Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3868

Experiment: LB, pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3866 and Ac3H11_3867 are separated by 29 nucleotidesAc3H11_3867 and Ac3H11_3868 overlap by 9 nucleotidesAc3H11_3868 and Ac3H11_3869 are separated by 16 nucleotidesAc3H11_3869 and Ac3H11_3870 are separated by 209 nucleotides Ac3H11_3866 - Regulatory protein, LuxR, at 83,572 to 84,744 _3866 Ac3H11_3867 - hypothetical protein, at 84,774 to 84,926 _3867 Ac3H11_3868 - peptidase, M48 family( EC:3.4.24.- ), at 84,918 to 86,549 _3868 Ac3H11_3869 - hypothetical protein, at 86,566 to 86,886 _3869 Ac3H11_3870 - conserved hypothetical protein, at 87,096 to 87,566 _3870 Position (kb) 84 85 86 87Strain fitness (log2 ratio) -2 -1 0 1at 83.932 kb on + strand, within Ac3H11_3866at 83.932 kb on + strand, within Ac3H11_3866at 83.932 kb on + strand, within Ac3H11_3866at 83.933 kb on - strand, within Ac3H11_3866at 84.016 kb on + strand, within Ac3H11_3866at 84.016 kb on + strand, within Ac3H11_3866at 84.016 kb on + strand, within Ac3H11_3866at 84.016 kb on + strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.211 kb on + strand, within Ac3H11_3866at 84.211 kb on + strand, within Ac3H11_3866at 84.670 kb on + strandat 84.671 kb on - strandat 84.671 kb on - strandat 84.671 kb on - strandat 84.757 kb on + strandat 85.002 kb on + strandat 85.003 kb on - strandat 85.089 kb on + strand, within Ac3H11_3868at 85.089 kb on + strand, within Ac3H11_3868at 85.089 kb on + strand, within Ac3H11_3868at 85.089 kb on + strand, within Ac3H11_3868at 85.090 kb on - strand, within Ac3H11_3868at 85.090 kb on - strand, within Ac3H11_3868at 85.090 kb on - strand, within Ac3H11_3868at 85.195 kb on - strand, within Ac3H11_3868at 85.195 kb on - strand, within Ac3H11_3868at 85.368 kb on + strand, within Ac3H11_3868at 85.369 kb on - strand, within Ac3H11_3868at 85.755 kb on + strand, within Ac3H11_3868at 85.812 kb on + strand, within Ac3H11_3868at 85.812 kb on + strand, within Ac3H11_3868at 85.813 kb on - strand, within Ac3H11_3868at 85.813 kb on - strand, within Ac3H11_3868at 85.813 kb on - strand, within Ac3H11_3868at 85.813 kb on - strand, within Ac3H11_3868at 85.813 kb on - strand, within Ac3H11_3868at 85.813 kb on - strand, within Ac3H11_3868at 85.891 kb on - strand, within Ac3H11_3868at 85.891 kb on - strand, within Ac3H11_3868at 85.891 kb on - strand, within Ac3H11_3868at 86.175 kb on + strand, within Ac3H11_3868at 86.175 kb on + strand, within Ac3H11_3868at 86.175 kb on + strand, within Ac3H11_3868at 86.176 kb on - strand, within Ac3H11_3868at 86.176 kb on - strand, within Ac3H11_3868at 86.176 kb on - strand, within Ac3H11_3868at 86.176 kb on - strand, within Ac3H11_3868at 86.322 kb on + strand, within Ac3H11_3868at 86.322 kb on + strand, within Ac3H11_3868at 