Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00735

Experiment: N2 fixation, H2 media

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N2 fixation, H2 media
141,669	-		MMJJ_RS00725	0.68	-1.7
141,713	-		MMJJ_RS00725	0.75	-0.3
141,713	-		MMJJ_RS00725	0.75	-0.2
141,714	+		MMJJ_RS00725	0.75	+0.4
141,715	-		MMJJ_RS00725	0.75	+0.9
141,715	-		MMJJ_RS00725	0.75	-0.0
141,715	-		MMJJ_RS00725	0.75	+1.0
141,715	-		MMJJ_RS00725	0.75	+0.1
141,716	+		MMJJ_RS00725	0.75	+1.3
141,716	+		MMJJ_RS00725	0.75	+4.2
141,716	+		MMJJ_RS00725	0.75	-0.5
141,724	-		MMJJ_RS00725	0.77	-0.9
141,772	-		MMJJ_RS00725	0.84	-1.1
141,785	-		MMJJ_RS00725	0.87	+1.4
141,786	+		MMJJ_RS00725	0.87	-1.0
141,786	+		MMJJ_RS00725	0.87	-0.4
141,791	-		MMJJ_RS00725	0.88	-1.9
141,792	+		MMJJ_RS00725	0.88	+2.2
141,794	-		MMJJ_RS00725	0.88	-1.7
141,794	-		MMJJ_RS00725	0.88	+8.9
141,794	-		MMJJ_RS00725	0.88	-0.6
141,795	+		MMJJ_RS00725	0.88	+0.1
141,818	+				-1.2
141,818	+				+0.8
141,857	+				-1.1
141,857	+				+2.8
141,891	-				+0.8
141,899	-				+0.8
141,899	-				-0.3
141,899	-				+0.7
141,900	+				+0.6
141,903	-				+0.7
141,904	+				+0.2
141,904	+				+0.8
141,904	+				+1.6
141,912	-				+0.4
141,913	+				-0.8
141,973	-				+1.1
141,974	+				-0.2
141,974	+				-0.7
141,992	-				-2.2
141,992	-				+1.0
141,993	+				+0.2
141,993	+				-0.5
141,993	+				-1.1
141,993	+				+0.8
142,004	-				+0.4
142,005	+				+0.5
142,005	+				+8.0
142,005	+				+0.3
142,008	-				+1.1
142,009	+				-0.8
142,043	+				+0.3
142,061	-				+0.2
142,077	+				-0.4
142,077	+				+0.2
142,077	+				-1.8
142,096	-				+3.3
142,097	+				+1.1
142,100	+				-1.2
142,100	+				-1.5
142,101	-				-0.3
142,181	+		MMJJ_RS00730	0.12	+0.6
142,202	+		MMJJ_RS00730	0.17	-0.7
142,252	+		MMJJ_RS00730	0.27	-0.3
142,284	+		MMJJ_RS00730	0.34	-0.3
142,292	+		MMJJ_RS00730	0.36	-1.6
142,306	+		MMJJ_RS00730	0.39	-1.8
142,318	-		MMJJ_RS00730	0.41	+0.4
142,318	-		MMJJ_RS00730	0.41	+0.4
142,318	-		MMJJ_RS00730	0.41	-0.4
142,318	-		MMJJ_RS00730	0.41	-0.4
142,319	+		MMJJ_RS00730	0.42	-1.9
142,326	-		MMJJ_RS00730	0.43	+1.9
142,326	-		MMJJ_RS00730	0.43	+0.0
142,327	+		MMJJ_RS00730	0.43	+0.1
142,327	+		MMJJ_RS00730	0.43	+3.5
142,327	+		MMJJ_RS00730	0.43	+0.8
142,327	+		MMJJ_RS00730	0.43	+1.3
142,340	+		MMJJ_RS00730	0.46	-0.3
142,356	+				+1.6
142,370	-		MMJJ_RS00730	0.52	+0.2
142,407	-		MMJJ_RS00730	0.60	+0.8
142,417	+		MMJJ_RS00730	0.62	-0.2
142,419	+		MMJJ_RS00730	0.63	-0.3
142,425	-		MMJJ_RS00730	0.64	+1.0
142,447	-		MMJJ_RS00730	0.69	-0.3
142,485	+		MMJJ_RS00730	0.77	-0.9
142,499	+		MMJJ_RS00730	0.80	+0.2
142,530	-		MMJJ_RS00730	0.86	+3.3
142,557	-				+0.1
142,574	-				+1.8
142,665	-				-1.4
142,666	+				-0.7
142,666	+				-0.9
142,704	+				+0.3
142,732	-		MMJJ_RS00735	0.10	-0.6
142,836	+		MMJJ_RS00735	0.28	-1.5
142,836	+		MMJJ_RS00735	0.28	-1.5
142,839	+		MMJJ_RS00735	0.28	-0.1
