Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08890

Experiment: N2 fixation, H2 media

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N2 fixation, H2 media
1,639,201	+		MMJJ_RS08885	0.32	-0.8
1,639,203	+		MMJJ_RS08885	0.32	+1.0
1,639,203	+		MMJJ_RS08885	0.32	-0.8
1,639,219	-		MMJJ_RS08885	0.33	-0.9
1,639,265	-		MMJJ_RS08885	0.36	-1.2
1,639,267	-		MMJJ_RS08885	0.37	+0.2
1,639,350	+		MMJJ_RS08885	0.42	+0.6
1,639,350	+		MMJJ_RS08885	0.42	+1.2
1,639,424	-		MMJJ_RS08885	0.48	-0.1
1,639,445	+		MMJJ_RS08885	0.49	-2.3
1,639,445	+		MMJJ_RS08885	0.49	+1.1
1,639,489	+		MMJJ_RS08885	0.52	-2.9
1,639,510	+		MMJJ_RS08885	0.54	-2.1
1,639,510	+		MMJJ_RS08885	0.54	-1.5
1,639,575	+		MMJJ_RS08885	0.58	+4.4
1,639,601	-		MMJJ_RS08885	0.60	+1.0
1,639,602	+		MMJJ_RS08885	0.60	-1.9
1,639,699	+		MMJJ_RS08885	0.67	-1.4
1,639,709	-		MMJJ_RS08885	0.67	+0.1
1,639,772	+		MMJJ_RS08885	0.72	-0.5
1,639,772	+		MMJJ_RS08885	0.72	+0.4
1,639,791	-		MMJJ_RS08885	0.73	-0.3
1,639,811	-		MMJJ_RS08885	0.75	-0.1
1,639,823	-		MMJJ_RS08885	0.75	+1.5
1,639,823	-		MMJJ_RS08885	0.75	-1.4
1,639,824	+		MMJJ_RS08885	0.75	+0.9
1,639,848	+		MMJJ_RS08885	0.77	+0.1
1,639,866	-		MMJJ_RS08885	0.78	+0.2
1,639,885	+		MMJJ_RS08885	0.80	-0.8
1,639,898	-		MMJJ_RS08885	0.81	-0.3
1,639,958	-		MMJJ_RS08885	0.85	+1.9
1,639,993	+		MMJJ_RS08885	0.87	+0.7
1,639,997	-		MMJJ_RS08885	0.88	+0.6
1,639,997	-		MMJJ_RS08885	0.88	+0.8
1,640,004	-		MMJJ_RS08885	0.88	+1.6
1,640,004	-		MMJJ_RS08885	0.88	-0.5
1,640,004	-		MMJJ_RS08885	0.88	-1.9
1,640,005	+		MMJJ_RS08885	0.88	-1.7
1,640,005	+		MMJJ_RS08885	0.88	+0.5
1,640,005	+		MMJJ_RS08885	0.88	+0.6
1,640,006	-		MMJJ_RS08885	0.88	+0.8
1,640,007	+		MMJJ_RS08885	0.88	+0.4
1,640,018	+		MMJJ_RS08885	0.89	+0.9
1,640,022	+		MMJJ_RS08885	0.89	+0.5
1,640,045	+				+0.5
1,640,045	+				+1.8
1,640,077	-				-0.3
1,640,175	+				-0.3
1,640,186	-				+0.6
1,640,187	+				-0.4
1,640,200	-				-0.4
1,640,201	+				-0.9
1,640,245	+				+4.3
1,640,245	+				-1.6
1,640,245	+				+0.4
1,640,281	-				+0.8
1,640,281	-				-0.9
1,640,281	-				+1.5
1,640,282	+				-1.7
1,640,366	+		MMJJ_RS08890	0.12	+1.6
