Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05875

Experiment: N2 fixation, H2 media

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N2 fixation, H2 media
1,088,052	+				+0.4
1,088,200	+		MMJJ_RS05870	0.19	-0.9
1,088,217	-		MMJJ_RS05870	0.22	+0.1
1,088,221	+		MMJJ_RS05870	0.23	-1.3
1,088,240	+		MMJJ_RS05870	0.26	+0.4
1,088,263	+		MMJJ_RS05870	0.30	-0.6
1,088,263	+		MMJJ_RS05870	0.30	+2.7
1,088,338	+		MMJJ_RS05870	0.43	+1.0
1,088,367	-		MMJJ_RS05870	0.49	+0.1
1,088,405	-		MMJJ_RS05870	0.55	-0.6
1,088,406	+		MMJJ_RS05870	0.55	-0.3
1,088,406	+		MMJJ_RS05870	0.55	-1.7
1,088,547	-		MMJJ_RS05870	0.80	-0.0
1,088,553	-		MMJJ_RS05870	0.82	+0.8
1,088,619	+				-1.7
1,088,638	-				-2.0
1,088,639	+				+0.1
1,088,643	-				-0.8
1,088,643	-				+0.7
1,088,644	+				+1.2
1,088,660	+				-1.0
1,088,663	+				+1.3
1,088,663	+				-0.2
1,088,670	+				-0.2
1,088,712	-				-1.3
1,088,712	-				-0.3
1,088,712	-				-0.4
1,088,713	+				+0.7
1,088,713	+				-0.4
1,088,713	+				-2.2
1,088,717	+				+0.7
1,088,757	-				+1.1
1,088,758	+				+1.8
1,088,761	-				-1.4
1,088,762	+				-0.4
1,088,762	+				-1.5
1,088,770	+				-0.3
1,088,792	-				-1.6
1,088,793	+				+1.2
1,088,843	+				-0.8
1,088,843	+				-1.3
1,088,843	+				+0.1
1,088,849	-				-1.3
1,088,850	+				-0.2
1,088,905	-				-0.6
1,088,910	-				+0.3
1,088,911	+				-0.2
1,088,955	-				+0.7
1,088,955	-				-0.7
1,088,955	-				-1.5
1,088,956	+				-2.9
1,088,965	+				-1.0
1,089,003	+		MMJJ_RS05875	0.11	+2.7
1,089,086	-		MMJJ_RS05875	0.14	+0.2
1,089,097	-		MMJJ_RS05875	0.14	+0.7
1,089,097	-		MMJJ_RS05875	0.14	-1.9
1,089,097	-		MMJJ_RS05875	0.14	+1.9
1,089,097	-		MMJJ_RS05875	0.14	+0.9
1,089,097	-		MMJJ_RS05875	0.14	-0.2
1,089,098	+		MMJJ_RS05875	0.14	+0.9
1,089,121	+		MMJJ_RS05875	0.15	+0.1
1,089,153	+		MMJJ_RS05875	0.16	-0.1
1,089,157	+		MMJJ_RS05875	0.16	-0.7
1,089,157	+		MMJJ_RS05875	0.16	+0.1
1,089,186	+		MMJJ_RS05875	0.17	-0.3
1,089,188	+		MMJJ_RS05875	0.17	-0.8
1,089,196	+		MMJJ_RS05875	0.17	+0.3
1,089,236	-		MMJJ_RS05875	0.19	-0.1
1,089,236	-		MMJJ_RS05875	0.19	-1.9
1,089,237	+		MMJJ_RS05875	0.19	-2.1
1,089,240	-		MMJJ_RS05875	0.19	-1.7
1,089,241	+		MMJJ_RS05875	0.19	-0.7
1,089,268	-				+2.4
1,089,269	+		MMJJ_RS05875	0.20	-1.9
1,089,269	+		MMJJ_RS05875	0.20	-0.1
1,089,269	+		MMJJ_RS05875	0.20	-0.2
1,089,278	-		MMJJ_RS05875	0.20	-0.6