142,841	-		MMJJ_RS00735	0.29	+0.4
142,841	-		MMJJ_RS00735	0.29	-0.8
142,842	+		MMJJ_RS00735	0.29	-0.5
142,847	-		MMJJ_RS00735	0.30	+1.3
142,889	-		MMJJ_RS00735	0.37	-0.5
142,926	-				+2.3
142,964	-		MMJJ_RS00735	0.49	+0.1
142,964	-		MMJJ_RS00735	0.49	-0.3
142,964	-		MMJJ_RS00735	0.49	-0.2
142,964	-		MMJJ_RS00735	0.49	+0.1
142,964	-		MMJJ_RS00735	0.49	-0.1
142,964	-		MMJJ_RS00735	0.49	-0.0
142,965	+		MMJJ_RS00735	0.49	-1.2
142,965	+		MMJJ_RS00735	0.49	+0.9
142,965	+		MMJJ_RS00735	0.49	-1.1
142,965	+		MMJJ_RS00735	0.49	+1.1
142,965	+		MMJJ_RS00735	0.49	+0.4
142,965	+		MMJJ_RS00735	0.49	+0.2
142,965	+		MMJJ_RS00735	0.49	-1.8
142,965	+		MMJJ_RS00735	0.49	-1.5
142,990	-		MMJJ_RS00735	0.54	+0.0
143,007	-		MMJJ_RS00735	0.56	+4.4
143,007	-		MMJJ_RS00735	0.56	-0.2
143,035	+		MMJJ_RS00735	0.61	-1.6
143,086	+		MMJJ_RS00735	0.69	-2.3
143,086	+		MMJJ_RS00735	0.69	-0.7
143,089	+		MMJJ_RS00735	0.70	+0.4
143,090	-		MMJJ_RS00735	0.70	+1.0
143,091	+		MMJJ_RS00735	0.70	-1.5
143,138	+		MMJJ_RS00735	0.78	-1.1
143,166	+		MMJJ_RS00735	0.83	-0.5
143,222	+				-0.6
143,222	+				+1.2
143,288	+				-0.9
143,314	+				+4.6
143,314	+				-1.6
143,345	+		MMJJ_RS00740	0.10	-1.8
143,406	-		MMJJ_RS00740	0.33	-1.1
143,406	-		MMJJ_RS00740	0.33	-0.9
143,410	-		MMJJ_RS00740	0.34	+0.4
143,413	-		MMJJ_RS00740	0.36	+1.8
143,414	+		MMJJ_RS00740	0.36	-1.1
143,416	-		MMJJ_RS00740	0.37	-1.6
143,416	-		MMJJ_RS00740	0.37	+1.2
143,416	-		MMJJ_RS00740	0.37	-1.8
143,416	-		MMJJ_RS00740	0.37	+1.6
143,416	-		MMJJ_RS00740	0.37	-1.0
143,417	+		MMJJ_RS00740	0.37	-1.0
143,417	+		MMJJ_RS00740	0.37	-0.6
143,432	-		MMJJ_RS00740	0.43	-0.6
143,432	-		MMJJ_RS00740	0.43	-1.6
143,433	+		MMJJ_RS00740	0.43	+1.9
143,443	-		MMJJ_RS00740	0.47	-0.1
143,465	-		MMJJ_RS00740	0.55	-0.1
143,466	+		MMJJ_RS00740	0.55	-0.6
143,507	-		MMJJ_RS00740	0.70	-2.4
143,508	+		MMJJ_RS00740	0.71	-0.4
143,517	-		MMJJ_RS00740	0.74	-0.1
143,518	+		MMJJ_RS00740	0.74	+1.2
143,527	-		MMJJ_RS00740	0.78	-1.7
143,527	-		MMJJ_RS00740	0.78	+1.8
143,556	+		MMJJ_RS00740	0.89	+0.3
143,630	-				-1.3
143,630	-				-2.6
143,631	+				-1.7
143,631	+				+0.1
143,632	-				-0.3
143,632	-				+2.6
143,633	+				+1.6
143,637	+				-0.6
143,694	-				-0.6
143,776	-				-0.7
143,776	-				-0.3
143,781	-				+0.9
143,781	-				+3.3
143,782	+				-2.7
143,782	+				+3.2
143,843	-				-0.2
143,851	+				-0.3
143,852	-				+1.3
143,853	+				-1.7
143,869	-		MMJJ_RS00745	0.13	-0.5
143,878	+		MMJJ_RS00745	0.15	-2.4
143,885	-		MMJJ_RS00745	0.17	+0.0
143,922	-		MMJJ_RS00745	0.27	-0.1
143,928	+		MMJJ_RS00745	0.29	-0.9
143,952	+		MMJJ_RS00745	0.36	-0.2
144,196	+				+0.5
144,197	-				+0.3
144,197	-				-0.0
144,198	+				-2.9
144,198	+				+3.5
144,201	-				-0.9
144,202	+				+1.3
144,205	+				-0.9
144,205	+				-0.6
144,208	+				+1.6
144,208	+				+1.2
144,217	+				-0.3
144,261	-				+0.0
144,262	+				-1.9
144,263	-				+0.9