Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05640

Experiment: R2A with Nickel (II) chloride 0.35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05635 and RR42_RS05640 overlap by 1 nucleotidesRR42_RS05640 and RR42_RS05645 overlap by 4 nucleotidesRR42_RS05645 and RR42_RS05650 are separated by 33 nucleotides RR42_RS05635: RR42_RS05635 - urea ABC transporter permease, at 1,241,036 to 1,242,628 _RS05635 RR42_RS05640: RR42_RS05640 - amino acid ABC transporter permease, at 1,242,628 to 1,243,833 _RS05640 RR42_RS05645: RR42_RS05645 - urea ABC transporter ATP-binding protein, at 1,243,830 to 1,244,678 _RS05645 RR42_RS05650: RR42_RS05650 - urea ABC transporter ATP-binding protein, at 1,244,712 to 1,245,404 _RS05650 Position (kb) 1242 1243 1244Strain fitness (log2 ratio) -2 -1 0 1at 1241.808 kb on - strand, within RR42_RS05635at 1241.873 kb on + strand, within RR42_RS05635at 1241.873 kb on + strand, within RR42_RS05635at 1241.873 kb on + strand, within RR42_RS05635at 1241.873 kb on + strand, within RR42_RS05635at 1241.874 kb on - strand, within RR42_RS05635at 1241.874 kb on - strand, within RR42_RS05635at 1241.874 kb on - strand, within RR42_RS05635at 1241.874 kb on - strand, within RR42_RS05635at 1241.925 kb on - strand, within RR42_RS05635at 1242.164 kb on + strand, within RR42_RS05635at 1242.320 kb on + strand, within RR42_RS05635at 1242.320 kb on + strand, within RR42_RS05635at 1242.321 kb on - strand, within RR42_RS05635at 1242.321 kb on - strand, within RR42_RS05635at 1242.410 kb on + strand, within RR42_RS05635at 1242.411 kb on - strand, within RR42_RS05635at 1242.522 kb on - strandat 1242.880 kb on + strand, within RR42_RS05640at 1242.931 kb on + strand, within RR42_RS05640at 1242.946 kb on + strand, within RR42_RS05640at 1242.946 kb on + strand, within RR42_RS05640at 1242.947 kb on - strand, within RR42_RS05640at 1242.947 kb on - strand, within RR42_RS05640at 1242.979 kb on + strand, within RR42_RS05640at 1242.980 kb on - strand, within RR42_RS05640at 1243.150 kb on + strand, within RR42_RS05640at 1243.150 kb on + strand, within RR42_RS05640at 1243.151 kb on - strand, within RR42_RS05640at 1243.180 kb on + strand, within RR42_RS05640at 1243.181 kb on - strand, within RR42_RS05640at 1243.181 kb on - strand, within RR42_RS05640at 1243.348 kb on + strand, within RR42_RS05640at 1243.423 kb on + strand, within RR42_RS05640at 1243.423 kb on + strand, within RR42_RS05640at 1243.423 kb on + strand, within RR42_RS05640at 1243.562 kb on + strand, within RR42_RS05640at 1243.651 kb on + strand, within RR42_RS05640at 1243.652 kb on - strand, within RR42_RS05640at 1243.708 kb on + strand, within RR42_RS05640at 1243.708 kb on + strand, within RR42_RS05640at 1243.988 kb on + strand, within RR42_RS05645at 1243.988 kb on + strand, within RR42_RS05645at 1243.989 kb on - strand, within RR42_RS05645at 1243.989 kb on - strand, within RR42_RS05645at 1244.353 kb on - strand, within RR42_RS05645at 1244.664 kb on + strandat 1244.711 kb on + strandat 1244.712 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.35 mM
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1,241,808 - RR42_RS05635 0.48 +0.0
1,241,873 + RR42_RS05635 0.53 -0.3
1,241,873 + RR42_RS05635 0.53 -1.2
1,241,873 + RR42_RS05635 0.53 -0.5
1,241,873 + RR42_RS05635 0.53 +0.1
1,241,874 - RR42_RS05635 0.53 +0.3
1,241,874 - RR42_RS05635 0.53 -0.7
1,241,874 - RR42_RS05635 0.53 +0.2
1,241,874 - RR42_RS05635 0.53 +0.3
1,241,925 - RR42_RS05635 0.56 -0.5
1,242,164 + RR42_RS05635 0.71 +0.7
1,242,320 + RR42_RS05635 0.81 +1.4
1,242,320 + RR42_RS05635 0.81 +0.2
1,242,321 - RR42_RS05635 0.81 -0.3
1,242,321 - RR42_RS05635 0.81 -0.1
1,242,410 + RR42_RS05635 0.86 +0.4
1,242,411 - RR42_RS05635 0.86 +0.2
1,242,522 - +0.4
1,242,880 + RR42_RS05640 0.21 -0.2
1,242,931 + RR42_RS05640 0.25 -0.2
1,242,946 + RR42_RS05640 0.26 -2.2
1,242,946 + RR42_RS05640 0.26 -0.7
1,242,947 - RR42_RS05640 0.26 +0.2
1,242,947 - RR42_RS05640 0.26 -0.2
1,242,979 + RR42_RS05640 0.29 -0.6
1,242,980 - RR42_RS05640 0.29 -0.2
1,243,150 + RR42_RS05640 0.43 -0.5
1,243,150 + RR42_RS05640 0.43 -0.0
1,243,151 - RR42_RS05640 0.43 -0.1
1,243,180 + RR42_RS05640 0.46 +0.2
1,243,181 - RR42_RS05640 0.46 +0.1
1,243,181 - RR42_RS05640 0.46 -1.6
1,243,348 + RR42_RS05640 0.60 -0.5
1,243,423 + RR42_RS05640 0.66 -2.0
1,243,423 + RR42_RS05640 0.66 -0.1
1,243,423 + RR42_RS05640 0.66 -0.3
1,243,562 + RR42_RS05640 0.77 +0.1
1,243,651 + RR42_RS05640 0.85 +0.7
1,243,652 - RR42_RS05640 0.85 -0.8
1,243,708 + RR42_RS05640 0.90 -0.6
1,243,708 + RR42_RS05640 0.90 -1.0
1,243,988 + RR42_RS05645 0.19 +0.4
1,243,988 + RR42_RS05645 0.19 +0.5
1,243,989 - RR42_RS05645 0.19 +0.5
1,243,989 - RR42_RS05645 0.19 +0.3
1,244,353 - RR42_RS05645 0.62 -0.2
1,244,664 + +0.7
1,244,711 + +0.6
1,244,712 - -1.5

Or see this region's nucleotide sequence