1,089,278	-		MMJJ_RS05875	0.20	-0.3
1,089,278	-		MMJJ_RS05875	0.20	-0.3
1,089,279	+		MMJJ_RS05875	0.20	+1.1
1,089,279	+		MMJJ_RS05875	0.20	-1.8
1,089,279	+		MMJJ_RS05875	0.20	-0.8
1,089,279	+		MMJJ_RS05875	0.20	+0.1
1,089,332	-		MMJJ_RS05875	0.22	-0.5
1,089,332	-		MMJJ_RS05875	0.22	+0.1
1,089,332	-		MMJJ_RS05875	0.22	-0.6
1,089,337	+		MMJJ_RS05875	0.22	-0.6
1,089,356	-		MMJJ_RS05875	0.23	+0.0
1,089,357	+		MMJJ_RS05875	0.23	-0.6
1,089,357	+		MMJJ_RS05875	0.23	+0.1
1,089,365	-		MMJJ_RS05875	0.23	+0.7
1,089,366	+		MMJJ_RS05875	0.23	+2.6
1,089,400	-		MMJJ_RS05875	0.24	-1.6
1,089,413	-		MMJJ_RS05875	0.24	+0.5
1,089,413	-		MMJJ_RS05875	0.24	-1.3
1,089,413	-		MMJJ_RS05875	0.24	-1.5
1,089,415	-		MMJJ_RS05875	0.24	+0.0
1,089,416	+		MMJJ_RS05875	0.25	+0.6
1,089,433	-		MMJJ_RS05875	0.25	-1.6
1,089,433	-		MMJJ_RS05875	0.25	-0.2
1,089,438	-		MMJJ_RS05875	0.25	-0.3
1,089,439	+		MMJJ_RS05875	0.25	-0.8
1,089,513	+		MMJJ_RS05875	0.28	-0.0
1,089,514	-		MMJJ_RS05875	0.28	+0.5
1,089,514	-		MMJJ_RS05875	0.28	+0.8
1,089,515	+		MMJJ_RS05875	0.28	-0.8
1,089,515	+		MMJJ_RS05875	0.28	-0.1
1,089,579	-		MMJJ_RS05875	0.30	-1.3
1,089,579	-		MMJJ_RS05875	0.30	-0.5
1,089,591	-		MMJJ_RS05875	0.30	+0.5
1,089,591	-		MMJJ_RS05875	0.30	-1.6
1,089,591	-		MMJJ_RS05875	0.30	+0.2
1,089,591	-		MMJJ_RS05875	0.30	+1.2
1,089,592	+		MMJJ_RS05875	0.30	+2.3
1,089,624	-		MMJJ_RS05875	0.31	-1.1
1,089,625	+		MMJJ_RS05875	0.31	-0.9
1,089,686	+		MMJJ_RS05875	0.33	-0.1
1,089,702	-		MMJJ_RS05875	0.34	-0.3
1,089,711	-		MMJJ_RS05875	0.34	-1.8
1,089,711	-		MMJJ_RS05875	0.34	-0.1
1,089,711	-		MMJJ_RS05875	0.34	+2.0
1,089,712	+		MMJJ_RS05875	0.34	-1.6
1,089,712	+		MMJJ_RS05875	0.34	-1.0
1,089,713	-		MMJJ_RS05875	0.34	+0.2
1,089,748	-		MMJJ_RS05875	0.35	-0.9
1,089,750	-		MMJJ_RS05875	0.35	+0.8
1,089,750	-		MMJJ_RS05875	0.35	+0.2
1,089,750	-		MMJJ_RS05875	0.35	+0.3
1,089,750	-		MMJJ_RS05875	0.35	+0.8
1,089,750	-		MMJJ_RS05875	0.35	-1.6
1,089,750	-		MMJJ_RS05875	0.35	-0.2
1,089,751	+		MMJJ_RS05875	0.35	+1.1
1,089,751	+		MMJJ_RS05875	0.35	-0.1
1,089,751	+		MMJJ_RS05875	0.35	+1.0
1,089,751	+		MMJJ_RS05875	0.35	-0.1
1,089,752	-		MMJJ_RS05875	0.35	+2.6
1,089,752	-		MMJJ_RS05875	0.35	-0.8
1,089,753	+		MMJJ_RS05875	0.35	-0.5
1,089,800	-		MMJJ_RS05875	0.37	+0.1
1,089,801	+		MMJJ_RS05875	0.37	-0.4
