Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_411

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_410 and Pf1N1B4_411 are separated by 66 nucleotidesPf1N1B4_411 and Pf1N1B4_412 are separated by 122 nucleotides Pf1N1B4_410 - ABC transporter for D-galactose/L-arabinose, ATPase component (from data), at 478,802 to 480,346 _410 Pf1N1B4_411 - ABC transporter for D-galactose/L-arabinose, substrate-binding component (from data), at 480,413 to 481,417 _411 Pf1N1B4_412 - L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data), at 481,540 to 482,358 _412 Position (kb) 480 481 482Strain fitness (log2 ratio) -2 -1 0 1 2at 479.577 kb on + strand, within Pf1N1B4_410at 479.578 kb on - strand, within Pf1N1B4_410at 479.578 kb on - strand, within Pf1N1B4_410at 479.578 kb on - strand, within Pf1N1B4_410at 479.578 kb on - strand, within Pf1N1B4_410at 479.578 kb on - strand, within Pf1N1B4_410at 479.578 kb on - strand, within Pf1N1B4_410at 479.578 kb on - strand, within Pf1N1B4_410at 479.616 kb on - strand, within Pf1N1B4_410at 479.616 kb on - strand, within Pf1N1B4_410at 479.693 kb on - strand, within Pf1N1B4_410at 479.730 kb on + strand, within Pf1N1B4_410at 479.730 kb on + strandat 479.731 kb on - strandat 479.731 kb on - strandat 479.938 kb on + strand, within Pf1N1B4_410at 480.154 kb on - strand, within Pf1N1B4_410at 480.332 kb on + strandat 480.332 kb on + strandat 480.333 kb on - strandat 480.346 kb on + strandat 480.347 kb on - strandat 480.347 kb on - strandat 480.347 kb on - strandat 480.473 kb on - strandat 480.493 kb on - strandat 480.493 kb on - strandat 480.493 kb on - strandat 480.493 kb on - strandat 480.493 kb on - strandat 480.528 kb on + strand, within Pf1N1B4_411at 480.528 kb on + strand, within Pf1N1B4_411at 480.528 kb on + strand, within Pf1N1B4_411at 480.528 kb on + strand, within Pf1N1B4_411at 480.529 kb on - strand, within Pf1N1B4_411at 480.529 kb on - strand, within Pf1N1B4_411at 480.529 kb on - strand, within Pf1N1B4_411at 480.529 kb on - strand, within Pf1N1B4_411at 480.529 kb on - strand, within Pf1N1B4_411at 480.529 kb on - strand, within Pf1N1B4_411at 480.529 kb on - strand, within Pf1N1B4_411at 480.529 kb on - strand, within Pf1N1B4_411at 480.529 kb on - strand, within Pf1N1B4_411at 480.549 kb on + strand, within Pf1N1B4_411at 480.549 kb on + strand, within Pf1N1B4_411at 480.886 kb on + strand, within Pf1N1B4_411at 480.906 kb on + strand, within Pf1N1B4_411at 480.907 kb on - strand, within Pf1N1B4_411at 480.907 kb on - strand, within Pf1N1B4_411at 480.924 kb on + strand, within Pf1N1B4_411at 480.924 kb on + strand, within Pf1N1B4_411at 480.925 kb on - strandat 480.925 kb on - strand, within Pf1N1B4_411at 480.925 kb on - strand, within Pf1N1B4_411at 480.925 kb on - strand, within Pf1N1B4_411at 480.925 kb on - strand, within Pf1N1B4_411at 481.345 kb on + strandat 481.345 kb on + strandat 481.345 kb on + strandat 481.346 kb on - strandat 481.346 kb on - strandat 481.346 kb on - strandat 481.346 kb on - strandat 481.346 kb on - strandat 481.346 kb on - strandat 481.346 kb on - strandat 481.417 kb on + strandat 481.418 kb on - strandat 481.418 kb on - strandat 481.450 kb on + strandat 481.537 kb on + strandat 481.550 kb on + strandat 481.550 kb on + strandat 481.550 kb on + strandat 481.550 kb on + strandat 481.551 kb on - strandat 481.593 kb on + strandat 481.796 kb on + strand, within Pf1N1B4_412at 481.796 kb on + strand, within Pf1N1B4_412at 482.087 kb on - strand, within Pf1N1B4_412at 482.123 kb on - strand, within Pf1N1B4_412