86.322 kb on + strand, within Ac3H11_3868at 86.322 kb on + strand, within Ac3H11_3868at 86.322 kb on + strand, within Ac3H11_3868at 86.322 kb on + strand, within Ac3H11_3868at 86.322 kb on + strand, within Ac3H11_3868at 86.322 kb on + strand, within Ac3H11_3868at 86.323 kb on - strand, within Ac3H11_3868at 86.323 kb on - strand, within Ac3H11_3868at 86.323 kb on - strand, within Ac3H11_3868at 86.323 kb on - strand, within Ac3H11_3868at 86.323 kb on - strand, within Ac3H11_3868at 86.323 kb on - strand, within Ac3H11_3868at 86.323 kb on - strand, within Ac3H11_3868at 86.323 kb on - strand, within Ac3H11_3868at 86.400 kb on + strandat 86.400 kb on + strandat 86.400 kb on + strandat 86.400 kb on + strandat 86.400 kb on + strandat 86.400 kb on + strandat 86.400 kb on + strandat 86.400 kb on + strandat 86.400 kb on + strandat 86.400 kb on + strandat 86.400 kb on + strandat 86.401 kb on - strandat 86.460 kb on + strandat 86.460 kb on + strandat 86.460 kb on + strandat 86.460 kb on + strandat 86.460 kb on + strandat 86.461 kb on - strandat 86.461 kb on - strandat 86.461 kb on - strandat 86.461 kb on - strandat 86.461 kb on - strandat 86.532 kb on + strandat 86.532 kb on + strandat 86.532 kb on + strandat 86.532 kb on + strandat 86.532 kb on + strandat 86.533 kb on - strandat 86.547 kb on + strandat 86.547 kb on + strandat 86.547 kb on + strandat 86.548 kb on - strandat 86.548 kb on - strandat 86.916 kb on + strandat 86.916 kb on + strandat 86.916 kb on + strandat 86.916 kb on + strandat 86.916 kb on + strandat 86.916 kb on + strandat 86.917 kb on - strandat 86.945 kb on - strandat 86.987 kb on - strandat 87.055 kb on + strandat 87.055 kb on + strandat 87.056 kb on - strandat 87.184 kb on + strand, within Ac3H11_3870at 87.184 kb on + strand, within Ac3H11_3870at 87.184 kb on + strand, within Ac3H11_3870at 87.184 kb on + strand, within Ac3H11_3870at 87.185 kb on - strand, within Ac3H11_3870at 87.185 kb on - strand, within Ac3H11_3870at 87.185 kb on - strand, within Ac3H11_3870at 87.306 kb on + strand, within Ac3H11_3870at 87.307 kb on - strand, within Ac3H11_3870at 87.307 kb on - strand, within Ac3H11_3870at 87.307 kb on - strand, within Ac3H11_3870at 87.339 kb on + strand, within Ac3H11_3870at 87.340 kb on - strand, within Ac3H11_3870at 87.340 kb on - strand, within Ac3H11_3870at 87.340 kb on - strand, within Ac3H11_3870

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH7
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83,932 + Ac3H11_3866 0.31 -0.1
83,932 + Ac3H11_3866 0.31 -0.8
83,932 + Ac3H11_3866 0.31 +0.4
83,933 - Ac3H11_3866 0.31 +0.1
84,016 + Ac3H11_3866 0.38 -0.4
84,016 + Ac3H11_3866 0.38 -0.1
84,016 + Ac3H11_3866 0.38 -1.1
84,016 + Ac3H11_3866 0.38 -1.2
84,017 - Ac3H11_3866 0.38 -0.6
84,017 - Ac3H11_3866 0.38 +0.1
84,017 - Ac3H11_3866 0.38 -0.4