1,089,805	+		MMJJ_RS05875	0.37	+0.4
1,089,805	+		MMJJ_RS05875	0.37	+3.0
1,089,805	+		MMJJ_RS05875	0.37	+0.9
1,089,837	+		MMJJ_RS05875	0.38	-0.1
1,089,847	+		MMJJ_RS05875	0.38	-1.0
1,089,858	-		MMJJ_RS05875	0.39	-1.8
1,089,858	-		MMJJ_RS05875	0.39	-0.5
1,089,938	-		MMJJ_RS05875	0.41	-0.5
1,089,973	+		MMJJ_RS05875	0.43	+0.4
1,090,112	-		MMJJ_RS05875	0.47	+0.1
1,090,170	-		MMJJ_RS05875	0.49	-0.0
1,090,171	+		MMJJ_RS05875	0.49	-1.0
1,090,171	+		MMJJ_RS05875	0.49	+0.3
1,090,243	+		MMJJ_RS05875	0.51	+1.2
1,090,243	+		MMJJ_RS05875	0.51	+0.5
1,090,305	+		MMJJ_RS05875	0.53	+0.5
1,090,346	-		MMJJ_RS05875	0.55	-2.3
1,090,346	-		MMJJ_RS05875	0.55	+0.3
1,090,346	-		MMJJ_RS05875	0.55	-1.0
1,090,356	-		MMJJ_RS05875	0.55	+2.0
1,090,356	-		MMJJ_RS05875	0.55	-1.5
1,090,356	-		MMJJ_RS05875	0.55	-1.3
1,090,357	+		MMJJ_RS05875	0.55	+1.3
1,090,357	+		MMJJ_RS05875	0.55	+0.4
1,090,357	+		MMJJ_RS05875	0.55	-0.0
1,090,357	+		MMJJ_RS05875	0.55	+0.4
1,090,360	-		MMJJ_RS05875	0.55	+1.3
1,090,360	-		MMJJ_RS05875	0.55	-0.6
1,090,361	+		MMJJ_RS05875	0.55	-0.6
1,090,361	+		MMJJ_RS05875	0.55	-1.8
1,090,400	-		MMJJ_RS05875	0.56	-1.7
1,090,401	+		MMJJ_RS05875	0.56	-1.0
1,090,401	+				+3.0
1,090,402	-		MMJJ_RS05875	0.56	+0.6
1,090,427	+		MMJJ_RS05875	0.57	+1.0
1,090,463	-		MMJJ_RS05875	0.58	-1.3
1,090,464	+				+3.0
1,090,464	+		MMJJ_RS05875	0.58	-2.2
1,090,464	+		MMJJ_RS05875	0.58	-0.2
1,090,544	+		MMJJ_RS05875	0.61	-0.8
1,090,570	-		MMJJ_RS05875	0.62	+2.1
1,090,570	-		MMJJ_RS05875	0.62	-0.1
1,090,571	+		MMJJ_RS05875	0.62	+0.4
1,090,571	+		MMJJ_RS05875	0.62	-0.2
1,090,571	+		MMJJ_RS05875	0.62	-0.4
1,090,571	+		MMJJ_RS05875	0.62	-1.4
1,090,574	-		MMJJ_RS05875	0.62	+0.6
1,090,590	-		MMJJ_RS05875	0.63	+0.5
1,090,593	-		MMJJ_RS05875	0.63	-1.0
1,090,594	+		MMJJ_RS05875	0.63	+1.7
1,090,601	+		MMJJ_RS05875	0.63	+0.2
1,090,634	-		MMJJ_RS05875	0.64	+2.6
1,090,635	+		MMJJ_RS05875	0.64	+1.6
1,090,640	+		MMJJ_RS05875	0.64	-0.2
1,090,644	-		MMJJ_RS05875	0.64	-1.4
1,090,645	+		MMJJ_RS05875	0.64	-0.4
1,090,700	-		MMJJ_RS05875	0.66	-0.3
1,090,704	-		MMJJ_RS05875	0.66	-0.7
1,090,726	+		MMJJ_RS05875	0.67	-0.8
1,090,767	-		MMJJ_RS05875	0.68	-0.6
1,090,768	+		MMJJ_RS05875	0.68	-2.0
1,090,770	-		MMJJ_RS05875	0.68	-0.4
1,090,822	+		MMJJ_RS05875	0.70	-0.4
1,090,846	+		MMJJ_RS05875	0.71	+0.6