1,640,366	+		MMJJ_RS08890	0.12	+0.6
1,640,399	-		MMJJ_RS08890	0.15	-0.2
1,640,399	-		MMJJ_RS08890	0.15	-0.7
1,640,404	+		MMJJ_RS08890	0.15	-0.8
1,640,417	-		MMJJ_RS08890	0.16	+1.6
1,640,418	+		MMJJ_RS08890	0.16	-0.8
1,640,419	-		MMJJ_RS08890	0.16	-0.1
1,640,419	-		MMJJ_RS08890	0.16	+0.0
1,640,420	+		MMJJ_RS08890	0.16	+1.3
1,640,422	-		MMJJ_RS08890	0.16	+0.3
1,640,422	-		MMJJ_RS08890	0.16	-2.4
1,640,423	+		MMJJ_RS08890	0.16	+0.3
1,640,427	-		MMJJ_RS08890	0.17	+1.5
1,640,427	-		MMJJ_RS08890	0.17	+1.3
1,640,427	-		MMJJ_RS08890	0.17	-1.1
1,640,427	-				+1.1
1,640,428	+		MMJJ_RS08890	0.17	+1.9
1,640,452	-		MMJJ_RS08890	0.18	+0.1
1,640,452	-		MMJJ_RS08890	0.18	-1.3
1,640,482	+		MMJJ_RS08890	0.20	+0.5
1,640,482	+		MMJJ_RS08890	0.20	+0.0
1,640,485	+		MMJJ_RS08890	0.21	-0.4
1,640,485	+		MMJJ_RS08890	0.21	-0.8
1,640,485	+		MMJJ_RS08890	0.21	-0.3
1,640,485	+		MMJJ_RS08890	0.21	-0.7
1,640,533	-		MMJJ_RS08890	0.24	-2.2
1,640,534	+		MMJJ_RS08890	0.24	+2.9
1,640,534	+		MMJJ_RS08890	0.24	+0.5
1,640,542	-		MMJJ_RS08890	0.25	+1.2
1,640,583	-		MMJJ_RS08890	0.27	-1.7
1,640,583	-		MMJJ_RS08890	0.27	-1.2
1,640,584	+		MMJJ_RS08890	0.27	-2.0
1,640,584	+		MMJJ_RS08890	0.27	+0.5
1,640,584	+		MMJJ_RS08890	0.27	-1.5
1,640,602	-		MMJJ_RS08890	0.29	-1.6
1,640,611	-		MMJJ_RS08890	0.29	+0.7
1,640,703	-		MMJJ_RS08890	0.36	-1.9
1,640,703	-		MMJJ_RS08890	0.36	-1.6
1,640,752	+		MMJJ_RS08890	0.39	-1.0
1,640,773	-		MMJJ_RS08890	0.40	-1.1
1,640,852	-		MMJJ_RS08890	0.46	-2.0
1,640,852	-		MMJJ_RS08890	0.46	-1.4
1,640,852	-		MMJJ_RS08890	0.46	+0.5
1,640,852	-		MMJJ_RS08890	0.46	-0.0
1,640,853	+		MMJJ_RS08890	0.46	-0.5
1,640,853	+		MMJJ_RS08890	0.46	+1.3
1,640,862	-		MMJJ_RS08890	0.47	+0.6
1,640,862	-		MMJJ_RS08890	0.47	+0.1
1,640,863	+		MMJJ_RS08890	0.47	+1.1
1,640,863	+		MMJJ_RS08890	0.47	-0.0
1,640,864	-		MMJJ_RS08890	0.47	-0.8
1,640,864	-		MMJJ_RS08890	0.47	-2.1
1,640,864	-		MMJJ_RS08890	0.47	-1.7
1,640,864	-		MMJJ_RS08890	0.47	-0.7
1,640,865	+		MMJJ_RS08890	0.47	-0.3
1,640,865	+		MMJJ_RS08890	0.47	-1.5
1,640,865	+		MMJJ_RS08890	0.47	-1.6
1,640,865	+		MMJJ_RS08890	0.47	-0.3