84,017 - Ac3H11_3866 0.38 -0.8
84,017 - Ac3H11_3866 0.38 -1.8
84,211 + Ac3H11_3866 0.54 -0.8
84,211 + Ac3H11_3866 0.54 -1.4
84,670 + +0.9
84,671 - -1.7
84,671 - -0.8
84,671 - -0.3
84,757 + -1.4
85,002 + -0.7
85,003 - +0.5
85,089 + Ac3H11_3868 0.10 +0.0
85,089 + Ac3H11_3868 0.10 +0.7
85,089 + Ac3H11_3868 0.10 -0.3
85,089 + Ac3H11_3868 0.10 -0.2
85,090 - Ac3H11_3868 0.11 +0.2
85,090 - Ac3H11_3868 0.11 -0.6
85,090 - Ac3H11_3868 0.11 -0.1
85,195 - Ac3H11_3868 0.17 +0.1
85,195 - Ac3H11_3868 0.17 +0.4
85,368 + Ac3H11_3868 0.28 +1.0
85,369 - Ac3H11_3868 0.28 -0.9
85,755 + Ac3H11_3868 0.51 -0.7
85,812 + Ac3H11_3868 0.55 -0.2
85,812 + Ac3H11_3868 0.55 -0.2
85,813 - Ac3H11_3868 0.55 +0.6
85,813 - Ac3H11_3868 0.55 +0.0
85,813 - Ac3H11_3868 0.55 +0.8
85,813 - Ac3H11_3868 0.55 -0.1
85,813 - Ac3H11_3868 0.55 -0.6
85,813 - Ac3H11_3868 0.55 +1.2
85,891 - Ac3H11_3868 0.60 -0.9
85,891 - Ac3H11_3868 0.60 +1.3
85,891 - Ac3H11_3868 0.60 -0.8
86,175 + Ac3H11_3868 0.77 -0.0
86,175 + Ac3H11_3868 0.77 -0.8
86,175 + Ac3H11_3868 0.77 -1.0
86,176 - Ac3H11_3868 0.77 -0.5
86,176 - Ac3H11_3868 0.77 +0.7
86,176 - Ac3H11_3868 0.77 +0.4
86,176 - Ac3H11_3868 0.77 -0.2
86,322 + Ac3H11_3868 0.86 +0.0
86,322 + Ac3H11_3868 0.86 -0.0
86,322 + Ac3H11_3868 0.86 -0.4
86,322 + Ac3H11_3868 0.86 -0.3
86,322 + Ac3H11_3868 0.86 -0.6
86,322 + Ac3H11_3868 0.86 +0.2
86,322 + Ac3H11_3868 0.86 -0.0
86,322 + Ac3H11_3868 0.86 -0.3
86,323 - Ac3H11_3868 0.86 +1.6
86,323 - Ac3H11_3868 0.86 -0.4
86,323 - Ac3H11_3868 0.86 +0.5
86,323 - Ac3H11_3868 0.86 +0.1
86,323 - Ac3H11_3868 0.86 -0.5
86,323 - Ac3H11_3868 0.86 +0.1
86,323 - Ac3H11_3868 0.86 +0.8
86,323 - Ac3H11_3868 0.86 -0.6
86,400 + +0.1
86,400 + -0.6
86,400 + +0.0
86,400 + +0.1
86,400 + +0.6
86,400 + +0.2
86,400 + +0.5
86,400 + -0.1
86,400 + -1.0
86,400 + +1.0
86,400 + -0.2
86,401 - +0.9
86,460 + -0.5
86,460 + +0.0
86,460 + -0.2
86,460 + +1.0
86,460 + -0.1
86,461 - +0.5
86,461 - +0.0
86,461 - +0.1
86,461 - +0.3
86,461 - -0.4
86,532 + -0.0
86,532 + -0.8
86,532 + +0.3
86,532 + +0.0
86,532 + +0.3
86,533 - +0.4
86,547 + -0.3
86,547 + -0.1
86,547 + +0.5
86,548 - -0.6
86,548 - +0.3
86,916 + +0.0
86,916 + +0.3
86,916 + -0.3
86,916 + -1.0
86,916 + -0.8
86,916 + +0.3
86,917 - -0.2
86,945 - -0.3
86,987 - +0.4
87,055 + +0.0
87,055 + +0.7
87,056 - -0.2
87,184 + Ac3H11_3870 0.19 -0.3
87,184 + Ac3H11_3870 0.19 -0.5
87,184 + Ac3H11_3870 0.19 +0.4
87,184 + Ac3H11_3870 0.19 +0.0
87,185 - Ac3H11_3870 0.19 -0.5
87,185 - Ac3H11_3870 0.19 -0.1
87,185 - Ac3H11_3870 0.19 -0.6
87,306 + Ac3H11_3870 0.45 -0.9
87,307 - Ac3H11_3870 0.45 +0.5
87,307 - Ac3H11_3870 0.45 +1.4
87,307 - Ac3H11_3870 0.45 -0.8
87,339 + Ac3H11_3870 0.52 +0.8
87,340 - Ac3H11_3870 0.52 -0.7
87,340 - Ac3H11_3870 0.52 -0.2
87,340 - Ac3H11_3870 0.52 -0.8

Or see this region's nucleotide sequence