987 kb on - strand, within RR42_RS05785at 1272.987 kb on - strand, within RR42_RS05785at 1272.989 kb on + strand, within RR42_RS05785at 1272.989 kb on + strand, within RR42_RS05785at 1272.989 kb on + strand, within RR42_RS05785at 1272.989 kb on + strand, within RR42_RS05785at 1272.989 kb on + strand, within RR42_RS05785at 1272.989 kb on + strand, within RR42_RS05785at 1273.061 kb on + strand, within RR42_RS05785at 1273.063 kb on + strand, within RR42_RS05785at 1273.064 kb on - strand, within RR42_RS05785at 1273.182 kb on - strand, within RR42_RS05785at 1273.196 kb on + strand, within RR42_RS05785at 1273.196 kb on + strand, within RR42_RS05785at 1273.196 kb on + strand, within RR42_RS05785at 1273.196 kb on + strand, within RR42_RS05785at 1273.197 kb on - strand, within RR42_RS05785at 1273.197 kb on - strand, within RR42_RS05785at 1273.197 kb on - strand, within RR42_RS05785at 1273.229 kb on + strand, within RR42_RS05785at 1273.230 kb on - strand, within RR42_RS05785at 1273.230 kb on - strand, within RR42_RS05785at 1273.230 kb on - strand, within RR42_RS05785at 1273.729 kb on + strand, within RR42_RS05790at 1273.730 kb on - strand, within RR42_RS05790at 1273.753 kb on + strand, within RR42_RS05790at 1273.936 kb on + strand, within RR42_RS05790at 1273.937 kb on - strand, within RR42_RS05790at 1273.937 kb on - strand, within RR42_RS05790at 1273.937 kb on - strand, within RR42_RS05790at 1274.324 kb on - strandat 1274.350 kb on + strandat 1274.351 kb on - strandat 1274.391 kb on + strandat 1274.400 kb on + strandat 1274.401 kb on - strandat 1274.514 kb on + strandat 1274.514 kb on + strandat 1274.515 kb on - strandat 1274.515 kb on - strandat 1274.515 kb on - strandat 1274.515 kb on - strandat 1274.515 kb on - strandat 1274.718 kb on - strand, within RR42_RS05795at 1274.718 kb on - strand, within RR42_RS05795at 1274.801 kb on + strand, within RR42_RS05795at 1274.801 kb on + strand, within RR42_RS05795at 1274.802 kb on - strand, within RR42_RS05795at 1274.942 kb on + strand, within RR42_RS05795at 1274.942 kb on + strand, within RR42_RS05795at 1274.943 kb on - strand, within RR42_RS05795at 1274.943 kb on - strand, within RR42_RS05795at 1275.038 kb on + strand, within RR42_RS05795at 1275.038 kb on + strand, within RR42_RS05795at 1275.039 kb on - strand, within RR42_RS05795at 1275.050 kb on + strand, within RR42_RS05795at 1275.053 kb on + strand, within RR42_RS05795at 1275.060 kb on + strand, within RR42_RS05795at 1275.061 kb on - strand, within RR42_RS05795at 1275.101 kb on + strand, within RR42_RS05795at 1275.101 kb on + strand, within RR42_RS05795at 1275.243 kb on - strand, within RR42_RS05795at 1275.243 kb on - strand, within RR42_RS05795

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.35 mM
