Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004055 and ABIE53_004056 are separated by 3 nucleotides ABIE53_004056 and ABIE53_004057 are separated by 45 nucleotides ABIE53_004057 and ABIE53_004058 are separated by 81 nucleotides
ABIE53_004055: ABIE53_004055 - thioredoxin reductase (NADPH), at 213,946 to 215,619
_004055
ABIE53_004056: ABIE53_004056 - chemotaxis protein MotB, at 215,623 to 216,315
_004056
ABIE53_004057: ABIE53_004057 - chemotaxis protein MotA, at 216,361 to 217,125
_004057
ABIE53_004058: ABIE53_004058 - CRP-like cAMP-binding protein, at 217,207 to 218,442
_004058
Position (kb) 216
217
218 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 215.379 kb on + strand, within ABIE53_004055 at 215.379 kb on + strand, within ABIE53_004055 at 215.379 kb on + strand, within ABIE53_004055 at 215.380 kb on - strand, within ABIE53_004055 at 215.628 kb on - strand at 215.688 kb on + strand at 215.737 kb on + strand, within ABIE53_004056 at 215.737 kb on + strand, within ABIE53_004056 at 215.737 kb on + strand, within ABIE53_004056 at 215.950 kb on + strand, within ABIE53_004056 at 215.950 kb on + strand, within ABIE53_004056 at 215.951 kb on - strand, within ABIE53_004056 at 215.951 kb on - strand, within ABIE53_004056 at 216.091 kb on + strand, within ABIE53_004056 at 216.133 kb on + strand, within ABIE53_004056 at 216.133 kb on + strand, within ABIE53_004056 at 216.170 kb on + strand, within ABIE53_004056 at 216.170 kb on + strand, within ABIE53_004056 at 216.171 kb on - strand, within ABIE53_004056 at 216.215 kb on + strand, within ABIE53_004056 at 216.250 kb on - strand at 216.309 kb on + strand at 216.309 kb on + strand at 216.310 kb on - strand at 216.310 kb on - strand at 216.310 kb on - strand at 216.310 kb on - strand at 216.310 kb on - strand at 216.315 kb on + strand at 216.315 kb on + strand at 216.315 kb on + strand at 216.316 kb on - strand at 216.316 kb on - strand at 216.420 kb on + strand at 216.464 kb on + strand, within ABIE53_004057 at 216.464 kb on + strand, within ABIE53_004057 at 216.465 kb on - strand, within ABIE53_004057 at 216.465 kb on - strand, within ABIE53_004057 at 216.529 kb on + strand, within ABIE53_004057 at 216.529 kb on + strand, within ABIE53_004057 at 216.530 kb on - strand, within ABIE53_004057 at 216.530 kb on - strand, within ABIE53_004057 at 216.530 kb on - strand, within ABIE53_004057 at 216.554 kb on + strand, within ABIE53_004057 at 216.554 kb on + strand, within ABIE53_004057 at 216.555 kb on - strand, within ABIE53_004057 at 216.612 kb on + strand, within ABIE53_004057 at 216.612 kb on + strand, within ABIE53_004057 at 216.612 kb on + strand, within ABIE53_004057 at 216.613 kb on - strand, within ABIE53_004057 at 216.694 kb on - strand, within ABIE53_004057 at 216.714 kb on + strand, within ABIE53_004057 at 216.714 kb on + strand, within ABIE53_004057 at 216.715 kb on - strand, within ABIE53_004057 at 216.722 kb on + strand, within ABIE53_004057 at 216.723 kb on - strand, within ABIE53_004057 at 216.813 kb on + strand, within ABIE53_004057 at 216.813 kb on + strand, within