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
479,577 + Pf1N1B4_410 0.50 -1.5
479,578 - Pf1N1B4_410 0.50 +1.5
479,578 - Pf1N1B4_410 0.50 +0.9
479,578 - Pf1N1B4_410 0.50 -1.1
479,578 - Pf1N1B4_410 0.50 +0.2
479,578 - Pf1N1B4_410 0.50 -0.1
479,578 - Pf1N1B4_410 0.50 +1.3
479,578 - Pf1N1B4_410 0.50 +0.9
479,616 - Pf1N1B4_410 0.53 +0.3
479,616 - Pf1N1B4_410 0.53 -1.1
479,693 - Pf1N1B4_410 0.58 +1.1
479,730 + Pf1N1B4_410 0.60 +0.5
479,730 + +2.5
479,731 - -0.1
479,731 - +1.9
479,938 + Pf1N1B4_410 0.74 -1.1
480,154 - Pf1N1B4_410 0.88 -0.1
480,332 + +1.9
480,332 + +0.7
480,333 - +0.9
480,346 + -0.7
480,347 - +0.9
480,347 - +0.1
480,347 - -0.4
480,473 - -0.7
480,493 - -0.4
480,493 - +0.9
480,493 - -0.1
480,493 - -1.1
480,493 - -0.9
480,528 + Pf1N1B4_411 0.11 +0.3
480,528 + Pf1N1B4_411 0.11 +1.5
480,528 + Pf1N1B4_411 0.11 +1.5
480,528 + Pf1N1B4_411 0.11 -0.5
480,529 - Pf1N1B4_411 0.12 -1.7
480,529 - Pf1N1B4_411 0.12 -0.1
480,529 - Pf1N1B4_411 0.12 -0.1
480,529 - Pf1N1B4_411 0.12 +0.9
480,529 - Pf1N1B4_411 0.12 +0.4
480,529 - Pf1N1B4_411 0.12 +1.4
480,529 - Pf1N1B4_411 0.12 +1.0
480,529 - Pf1N1B4_411 0.12 +0.5
480,529 - Pf1N1B4_411 0.12 +0.7
480,549 + Pf1N1B4_411 0.14 -0.9
480,549 + Pf1N1B4_411 0.14 +0.9
480,886 + Pf1N1B4_411 0.47 -0.3
480,906 + Pf1N1B4_411 0.49 +1.1
480,907 - Pf1N1B4_411 0.49 +0.6
480,907 - Pf1N1B4_411 0.49 +0.9
480,924 + Pf1N1B4_411 0.51 +1.5
480,924 + Pf1N1B4_411 0.51 +0.5
480,925 - +0.9
480,925 - Pf1N1B4_411 0.51 +1.5
480,925 - Pf1N1B4_411 0.51 +1.5
480,925 - Pf1N1B4_411 0.51 +0.5
480,925 - Pf1N1B4_411 0.51 +1.5
481,345 + -2.4
481,345 + -0.5
481,345 + +0.5
481,346 - -0.1
481,346 - +1.5
481,346 - +2.5
481,346 - +0.3
481,346 - +0.9
481,346 - +0.5
481,346 - +0.2
481,417 + -0.3
481,418 - +0.7
481,418 - +1.0
481,450 + -1.7
481,537 + +1.3
481,550 + +1.3
481,550 + +0.1
481,550 + +0.1
481,550 + +0.3
481,551 - -2.7
481,593 + -0.6
481,796 + Pf1N1B4_412 0.31 +0.9
481,796 + Pf1N1B4_412 0.31 +0.1
482,087 - Pf1N1B4_412 0.67 -1.4
482,123 - Pf1N1B4_412 0.71 +0.5

Or see this region's nucleotide sequence