1,090,863	-		MMJJ_RS05875	0.71	+0.4
1,090,864	+		MMJJ_RS05875	0.71	-0.9
1,090,890	-		MMJJ_RS05875	0.72	+2.4
1,090,891	+		MMJJ_RS05875	0.72	+0.4
1,090,891	+		MMJJ_RS05875	0.72	+0.3
1,090,916	+		MMJJ_RS05875	0.73	-1.0
1,090,917	-		MMJJ_RS05875	0.73	-1.2
1,090,917	-		MMJJ_RS05875	0.73	-0.2
1,090,948	+		MMJJ_RS05875	0.74	-0.3
1,090,948	+		MMJJ_RS05875	0.74	-0.0
1,090,998	+		MMJJ_RS05875	0.76	-1.1
1,091,028	+		MMJJ_RS05875	0.77	+0.8
1,091,052	-		MMJJ_RS05875	0.77	+0.6
1,091,057	-		MMJJ_RS05875	0.78	-1.2
1,091,097	+		MMJJ_RS05875	0.79	+2.0
1,091,115	+		MMJJ_RS05875	0.80	-2.2
1,091,118	-		MMJJ_RS05875	0.80	+0.9
1,091,136	-		MMJJ_RS05875	0.80	-0.2
1,091,136	-		MMJJ_RS05875	0.80	+1.3
1,091,151	+		MMJJ_RS05875	0.81	+0.1
1,091,179	+		MMJJ_RS05875	0.82	+0.7
1,091,186	-		MMJJ_RS05875	0.82	-0.5
1,091,187	+		MMJJ_RS05875	0.82	-1.7
1,091,189	-		MMJJ_RS05875	0.82	-1.3
1,091,190	+		MMJJ_RS05875	0.82	-0.6
1,091,198	-		MMJJ_RS05875	0.82	-1.5
1,091,199	+		MMJJ_RS05875	0.82	+0.3
1,091,223	-		MMJJ_RS05875	0.83	+0.3
1,091,224	+		MMJJ_RS05875	0.83	-2.1
1,091,224	+		MMJJ_RS05875	0.83	-0.8
1,091,325	-		MMJJ_RS05875	0.86	-1.6
1,091,325	-		MMJJ_RS05875	0.86	+1.4
1,091,325	-		MMJJ_RS05875	0.86	+0.5
1,091,326	+		MMJJ_RS05875	0.86	+1.0
1,091,337	-		MMJJ_RS05875	0.87	-0.0
1,091,340	-		MMJJ_RS05875	0.87	-0.4
1,091,341	+		MMJJ_RS05875	0.87	-0.2
1,091,379	-		MMJJ_RS05875	0.88	-1.0
1,091,390	-		MMJJ_RS05875	0.88	-1.6
1,091,390	-		MMJJ_RS05875	0.88	-1.3
1,091,392	-		MMJJ_RS05875	0.88	-0.0
1,091,400	-		MMJJ_RS05875	0.89	-0.3
1,091,400	-		MMJJ_RS05875	0.89	+0.1
1,091,401	+		MMJJ_RS05875	0.89	-0.8
1,091,401	+		MMJJ_RS05875	0.89	-1.0
1,091,428	+		MMJJ_RS05875	0.90	+2.9
1,091,489	-				-0.1
1,091,491	-				-1.0
1,091,491	-				+0.2
1,091,502	-				+0.3
1,091,532	-				-0.2
1,091,555	-				+1.7
1,091,556	+				-0.8
1,091,560	+				+0.0
1,091,566	+				+0.7
1,091,568	-				+0.8
1,091,580	+				-1.2
1,091,595	-				+0.1
1,091,672	-				+0.1
1,091,678	-				+0.1
1,091,684	-				+2.6
1,091,685	+				-1.9
1,091,685	+				-1.0
1,091,697	+				-0.1
1,091,697	+				-0.8
1,091,698	-				+0.1
1,091,698	-				+1.0
1,091,698	-				-0.5
1,091,698	-				+1.3
1,091,698	-				+3.0
1,091,698	-				+1.6
1,091,699	+				-2.1
1,091,744	+				-1.9
1,091,747	-				-0.7
1,091,748	+				-0.7
1,091,748	+				+0.1
1,091,760	+				-0.5
1,091,801	+				-0.9
