Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_003878 and ABIE53_003879 are separated by 72 nucleotides ABIE53_003879 and ABIE53_003880 overlap by 4 nucleotides
ABIE53_003878: ABIE53_003878 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 17,595 to 18,596
_003878
ABIE53_003879: ABIE53_003879 - uncharacterized protein YgbK (DUF1537 family), at 18,669 to 20,015
_003879
ABIE53_003880: ABIE53_003880 - 2-keto-3-deoxygluconate permease, at 20,012 to 21,169
_003880
Position (kb) 18
19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 17.708 kb on + strand, within ABIE53_003878 at 17.708 kb on + strand, within ABIE53_003878 at 17.708 kb on + strand, within ABIE53_003878 at 17.708 kb on + strand, within ABIE53_003878 at 17.709 kb on - strand, within ABIE53_003878 at 17.709 kb on - strand, within ABIE53_003878 at 17.709 kb on - strand, within ABIE53_003878 at 17.709 kb on - strand, within ABIE53_003878 at 17.709 kb on - strand, within ABIE53_003878 at 17.791 kb on + strand, within ABIE53_003878 at 17.791 kb on + strand, within ABIE53_003878 at 17.791 kb on + strand, within ABIE53_003878 at 17.792 kb on - strand, within ABIE53_003878 at 17.792 kb on - strand, within ABIE53_003878 at 17.792 kb on - strand, within ABIE53_003878 at 17.792 kb on - strand, within ABIE53_003878 at 17.792 kb on - strand, within ABIE53_003878 at 17.792 kb on - strand, within ABIE53_003878 at 17.982 kb on - strand, within ABIE53_003878 at 18.160 kb on + strand, within ABIE53_003878 at 18.410 kb on + strand, within ABIE53_003878 at 18.411 kb on - strand, within ABIE53_003878 at 18.500 kb on - strand at 18.586 kb on + strand at 18.587 kb on - strand at 18.587 kb on - strand at 18.587 kb on - strand at 18.587 kb on - strand at 18.587 kb on - strand at 18.653 kb on + strand at 18.654 kb on - strand at 18.684 kb on + strand at 18.684 kb on + strand at 18.685 kb on - strand at 18.685 kb on - strand at 18.748 kb on + strand at 18.748 kb on + strand at 18.749 kb on - strand at 18.806 kb on + strand, within ABIE53_003879 at 18.806 kb on + strand, within ABIE53_003879 at 18.806 kb on + strand, within ABIE53_003879 at 18.807 kb on - strand, within ABIE53_003879 at 18.887 kb on + strand, within ABIE53_003879 at 19.041 kb on + strand, within ABIE53_003879 at 19.042 kb on - strand, within ABIE53_003879 at 19.221 kb on + strand, within ABIE53_003879 at 19.221 kb on + strand, within ABIE53_003879 at 19.221 kb on + strand, within ABIE53_003879 at 19.221 kb on + strand, within ABIE53_003879 at 19.221 kb on + strand, within ABIE53_003879 at 19.222 kb on - strand, within ABIE53_003879 at 19.222 kb on - strand, within ABIE53_003879 at 19.622 kb on + strand, within ABIE53_003879 at 19.622 kb on + strand, within ABIE53_003879 at 19.623 kb on - strand, within ABIE53_003879 at 19.780 kb on + strand, within ABIE53_003879 at 19.780 kb on + strand, within ABIE53_003879 at 19.780 kb on + strand, within ABIE53_003879 at 19.780 kb on + strand, within ABIE53_003879 at 19.781 kb on - strand, within ABIE53_003879 at 19.781 kb on - strand, within ABIE53_003879 at 19.781 kb on - strand, within ABIE53_003879 at 19.781 kb on - strand, within ABIE53_003879 at 19.942 kb on + strand at 20.042 kb on + strand at 20.043 kb on - strand at 20.149 kb on - strand, within ABIE53_003880 at 20.260 kb on - strand, within ABIE53_003880 at 20.260 kb on - strand, within ABIE53_003880 at 20.332 kb on + strand, within ABIE53_003880 at 20.332 kb on + strand, within ABIE53_003880 at 20.332 kb on + strand, within ABIE53_003880 at 20.333 kb on - strand, within ABIE53_003880 at 20.333 kb on - strand, within ABIE53_003880 