Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02870

Experiment: R2A with Nickel (II) chloride 0.35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02865 and RR42_RS02870 are separated by 307 nucleotidesRR42_RS02870 and RR42_RS02875 are separated by 33 nucleotides RR42_RS02865: RR42_RS02865 - chloride channel protein, at 638,142 to 639,830 _RS02865 RR42_RS02870: RR42_RS02870 - RNA helicase, at 640,138 to 641,826 _RS02870 RR42_RS02875: RR42_RS02875 - serine/threonine protein kinase, at 641,860 to 642,921 _RS02875 Position (kb) 640 641 642Strain fitness (log2 ratio) -2 -1 0 1 2at 639.195 kb on + strand, within RR42_RS02865at 639.196 kb on - strand, within RR42_RS02865at 639.196 kb on - strand, within RR42_RS02865at 639.196 kb on - strand, within RR42_RS02865at 639.196 kb on - strand, within RR42_RS02865at 639.196 kb on - strand, within RR42_RS02865at 639.557 kb on + strand, within RR42_RS02865at 639.557 kb on + strand, within RR42_RS02865at 639.558 kb on - strand, within RR42_RS02865at 639.558 kb on - strand, within RR42_RS02865at 639.559 kb on + strand, within RR42_RS02865at 639.559 kb on + strand, within RR42_RS02865at 639.560 kb on - strand, within RR42_RS02865at 639.678 kb on + strandat 639.689 kb on + strandat 639.789 kb on - strandat 639.996 kb on - strandat 640.000 kb on + strandat 640.001 kb on - strandat 640.173 kb on + strandat 640.173 kb on + strandat 640.174 kb on - strandat 640.174 kb on - strandat 640.200 kb on + strandat 640.200 kb on + strandat 640.200 kb on + strandat 640.200 kb on + strandat 640.201 kb on - strandat 640.201 kb on - strandat 640.201 kb on - strandat 640.201 kb on - strandat 640.201 kb on - strandat 640.437 kb on + strand, within RR42_RS02870at 640.441 kb on + strand, within RR42_RS02870at 640.441 kb on + strand, within RR42_RS02870at 640.442 kb on - strand, within RR42_RS02870at 640.792 kb on - strand, within RR42_RS02870at 640.823 kb on - strand, within RR42_RS02870at 641.107 kb on + strand, within RR42_RS02870at 641.107 kb on + strand, within RR42_RS02870at 641.108 kb on - strand, within RR42_RS02870at 641.108 kb on - strand, within RR42_RS02870at 641.108 kb on - strand, within RR42_RS02870at 641.134 kb on + strand, within RR42_RS02870at 641.134 kb on + strand, within RR42_RS02870at 641.135 kb on - strand, within RR42_RS02870at 641.135 kb on - strand, within RR42_RS02870at 641.824 kb on + strandat 641.858 kb on + strandat 641.858 kb on + strandat 641.858 kb on + strandat 641.859 kb on - strandat 641.932 kb on + strandat 642.015 kb on + strand, within RR42_RS02875at 642.015 kb on + strand, within RR42_RS02875at 642.015 kb on + strand, within RR42_RS02875at 642.015 kb on + strand, within RR42_RS02875at 642.015 kb on + strand, within RR42_RS02875at 642.015 kb on + strand, within RR42_RS02875at 642.015 kb on + strand, within RR42_RS02875at 642.016 kb on - strand, within RR42_RS02875at 642.016 kb on - strand, within RR42_RS02875at 642.016 kb on - strand, within RR42_RS02875at 642.019 kb on + strand, within RR42_RS02875at 642.019 kb on + strand, within RR42_RS02875at 642.019 kb on + strand, within RR42_RS02875at 642.019 kb on + strand, within RR42_RS02875at 642.019 kb on + strand, within RR42_RS02875at 642.019 kb on + strand, within RR42_RS02875at 642.020 kb on - strand, within RR42_RS02875at 642.020 kb on - strand, within RR42_RS02875at 642.079 kb on + strand, within RR42_RS02875at 642.271 kb on - strand, within RR42_RS02875at 642.331 kb on + strand, within RR42_RS02875at 642.405 kb on + strand, within RR42_RS02875at 642.405 kb on + strand, within RR42_RS02875at 642.406 kb on - strand, within RR42_RS02875at 642.406 kb on - strand, within RR42_RS02875at 642.406 kb on - strand, within RR42_RS02875at 642.406 kb on - strand, within RR42_RS02875at 642.406 kb on - strand, within RR42_RS02875at 642.604 kb on - strand, within RR42_RS02875at 642.697 kb on + strand, within RR42_RS02875at 642.698 kb on - strand, within RR42_RS02875

