Experiment: R2A with Nickel (II) chloride 0.35 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03755 and RR42_RS03760 are separated by 88 nucleotides RR42_RS03760 and RR42_RS03765 are separated by 2 nucleotides RR42_RS03765 and RR42_RS03770 overlap by 4 nucleotides
RR42_RS03755: RR42_RS03755 - formate dehydrogenase, at 827,821 to 829,374
_RS03755
RR42_RS03760: RR42_RS03760 - formate dehydrogenase, at 829,463 to 832,318
_RS03760
RR42_RS03765: RR42_RS03765 - formate dehydrogenase, at 832,321 to 833,160
_RS03765
RR42_RS03770: RR42_RS03770 - formate dehydrogenase, at 833,157 to 833,381
_RS03770
Position (kb) 829
830
831
832
833 Strain fitness (log2 ratio) -1
0
1
2 at 828.475 kb on + strand, within RR42_RS03755 at 828.475 kb on + strand, within RR42_RS03755 at 828.476 kb on - strand, within RR42_RS03755 at 828.476 kb on - strand, within RR42_RS03755 at 828.477 kb on + strand, within RR42_RS03755 at 828.477 kb on + strand, within RR42_RS03755 at 828.477 kb on + strand, within RR42_RS03755 at 828.477 kb on + strand, within RR42_RS03755 at 828.477 kb on + strand, within RR42_RS03755 at 828.478 kb on - strand, within RR42_RS03755 at 828.481 kb on + strand, within RR42_RS03755 at 828.481 kb on + strand, within RR42_RS03755 at 828.481 kb on + strand, within RR42_RS03755 at 828.497 kb on - strand, within RR42_RS03755 at 828.622 kb on + strand, within RR42_RS03755 at 828.622 kb on + strand, within RR42_RS03755 at 828.797 kb on - strand, within RR42_RS03755 at 828.797 kb on - strand, within RR42_RS03755 at 829.433 kb on - strand at 829.784 kb on + strand, within RR42_RS03760 at 829.784 kb on + strand, within RR42_RS03760 at 829.785 kb on - strand, within RR42_RS03760 at 829.785 kb on - strand, within RR42_RS03760 at 829.785 kb on - strand, within RR42_RS03760 at 829.786 kb on + strand, within RR42_RS03760 at 829.787 kb on - strand, within RR42_RS03760 at 829.787 kb on - strand, within RR42_RS03760 at 829.883 kb on + strand, within RR42_RS03760 at 829.938 kb on - strand, within RR42_RS03760 at 829.946 kb on + strand, within RR42_RS03760 at 829.946 kb on + strand, within RR42_RS03760 at 829.946 kb on + strand, within RR42_RS03760 at 829.947 kb on - strand, within RR42_RS03760 at 830.265 kb on - strand, within RR42_RS03760 at 830.324 kb on + strand, within RR42_RS03760 at 830.511 kb on - strand, within RR42_RS03760 at 830.561 kb on - strand, within RR42_RS03760 at 831.036 kb on - strand, within RR42_RS03760 at 831.062 kb on + strand, within RR42_RS03760 at 831.063 kb on - strand, within RR42_RS03760 at 831.335 kb on - strand, within RR42_RS03760 at 831.374 kb on + strand, within RR42_RS03760 at 831.374 kb on + strand, within RR42_RS03760 at 831.491 kb on + strand, within RR42_RS03760 at 831.501 kb on + strand, within RR42_RS03760 at 831.501 kb on + strand, within