1,091,859	+				-0.5
1,091,867	-				+2.0
1,091,868	+				+1.1
1,091,869	-				+3.0
1,091,870	+				-0.5
1,091,870	+				-1.9
1,091,870	+				+1.1
1,091,870	+				-1.0
1,091,870	+				+0.8
1,091,897	-				-0.5
1,091,897	-				+1.0
1,091,897	-				-1.7
1,091,900	-				+1.6
1,091,900	-				-1.3
1,091,905	-				-0.7
1,091,905	-				-0.3
1,091,906	+				-1.6
1,091,906	+				+0.0
1,091,906	+				-0.1
1,091,906	+				-0.6
1,091,994	+				-0.3
1,091,999	-				-1.6
1,092,071	-		MMJJ_RS05880	0.10	-1.2
1,092,102	-		MMJJ_RS05880	0.11	-1.4
1,092,103	+		MMJJ_RS05880	0.11	-2.1
1,092,106	-		MMJJ_RS05880	0.12	-1.6
1,092,131	-		MMJJ_RS05880	0.12	-1.5
1,092,136	-		MMJJ_RS05880	0.13	+0.4
1,092,136	-		MMJJ_RS05880	0.13	-1.0
1,092,137	+		MMJJ_RS05880	0.13	-2.7
1,092,191	+		MMJJ_RS05880	0.14	-0.3
1,092,210	+		MMJJ_RS05880	0.15	-0.4
1,092,212	+		MMJJ_RS05880	0.15	-1.4
1,092,221	-		MMJJ_RS05880	0.15	-0.8
1,092,281	-		MMJJ_RS05880	0.17	+0.3
1,092,282	+		MMJJ_RS05880	0.17	+0.6
1,092,341	-		MMJJ_RS05880	0.19	-0.3
1,092,342	+		MMJJ_RS05880	0.19	-1.1
1,092,342	+		MMJJ_RS05880	0.19	-0.7
1,092,342	+		MMJJ_RS05880	0.19	-2.7
1,092,356	-		MMJJ_RS05880	0.20	+1.7
1,092,357	+		MMJJ_RS05880	0.20	-0.8
1,092,362	+		MMJJ_RS05880	0.20	-1.2
1,092,362	+		MMJJ_RS05880	0.20	-1.3
1,092,382	-		MMJJ_RS05880	0.20	-0.2
1,092,383	+		MMJJ_RS05880	0.21	-0.9
1,092,423	+		MMJJ_RS05880	0.22	-0.1
1,092,464	+		MMJJ_RS05880	0.23	+0.5
1,092,476	+		MMJJ_RS05880	0.24	+0.5
1,092,505	-		MMJJ_RS05880	0.24	-1.7
1,092,506	+		MMJJ_RS05880	0.25	+0.8
1,092,531	-		MMJJ_RS05880	0.25	+1.0
1,092,531	-		MMJJ_RS05880	0.25	-0.0
1,092,531	-		MMJJ_RS05880	0.25	-1.1
1,092,531	-		MMJJ_RS05880	0.25	-0.7
1,092,531	-		MMJJ_RS05880	0.25	-0.3
1,092,531	-		MMJJ_RS05880	0.25	-0.2
1,092,532	+		MMJJ_RS05880	0.25	-0.5
1,092,532	+		MMJJ_RS05880	0.25	+1.1
1,092,532	+		MMJJ_RS05880	0.25	-1.3
1,092,583	-		MMJJ_RS05880	0.27	+0.3
1,092,640	-		MMJJ_RS05880	0.29	-1.6
1,092,665	-		MMJJ_RS05880	0.30	+0.7
1,092,665	-		MMJJ_RS05880	0.30	-0.9
1,092,665	-		MMJJ_RS05880	0.30	-0.5
1,092,671	+		MMJJ_RS05880	0.30	+1.6
1,092,671	+		MMJJ_RS05880	0.30	+2.8
1,092,674	-		MMJJ_RS05880	0.30	+0.0
1,092,674	-		MMJJ_RS05880	0.30	-0.0
1,092,674	-		MMJJ_RS05880	0.30	-1.0
1,092,675	+		MMJJ_RS05880	0.30	+1.6
1,092,705	-				+4.0
1,092,706	+		MMJJ_RS05880	0.31	-1.4
1,092,714	+		MMJJ_RS05880	0.31	-0.2