Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00595

Experiment: R2A with Nickel (II) chloride 0.35 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS00590 and RR42_RS00595 overlap by 4 nucleotidesRR42_RS00595 and RR42_RS00600 overlap by 4 nucleotides RR42_RS00590: RR42_RS00590 - glutamyl-tRNA amidotransferase, at 155,908 to 157,413 _RS00590 RR42_RS00595: RR42_RS00595 - lipoprotein, at 157,410 to 157,877 _RS00595 RR42_RS00600: RR42_RS00600 - DeoR family transcriptional regulator, at 157,874 to 158,845 _RS00600 Position (kb) 157 158Strain fitness (log2 ratio) -1 0 1at 157.703 kb on + strand, within RR42_RS00595at 157.703 kb on + strand, within RR42_RS00595at 157.815 kb on + strand, within RR42_RS00595at 157.815 kb on + strand, within RR42_RS00595at 157.815 kb on + strand, within RR42_RS00595at 158.678 kb on + strand, within RR42_RS00600at 158.855 kb on + strandat 158.861 kb on + strandat 158.861 kb on + strandat 158.861 kb on + strandat 158.865 kb on + strandat 158.865 kb on + strandat 158.865 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.35 mM
remove
157,703 + RR42_RS00595 0.63 +0.6
157,703 + RR42_RS00595 0.63 +0.5
157,815 + RR42_RS00595 0.87 +0.3
157,815 + RR42_RS00595 0.87 +0.2
157,815 + RR42_RS00595 0.87 -0.4
158,678 + RR42_RS00600 0.83 +1.2
158,855 + -0.6
158,861 + -0.2
158,861 + +0.6
158,861 + -0.1
158,865 + +0.3
158,865 + +1.2
158,865 + +0.3

Or see this region's nucleotide sequence