Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4931

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4930 and Pf1N1B4_4931 are separated by 252 nucleotidesPf1N1B4_4931 and Pf1N1B4_4932 are separated by 40 nucleotides Pf1N1B4_4930 - Acetylornithine deacetylase (EC 3.5.1.16), at 5,463,792 to 5,464,949 _4930 Pf1N1B4_4931 - Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79), at 5,465,202 to 5,466,659 _4931 Pf1N1B4_4932 - Tartrate dehydrogenase (EC 1.1.1.93) / Tartrate decarboxylase (EC 4.1.1.73) / D-malic enzyme (EC 1.1.1.83), at 5,466,700 to 5,467,779 _4932 Position (kb) 5465 5466 5467Strain fitness (log2 ratio) -2 -1 0 1at 5464.327 kb on - strand, within Pf1N1B4_4930at 5464.831 kb on + strandat 5464.831 kb on + strand, within Pf1N1B4_4930at 5464.831 kb on + strand, within Pf1N1B4_4930at 5464.832 kb on - strand, within Pf1N1B4_4930at 5465.170 kb on - strandat 5465.250 kb on + strandat 5465.251 kb on - strandat 5465.251 kb on - strandat 5465.251 kb on - strandat 5466.114 kb on + strand, within Pf1N1B4_4931at 5466.115 kb on - strand, within Pf1N1B4_4931at 5466.457 kb on - strandat 5466.460 kb on - strand, within Pf1N1B4_4931at 5466.460 kb on - strand, within Pf1N1B4_4931at 5466.606 kb on + strandat 5466.622 kb on - strandat 5466.646 kb on + strandat 5466.647 kb on - strandat 5466.647 kb on - strandat 5466.824 kb on + strand, within Pf1N1B4_4932at 5466.847 kb on + strandat 5467.006 kb on + strand, within Pf1N1B4_4932at 5467.117 kb on + strand, within Pf1N1B4_4932at 5467.567 kb on + strand, within Pf1N1B4_4932at 5467.567 kb on + strand, within Pf1N1B4_4932at 5467.568 kb on - strand, within Pf1N1B4_4932

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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5,464,327 - Pf1N1B4_4930 0.46 -0.6
5,464,831 + -0.0
5,464,831 + Pf1N1B4_4930 0.90 +0.2
5,464,831 + Pf1N1B4_4930 0.90 +0.7
5,464,832 - Pf1N1B4_4930 0.90 +0.7
5,465,170 - -2.2
5,465,250 + +0.4
5,465,251 - +0.4
5,465,251 - -0.6
5,465,251 - -0.1
5,466,114 + Pf1N1B4_4931 0.63 +0.0
5,466,115 - Pf1N1B4_4931 0.63 -1.6
5,466,457 - +0.9
5,466,460 - Pf1N1B4_4931 0.86 -1.9
5,466,460 - Pf1N1B4_4931 0.86 -0.6
5,466,606 + +0.4
5,466,622 - -0.3
5,466,646 + +0.7
5,466,647 - -0.3
5,466,647 - -0.6
5,466,824 + Pf1N1B4_4932 0.11 +0.5
5,466,847 + -1.6
5,467,006 + Pf1N1B4_4932 0.28 +0.4
5,467,117 + Pf1N1B4_4932 0.39 -0.6
5,467,567 + Pf1N1B4_4932 0.80 +0.4
5,467,567 + Pf1N1B4_4932 0.80 +0.9
5,467,568 - Pf1N1B4_4932 0.80 +0.4

Or see this region's nucleotide sequence