1,640,865	+		MMJJ_RS08890	0.47	+0.2
1,640,865	+		MMJJ_RS08890	0.47	+6.8
1,640,865	+		MMJJ_RS08890	0.47	+0.7
1,640,865	+		MMJJ_RS08890	0.47	-0.7
1,640,865	+		MMJJ_RS08890	0.47	-1.1
1,640,866	-		MMJJ_RS08890	0.47	-0.6
1,640,866	-		MMJJ_RS08890	0.47	-0.2
1,640,866	-		MMJJ_RS08890	0.47	-0.8
1,640,866	-		MMJJ_RS08890	0.47	-0.4
1,640,866	-		MMJJ_RS08890	0.47	+3.0
1,640,866	-		MMJJ_RS08890	0.47	-1.0
1,640,866	-		MMJJ_RS08890	0.47	-1.6
1,640,866	-		MMJJ_RS08890	0.47	-0.9
1,640,866	-		MMJJ_RS08890	0.47	-0.8
1,640,866	-		MMJJ_RS08890	0.47	+0.0
1,640,866	-		MMJJ_RS08890	0.47	-1.6
1,640,867	+		MMJJ_RS08890	0.47	+0.2
1,640,867	+		MMJJ_RS08890	0.47	+0.5
1,640,867	+		MMJJ_RS08890	0.47	-1.8
1,640,867	+		MMJJ_RS08890	0.47	+0.8
1,640,867	+		MMJJ_RS08890	0.47	+0.1
1,640,867	+		MMJJ_RS08890	0.47	+1.1
1,640,867	+		MMJJ_RS08890	0.47	-1.5
1,640,867	+		MMJJ_RS08890	0.47	+0.5
1,640,968	-		MMJJ_RS08890	0.54	-0.5
1,640,968	-		MMJJ_RS08890	0.54	-0.4
1,640,969	+		MMJJ_RS08890	0.54	-0.6
1,641,032	+		MMJJ_RS08890	0.58	-1.1
1,641,033	-		MMJJ_RS08890	0.58	-1.7
1,641,035	-		MMJJ_RS08890	0.59	-1.2
1,641,112	+		MMJJ_RS08890	0.64	-1.7
1,641,115	-				+1.1
1,641,156	-		MMJJ_RS08890	0.67	-1.9
1,641,160	+		MMJJ_RS08890	0.67	-0.1
1,641,220	+		MMJJ_RS08890	0.71	-2.7
1,641,361	-		MMJJ_RS08890	0.81	+1.5
1,641,362	+		MMJJ_RS08890	0.81	+1.9
1,641,394	-		MMJJ_RS08890	0.83	-0.7
1,641,434	+		MMJJ_RS08890	0.86	+0.5
1,641,440	-		MMJJ_RS08890	0.86	+1.1
1,641,440	-		MMJJ_RS08890	0.86	+1.3
1,641,441	+		MMJJ_RS08890	0.87	-1.3
1,641,441	+		MMJJ_RS08890	0.87	-0.1
1,641,441	+		MMJJ_RS08890	0.87	+0.5
1,641,445	+		MMJJ_RS08890	0.87	-1.2
1,641,445	+		MMJJ_RS08890	0.87	+0.3
1,641,445	+		MMJJ_RS08890	0.87	-1.3
1,641,466	-		MMJJ_RS08890	0.88	-0.6
1,641,468	-		MMJJ_RS08890	0.88	-1.2
1,641,505	-				+2.9
1,641,542	+				-1.0
1,641,547	+				-0.7
1,641,551	-				-1.0
1,641,607	+				+0.5
1,641,686	-				+2.3
1,641,687	+				-0.2
1,641,715	+				-0.1
1,641,730	+				+0.8
1,641,730	+				-0.9
1,641,760	-				+0.4
1,641,760	-				-0.3
1,641,773	-				+1.6
1,641,874	-				-0.5
1,641,900	+				-0.1
1,641,950	+				-1.5
1,642,047	-		MMJJ_RS08900	0.19	+2.8