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1,272,479 + RR42_RS05785 0.21 -1.8
1,272,479 + RR42_RS05785 0.21 +0.4
1,272,479 + RR42_RS05785 0.21 -0.7
1,272,479 + RR42_RS05785 0.21 +0.1
1,272,480 - RR42_RS05785 0.21 +0.3
1,272,480 - RR42_RS05785 0.21 +0.2
1,272,480 - RR42_RS05785 0.21 +0.2
1,272,480 - RR42_RS05785 0.21 +0.1
1,272,480 - RR42_RS05785 0.21 -0.2
1,272,575 + RR42_RS05785 0.29 -0.0
1,272,576 - RR42_RS05785 0.29 +0.6
1,272,868 + RR42_RS05785 0.55 -1.2
1,272,986 + RR42_RS05785 0.65 +0.4
1,272,986 + RR42_RS05785 0.65 +1.2
1,272,986 + RR42_RS05785 0.65 -0.1
1,272,986 + RR42_RS05785 0.65 -0.7
1,272,987 - RR42_RS05785 0.65 -2.0
1,272,987 - RR42_RS05785 0.65 +0.8
1,272,987 - RR42_RS05785 0.65 -3.2
1,272,987 - RR42_RS05785 0.65 -1.4
1,272,989 + RR42_RS05785 0.65 +0.1
1,272,989 + RR42_RS05785 0.65 -0.2
1,272,989 + RR42_RS05785 0.65 -1.6
1,272,989 + RR42_RS05785 0.65 -0.3
1,272,989 + RR42_RS05785 0.65 -0.1
1,272,989 + RR42_RS05785 0.65 -0.2
1,273,061 + RR42_RS05785 0.72 -0.2
1,273,063 + RR42_RS05785 0.72 +1.2
1,273,064 - RR42_RS05785 0.72 -1.0
1,273,182 - RR42_RS05785 0.82 -0.5
1,273,196 + RR42_RS05785 0.83 +1.0
1,273,196 + RR42_RS05785 0.83 -0.9
1,273,196 + RR42_RS05785 0.83 +0.5
1,273,196 + RR42_RS05785 0.83 +0.6
1,273,197 - RR42_RS05785 0.84 +0.4
1,273,197 - RR42_RS05785 0.84 -1.1
1,273,197 - RR42_RS05785 0.84 -0.2
1,273,229 + RR42_RS05785 0.86 +0.0
1,273,230 - RR42_RS05785 0.86 -0.7
1,273,230 - RR42_RS05785 0.86 -0.1
1,273,230 - RR42_RS05785 0.86 -0.8
1,273,729 + RR42_RS05790 0.34 -0.6
1,273,730 - RR42_RS05790 0.34 -1.8
1,273,753 + RR42_RS05790 0.37 -0.4
1,273,936 + RR42_RS05790 0.60 +0.3
1,273,937 - RR42_RS05790 0.60 -0.2
1,273,937 - RR42_RS05790 0.60 -0.8
1,273,937 - RR42_RS05790 0.60 -0.4
1,274,324 - +0.9
1,274,350 + -0.4
1,274,351 - +0.8
1,274,391 + -0.2
1,274,400 + +0.0
1,274,401 - +0.0
1,274,514 + -0.7
1,274,514 + +0.7
1,274,515 - +0.1
1,274,515 - +0.1
1,274,515 - +0.5
1,274,515 - +0.5
1,274,515 - +0.0
1,274,718 - RR42_RS05795 0.12 +1.4
1,274,718 - RR42_RS05795 0.12 +0.5
1,274,801 + RR42_RS05795 0.21 +0.5
1,274,801 + RR42_RS05795 0.21 -0.2
1,274,802 - RR42_RS05795 0.22 -0.1
1,274,942 + RR42_RS05795 0.38 +0.4
1,274,942 + RR42_RS05795 0.38 +0.1
1,274,943 - RR42_RS05795 0.38 -0.5
1,274,943 - RR42_RS05795 0.38 +0.8
1,275,038 + RR42_RS05795 0.49 +0.7
1,275,038 + RR42_RS05795 0.49 -0.1
1,275,039 - RR42_RS05795 0.49 +0.4
1,275,050 + RR42_RS05795 0.50 +1.1
1,275,053 + RR42_RS05795 0.50 +1.3
1,275,060 + RR42_RS05795 0.51 +0.1
1,275,061 - RR42_RS05795 0.51 +0.5
1,275,101 + RR42_RS05795 0.56 +1.0
1,275,101 + RR42_RS05795 0.56 -0.0
1,275,243 - RR42_RS05795 0.72 -0.2
1,275,243 - RR42_RS05795 0.72 +0.3

Or see this region's nucleotide sequence