ABIE53_004057 at 216.813 kb on + strand, within ABIE53_004057 at 216.814 kb on - strand, within ABIE53_004057 at 217.099 kb on + strand at 217.099 kb on + strand at 217.125 kb on + strand at 217.125 kb on + strand at 217.126 kb on - strand at 217.126 kb on - strand at 217.126 kb on - strand at 217.126 kb on - strand at 217.179 kb on - strand at 217.188 kb on - strand at 217.424 kb on + strand, within ABIE53_004058 at 217.425 kb on - strand, within ABIE53_004058 at 217.428 kb on + strand, within ABIE53_004058 at 217.556 kb on + strand, within ABIE53_004058 at 217.556 kb on + strand, within ABIE53_004058 at 217.815 kb on + strand, within ABIE53_004058 at 217.816 kb on - strand, within ABIE53_004058 at 218.042 kb on + strand, within ABIE53_004058 at 218.051 kb on - strand, within ABIE53_004058
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 215,379 + ABIE53_004055 0.86 -2.5 215,379 + ABIE53_004055 0.86 +1.5 215,379 + ABIE53_004055 0.86 -0.4 215,380 - ABIE53_004055 0.86 +2.0 215,628 - -1.5 215,688 + +0.7 215,737 + ABIE53_004056 0.16 -0.5 215,737 + ABIE53_004056 0.16 +0.5 215,737 + ABIE53_004056 0.16 -0.3 215,950 + ABIE53_004056 0.47 -0.5 215,950 + ABIE53_004056 0.47 -2.2 215,951 - ABIE53_004056 0.47 -0.1 215,951 - ABIE53_004056 0.47 -1.8 216,091 + ABIE53_004056 0.68 -0.1 216,133 + ABIE53_004056 0.74 -2.1 216,133 + ABIE53_004056 0.74 +0.9 216,170 + ABIE53_004056 0.79 +1.5 216,170 + ABIE53_004056 0.79 -2.4 216,171 - ABIE53_004056 0.79 +0.0 216,215 + ABIE53_004056 0.85 -2.0 216,250 - +0.5 216,309 + -0.9 216,309 + +1.6 216,310 - -0.1 216,310 - +1.0 216,310 - -0.9 216,310 - +1.5 216,310 - +0.1 216,315 + -0.5 216,315 + +0.6 216,315 + +2.5 216,316 - -1.1 216,316 - -0.5 216,420 + -1.5 216,464 + ABIE53_004057 0.13 -2.5 216,464 + ABIE53_004057 0.13 -0.1 216,465 - ABIE53_004057 0.14 -0.7 216,465 - ABIE53_004057 0.14 -2.5 216,529 + ABIE53_004057 0.22 -1.1 216,529 + ABIE53_004057 0.22 +2.5 216,530 - ABIE53_004057 0.22 -0.8 216,530 - ABIE53_004057 0.22 -0.6 216,530 - ABIE53_004057 0.22 +1.7 216,554 + ABIE53_004057 0.25 -0.9 216,554 + ABIE53_004057 0.25 +1.2 216,555 - ABIE53_004057 0.25 -0.5 216,612 + ABIE53_004057 0.33 -1.1 216,612 + ABIE53_004057 0.33 +1.5 216,612 + ABIE53_004057 0.33 -1.4 216,613 - ABIE53_004057 0.33 +1.0 216,694 - ABIE53_004057 0.44 -1.4 216,714 + ABIE53_004057 0.46 +0.5 216,714 + ABIE53_004057 0.46 -1.6 216,715 - ABIE53_004057 0.46 -2.7 216,722 + ABIE53_004057 0.47 +0.3 216,723 - ABIE53_004057 0.47 +1.2 216,813 + ABIE53_004057 0.59 -0.5 216,813 + ABIE53_004057 0.59 -1.5 216,813 + ABIE53_004057 0.59 -1.7 216,814 - ABIE53_004057 0.59 -2.5 217,099 + +0.4 217,099 + -2.1 217,125 + -1.1 217,125 + +0.5 217,126 - +0.6 217,126 - -0.4 217,126 - +1.8 217,126 - +0.5 217,179 - -0.1 217,188 - -2.4 217,424 + ABIE53_004058 0.18 +3.9 217,425 - ABIE53_004058 0.18 +0.7 217,428 + ABIE53_004058 0.18 +2.3 217,556 + ABIE53_004058 0.28 -0.9 217,556 + ABIE53_004058 0.28 -0.3 217,815 + ABIE53_004058 0.49 -1.4 217,816 - ABIE53_004058 0.49 -0.1 218,042 + ABIE53_004058 0.68 -1.9 218,051 - ABIE53_004058 0.68 -1.5
Or see this region's nucleotide sequence