at 20.333 kb on - strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.460 kb on - strand, within ABIE53_003880 at 20.460 kb on - strand, within ABIE53_003880 at 20.460 kb on - strand, within ABIE53_003880 at 20.460 kb on - strand, within ABIE53_003880 at 20.460 kb on - strand, within ABIE53_003880 at 20.559 kb on + strand, within ABIE53_003880 at 20.559 kb on + strand, within ABIE53_003880 at 20.559 kb on + strand, within ABIE53_003880 at 20.559 kb on + strand, within ABIE53_003880 at 20.559 kb on + strand, within ABIE53_003880 at 20.560 kb on - strand, within ABIE53_003880 at 20.560 kb on - strand, within ABIE53_003880 at 20.586 kb on + strand, within ABIE53_003880 at 20.586 kb on + strand, within ABIE53_003880 at 20.587 kb on - strand, within ABIE53_003880 at 20.607 kb on + strand, within ABIE53_003880 at 20.607 kb on + strand, within ABIE53_003880 at 20.607 kb on + strand, within ABIE53_003880 at 20.608 kb on - strand, within ABIE53_003880 at 20.608 kb on - strand, within ABIE53_003880 at 20.608 kb on - strand, within ABIE53_003880 at 20.608 kb on - strand, within ABIE53_003880 at 20.608 kb on - strand, within ABIE53_003880 at 20.608 kb on - strand, within ABIE53_003880 at 20.608 kb on - strand, within ABIE53_003880 at 20.778 kb on + strand, within ABIE53_003880 at 20.778 kb on + strand, within ABIE53_003880 at 20.778 kb on + strand, within ABIE53_003880 at 20.778 kb on + strand, within ABIE53_003880 at 20.778 kb on + strand, within ABIE53_003880 at 20.778 kb on + strand, within ABIE53_003880 at 20.778 kb on + strand, within ABIE53_003880 at 20.778 kb on + strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.820 kb on + strand, within ABIE53_003880 at 20.820 kb on + strand, within ABIE53_003880 at 20.820 kb on + strand, within ABIE53_003880 at 20.820 kb on + strand, within ABIE53_003880 at 20.821 kb on - strand, within ABIE53_003880 at 20.821 kb on - strand, within ABIE53_003880 at 20.821 kb on - strand, within ABIE53_003880 at 20.821 kb on - strand, within ABIE53_003880 at 20.821 kb on - strand, within ABIE53_003880 at 20.821 kb on - strand, within ABIE53_003880 at 20.921 kb on + strand, within ABIE53_003880 at 20.922 kb on - strand, within ABIE53_003880 at 20.922 kb on - strand, within ABIE53_003880 at 20.981 kb on + strand, within ABIE53_003880 at 20.981 kb on + strand, within ABIE53_003880 at 20.981 kb on + strand, within ABIE53_003880 at 20.981 kb on + strand, within ABIE53_003880 at 20.982 kb on - strand, within ABIE53_003880 at 20.982 kb on - strand, within ABIE53_003880 at 20.982 kb on - strand, within ABIE53_003880 at 20.982 kb on - strand, within ABIE53_003880
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 17,708 + ABIE53_003878 0.11 -2.5 17,708 + ABIE53_003878 0.11 -0.2 17,708 + ABIE53_003878 0.11 -1.6 17,708 + ABIE53_003878 0.11 -0.6 17,709 - ABIE53_003878 0.11 -1.2 17,709 - ABIE53_003878 0.11 -2.3 17,709 - ABIE53_003878 0.11 +0.4 17,709 - ABIE53_003878 0.11 +2.2 17,709 - ABIE53_003878 0.11 -2.5 17,791 + ABIE53_003878 0.20 +1.4 17,791 + ABIE53_003878 0.20 -1.9 17,791 + ABIE53_003878 0.20 -0.9 17,792 - ABIE53_003878 0.20 -0.6 17,792 - ABIE53_003878 0.20 -1.4 17,792 - ABIE53_003878 0.20 -0.9 17,792 - ABIE53_003878 0.20 -0.2 17,792 - ABIE53_003878 0.20 -0.6 17,792 - ABIE53_003878 0.20 -0.2 17,982 - ABIE53_003878 0.39 -0.6 18,160 + ABIE53_003878 0.56 +0.8 18,410 + ABIE53_003878 0.81 -0.6 18,411 - ABIE53_003878 0.81 -0.9 18,500 - -2.6 18,586 + -0.2 18,587 - -3.0 18,587 - +0.9 18,587 - +1.0 18,587 - -1.6 18,587 - -0.1 18,653 + +1.4 18,654 - -1.0 18,684 + -0.3 18,684 + +1.2 18,685 - -2.0 18,685 - +2.3 18,748 + +0.4 