1,642,081	+		MMJJ_RS08900	0.23	+1.1
1,642,081	+		MMJJ_RS08900	0.23	-1.6
1,642,082	-		MMJJ_RS08900	0.23	-1.0
1,642,082	-		MMJJ_RS08900	0.23	-1.5
1,642,082	-		MMJJ_RS08900	0.23	-0.2
1,642,082	-		MMJJ_RS08900	0.23	-0.5
1,642,082	-		MMJJ_RS08900	0.23	+0.0
1,642,082	-		MMJJ_RS08900	0.23	+0.6
1,642,082	-		MMJJ_RS08900	0.23	+1.0
1,642,082	-		MMJJ_RS08900	0.23	-0.1
1,642,083	+		MMJJ_RS08900	0.23	+2.9
1,642,083	+		MMJJ_RS08900	0.23	-1.2
1,642,083	+		MMJJ_RS08900	0.23	-0.1
1,642,083	+		MMJJ_RS08900	0.23	-1.2
1,642,083	+		MMJJ_RS08900	0.23	+0.5
1,642,083	+		MMJJ_RS08900	0.23	+0.5
1,642,083	+		MMJJ_RS08900	0.23	-2.0
1,642,083	+		MMJJ_RS08900	0.23	+0.3
1,642,083	+		MMJJ_RS08900	0.23	+0.4
1,642,083	+		MMJJ_RS08900	0.23	+0.1
1,642,083	+		MMJJ_RS08900	0.23	-1.0
1,642,083	+		MMJJ_RS08900	0.23	+1.1
1,642,083	+		MMJJ_RS08900	0.23	-0.8
1,642,084	-		MMJJ_RS08900	0.23	-0.0
1,642,095	+		MMJJ_RS08900	0.24	-0.3
1,642,095	+		MMJJ_RS08900	0.24	-1.2
1,642,109	-		MMJJ_RS08900	0.26	+0.9
1,642,112	-		MMJJ_RS08900	0.26	+1.2
1,642,211	-		MMJJ_RS08900	0.36	+6.7
1,642,218	-		MMJJ_RS08900	0.37	+1.4
1,642,243	-		MMJJ_RS08900	0.39	-0.4
1,642,244	+		MMJJ_RS08900	0.40	+0.3
1,642,244	+		MMJJ_RS08900	0.40	-1.2
1,642,244	+		MMJJ_RS08900	0.40	+1.1
1,642,244	+		MMJJ_RS08900	0.40	-1.1
1,642,250	-		MMJJ_RS08900	0.40	-0.8
1,642,263	+		MMJJ_RS08900	0.41	-0.3
1,642,335	+		MMJJ_RS08900	0.49	-1.4
1,642,337	+		MMJJ_RS08900	0.49	+1.0
1,642,338	-		MMJJ_RS08900	0.49	-2.2
1,642,339	+		MMJJ_RS08900	0.49	+0.2
1,642,363	+		MMJJ_RS08900	0.52	-1.6
1,642,377	+		MMJJ_RS08900	0.53	+1.5
1,642,418	+		MMJJ_RS08900	0.57	-0.6
1,642,418	+		MMJJ_RS08900	0.57	-2.0
1,642,419	-		MMJJ_RS08900	0.58	+1.5
1,642,420	+		MMJJ_RS08900	0.58	+0.2
1,642,420	+		MMJJ_RS08900	0.58	-1.1
1,642,420	+		MMJJ_RS08900	0.58	+5.2
1,642,420	+		MMJJ_RS08900	0.58	+1.6
1,642,480	-		MMJJ_RS08900	0.64	-0.2
1,642,542	+		MMJJ_RS08900	0.70	+0.6
1,642,594	-		MMJJ_RS08900	0.76	+0.1
1,642,595	+		MMJJ_RS08900	0.76	-0.1
1,642,602	+		MMJJ_RS08900	0.76	+1.1
1,642,610	-		MMJJ_RS08900	0.77	+1.5
1,642,611	+		MMJJ_RS08900	0.77	+0.5
1,642,620	+		MMJJ_RS08900	0.78	-0.7