RR42_RS03760 at 831.659 kb on + strand, within RR42_RS03760 at 831.848 kb on + strand, within RR42_RS03760 at 831.920 kb on + strand, within RR42_RS03760 at 831.920 kb on + strand, within RR42_RS03760 at 832.110 kb on - strand at 832.190 kb on + strand at 832.190 kb on + strand at 832.191 kb on - strand at 832.191 kb on - strand at 832.450 kb on + strand, within RR42_RS03765 at 832.450 kb on + strand, within RR42_RS03765 at 832.559 kb on - strand, within RR42_RS03765 at 832.762 kb on + strand, within RR42_RS03765 at 832.975 kb on + strand, within RR42_RS03765 at 833.051 kb on + strand, within RR42_RS03765 at 833.116 kb on + strand at 833.116 kb on + strand at 833.256 kb on - strand, within RR42_RS03770
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.35 mM remove 828,475 + RR42_RS03755 0.42 +0.2 828,475 + RR42_RS03755 0.42 +0.6 828,476 - RR42_RS03755 0.42 +0.9 828,476 - RR42_RS03755 0.42 +0.1 828,477 + RR42_RS03755 0.42 -0.3 828,477 + RR42_RS03755 0.42 +0.5 828,477 + RR42_RS03755 0.42 +0.1 828,477 + RR42_RS03755 0.42 +0.9 828,477 + RR42_RS03755 0.42 +0.5 828,478 - RR42_RS03755 0.42 -1.6 828,481 + RR42_RS03755 0.42 -1.0 828,481 + RR42_RS03755 0.42 -0.9 828,481 + RR42_RS03755 0.42 +0.5 828,497 - RR42_RS03755 0.44 +0.4 828,622 + RR42_RS03755 0.52 -0.6 828,622 + RR42_RS03755 0.52 +1.7 828,797 - RR42_RS03755 0.63 -0.3 828,797 - RR42_RS03755 0.63 +0.3 829,433 - +1.9 829,784 + RR42_RS03760 0.11 -1.2 829,784 + RR42_RS03760 0.11 +0.2 829,785 - RR42_RS03760 0.11 -0.8 829,785 - RR42_RS03760 0.11 +0.0 829,785 - RR42_RS03760 0.11 +1.1 829,786 + RR42_RS03760 0.11 -1.1 829,787 - RR42_RS03760 0.11 +1.0 829,787 - RR42_RS03760 0.11 -0.1 829,883 + RR42_RS03760 0.15 +0.6 829,938 - RR42_RS03760 0.17 +0.3 829,946 + RR42_RS03760 0.17 +1.2 829,946 + RR42_RS03760 0.17 +0.9 829,946 + RR42_RS03760 0.17 -0.1 829,947 - RR42_RS03760 0.17 -0.5 830,265 - RR42_RS03760 0.28 -0.1 830,324 + RR42_RS03760 0.30 -0.1 830,511 - RR42_RS03760 0.37 +0.4 830,561 - RR42_RS03760 0.38 -0.3 831,036 - RR42_RS03760 0.55 +0.1 831,062 + RR42_RS03760 0.56 -1.3 831,063 - RR42_RS03760 0.56 -1.2 831,335 - RR42_RS03760 0.66 -0.8 831,374 + RR42_RS03760 0.67 +0.4 831,374 + RR42_RS03760 0.67 +0.2 831,491 + RR42_RS03760 0.71 -0.4 831,501 + RR42_RS03760 0.71 -0.5 831,501 + RR42_RS03760 0.71 -0.2 831,659 + RR42_RS03760 0.77 -0.6 831,848 + RR42_RS03760 0.84 -1.2 831,920 + RR42_RS03760 0.86 -0.7 831,920 + RR42_RS03760 0.86 -0.9 832,110 - +0.2 832,190 + -0.1 832,190 + -0.1 832,191 - +0.6 832,191 - -1.1 832,450 + RR42_RS03765 0.15 +0.1 832,450 + RR42_RS03765 0.15 +1.2 832,559 - RR42_RS03765 0.28 -0.6 832,762 + RR42_RS03765 0.53 +0.2 832,975 + RR42_RS03765 0.78 -1.0 833,051 + RR42_RS03765 0.87 -0.5 833,116 + +0.1 833,116 + -0.3 833,256 - RR42_RS03770 0.44 +0.4
Or see this region's nucleotide sequence