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.35 mM
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639,195 + RR42_RS02865 0.62 -0.9
639,196 - RR42_RS02865 0.62 +0.1
639,196 - RR42_RS02865 0.62 -0.7
639,196 - RR42_RS02865 0.62 +1.3
639,196 - RR42_RS02865 0.62 -0.0
639,196 - RR42_RS02865 0.62 +0.6
639,557 + RR42_RS02865 0.84 -0.1
639,557 + RR42_RS02865 0.84 -1.2
639,558 - RR42_RS02865 0.84 -0.3
639,558 - RR42_RS02865 0.84 +0.4
639,559 + RR42_RS02865 0.84 +0.4
639,559 + RR42_RS02865 0.84 +1.3
639,560 - RR42_RS02865 0.84 +0.8
639,678 + +0.7
639,689 + +1.4
639,789 - +2.6
639,996 - +0.8
640,000 + +1.2
640,001 - +0.4
640,173 + +0.6
640,173 + -1.5
640,174 - +1.8
640,174 - -1.2
640,200 + -0.8
640,200 + +0.4
640,200 + -0.4
640,200 + +1.4
640,201 - -0.5
640,201 - -0.9
640,201 - -0.3
640,201 - +0.0
640,201 - -1.2
640,437 + RR42_RS02870 0.18 +1.4
640,441 + RR42_RS02870 0.18 +0.4
640,441 + RR42_RS02870 0.18 +0.5
640,442 - RR42_RS02870 0.18 +0.5
640,792 - RR42_RS02870 0.39 +0.2
640,823 - RR42_RS02870 0.41 -0.8
641,107 + RR42_RS02870 0.57 -2.6
641,107 + RR42_RS02870 0.57 -0.5
641,108 - RR42_RS02870 0.57 +0.0
641,108 - RR42_RS02870 0.57 +1.3
641,108 - RR42_RS02870 0.57 +1.0
641,134 + RR42_RS02870 0.59 -1.0
641,134 + RR42_RS02870 0.59 -0.1
641,135 - RR42_RS02870 0.59 +0.4
641,135 - RR42_RS02870 0.59 -0.7
641,824 + -0.1
641,858 + +0.9
641,858 + -1.1
641,858 + +2.2
641,859 - +0.3
641,932 + +0.4
642,015 + RR42_RS02875 0.15 -0.7
642,015 + RR42_RS02875 0.15 +0.1
642,015 + RR42_RS02875 0.15 +0.3
642,015 + RR42_RS02875 0.15 +0.5
642,015 + RR42_RS02875 0.15 +0.2
642,015 + RR42_RS02875 0.15 +0.5
642,015 + RR42_RS02875 0.15 +0.8
642,016 - RR42_RS02875 0.15 +0.2
642,016 - RR42_RS02875 0.15 -0.6
642,016 - RR42_RS02875 0.15 +1.3
642,019 + RR42_RS02875 0.15 +0.3
642,019 + RR42_RS02875 0.15 -1.9
642,019 + RR42_RS02875 0.15 +0.7
642,019 + RR42_RS02875 0.15 +1.5
642,019 + RR42_RS02875 0.15 -0.1
642,019 + RR42_RS02875 0.15 +2.2
642,020 - RR42_RS02875 0.15 -1.3
642,020 - RR42_RS02875 0.15 +1.6
642,079 + RR42_RS02875 0.21 +0.4
642,271 - RR42_RS02875 0.39 +1.3
642,331 + RR42_RS02875 0.44 -0.6
642,405 + RR42_RS02875 0.51 +0.7
642,405 + RR42_RS02875 0.51 +0.1
642,406 - RR42_RS02875 0.51 +0.1
642,406 - RR42_RS02875 0.51 +1.0
642,406 - RR42_RS02875 0.51 -1.6
642,406 - RR42_RS02875 0.51 +0.2
642,406 - RR42_RS02875 0.51 +0.1
642,604 - RR42_RS02875 0.70 +0.3
642,697 + RR42_RS02875 0.79 +0.6
642,698 - RR42_RS02875 0.79 +0.8

Or see this region's nucleotide sequence