18,748 + +1.1 18,749 - -1.2 18,806 + ABIE53_003879 0.10 +2.7 18,806 + ABIE53_003879 0.10 -0.6 18,806 + ABIE53_003879 0.10 +1.8 18,807 - ABIE53_003879 0.10 -0.2 18,887 + ABIE53_003879 0.16 +0.9 19,041 + ABIE53_003879 0.28 -1.0 19,042 - ABIE53_003879 0.28 -2.7 19,221 + ABIE53_003879 0.41 -1.2 19,221 + ABIE53_003879 0.41 -0.2 19,221 + ABIE53_003879 0.41 -0.2 19,221 + ABIE53_003879 0.41 -1.5 19,221 + ABIE53_003879 0.41 -2.4 19,222 - ABIE53_003879 0.41 -0.2 19,222 - ABIE53_003879 0.41 +0.7 19,622 + ABIE53_003879 0.71 -3.0 19,622 + ABIE53_003879 0.71 -0.9 19,623 - ABIE53_003879 0.71 +0.1 19,780 + ABIE53_003879 0.82 +1.1 19,780 + ABIE53_003879 0.82 +0.4 19,780 + ABIE53_003879 0.82 -0.9 19,780 + ABIE53_003879 0.82 +0.5 19,781 - ABIE53_003879 0.83 -1.7 19,781 - ABIE53_003879 0.83 -0.9 19,781 - ABIE53_003879 0.83 -0.3 19,781 - ABIE53_003879 0.83 +0.0 19,942 + -0.6 20,042 + -2.6 20,043 - -0.2 20,149 - ABIE53_003880 0.12 -1.4 20,260 - ABIE53_003880 0.21 +0.2 20,260 - ABIE53_003880 0.21 -0.2 20,332 + ABIE53_003880 0.28 +1.1 20,332 + ABIE53_003880 0.28 -1.7 20,332 + ABIE53_003880 0.28 -0.7 20,333 - ABIE53_003880 0.28 -1.4 20,333 - ABIE53_003880 0.28 +1.8 20,333 - ABIE53_003880 0.28 -1.2 20,459 + ABIE53_003880 0.39 +1.3 20,459 + ABIE53_003880 0.39 -3.3 20,459 + ABIE53_003880 0.39 -0.9 20,459 + ABIE53_003880 0.39 +1.4 20,459 + ABIE53_003880 0.39 -3.0 20,459 + ABIE53_003880 0.39 -1.2 20,459 + ABIE53_003880 0.39 -1.2 20,459 + ABIE53_003880 0.39 +1.8 20,459 + ABIE53_003880 0.39 +1.4 20,460 - ABIE53_003880 0.39 -1.2 20,460 - ABIE53_003880 0.39 +0.4 20,460 - ABIE53_003880 0.39 -0.1 20,460 - ABIE53_003880 0.39 -0.9 20,460 - ABIE53_003880 0.39 -0.6 20,559 + ABIE53_003880 0.47 +0.4 20,559 + ABIE53_003880 0.47 -0.5 20,559 + ABIE53_003880 0.47 +3.0 20,559 + ABIE53_003880 0.47 -1.0 20,559 + ABIE53_003880 0.47 -3.2 20,560 - ABIE53_003880 0.47 +0.2 20,560 - ABIE53_003880 0.47 -1.5 20,586 + ABIE53_003880 0.50 -0.2 20,586 + ABIE53_003880 0.50 -1.2 20,587 - ABIE53_003880 0.50 +0.9 20,607 + ABIE53_003880 0.51 +1.8 20,607 + ABIE53_003880 0.51 -0.6 20,607 + ABIE53_003880 0.51 +1.6 20,608 - ABIE53_003880 0.51 +2.7 20,608 - ABIE53_003880 0.51 +1.8 20,608 - ABIE53_003880 0.51 +0.8 20,608 - ABIE53_003880 0.51 -1.7 20,608 - ABIE53_003880 0.51 -0.2 20,608 - ABIE53_003880 0.51 +2.9 20,608 - ABIE53_003880 0.51 -0.9 20,778 + ABIE53_003880 0.66 -2.0 20,778 + ABIE53_003880 0.66 +0.4 20,778 + ABIE53_003880 0.66 +0.8 20,778 + ABIE53_003880 0.66 -2.0 20,778 + ABIE53_003880 0.66 +1.5 20,778 + ABIE53_003880 0.66 +1.2 20,778 + ABIE53_003880 0.66 -0.6 20,778 + ABIE53_003880 0.66 +0.9 20,779 - ABIE53_003880 0.66 +2.1 20,779 - ABIE53_003880 0.66 -0.2 20,779 - ABIE53_003880 0.66 +0.4 20,779 - ABIE53_003880 0.66 +0.4 20,779 - ABIE53_003880 0.66 -1.1 20,779 - ABIE53_003880 0.66 -0.9 20,779 - ABIE53_003880 0.66 -2.0 20,779 - ABIE53_003880 0.66 +1.0 20,779 - ABIE53_003880 0.66 +0.1 20,820 + ABIE53_003880 0.70 -0.6 20,820 + ABIE53_003880 0.70 -2.4 20,820 + ABIE53_003880 0.70 +2.4 20,820 + ABIE53_003880 0.70 +1.2 20,821 - ABIE53_003880 0.70 +1.0 20,821 - ABIE53_003880 0.70 -0.9 20,821 - ABIE53_003880 0.70 -2.7 20,821 - ABIE53_003880 0.70 +0.1 20,821 - ABIE53_003880 0.70 -2.2 20,821 - ABIE53_003880 0.70 +2.0 20,921 + ABIE53_003880 0.78 -0.9 20,922 - ABIE53_003880 0.79 +1.2 20,922 - ABIE53_003880 0.79 +1.6 20,981 + ABIE53_003880 0.84 +0.4 20,981 + ABIE53_003880 0.84 -0.9 20,981 + ABIE53_003880 0.84 -0.6 20,981 + ABIE53_003880 0.84 -1.1 20,982 - ABIE53_003880 0.84 -0.9 20,982 - ABIE53_003880 0.84 -0.9 20,982 - ABIE53_003880 0.84 +3.2 20,982 - ABIE53_003880 0.84 +0.4
Or see this region's nucleotide sequence