Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002387

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
2,678,123	+		ABIE53_002386	0.43	+0.2
2,678,124	-		ABIE53_002386	0.43	+2.1
2,678,124	-		ABIE53_002386	0.43	-0.1
2,678,157	+		ABIE53_002386	0.45	-0.1
2,678,158	-		ABIE53_002386	0.45	-1.1
2,678,158	-		ABIE53_002386	0.45	-0.9
2,678,203	+		ABIE53_002386	0.48	+0.4
2,678,203	+		ABIE53_002386	0.48	+0.6
2,678,204	-		ABIE53_002386	0.48	-1.1
2,678,495	+		ABIE53_002386	0.69	-1.1
2,678,496	-		ABIE53_002386	0.69	-0.9
2,678,499	+		ABIE53_002386	0.69	+1.5
2,678,499	+		ABIE53_002386	0.69	-2.8
2,678,499	+		ABIE53_002386	0.69	-0.6
2,678,499	+		ABIE53_002386	0.69	-2.4
2,678,499	+		ABIE53_002386	0.69	+2.4
2,678,499	+		ABIE53_002386	0.69	-0.2
2,678,499	+		ABIE53_002386	0.69	-0.1
2,678,500	-		ABIE53_002386	0.69	-1.8
2,678,500	-		ABIE53_002386	0.69	+0.0
2,678,500	-		ABIE53_002386	0.69	-1.4
2,678,500	-		ABIE53_002386	0.69	-1.3
2,678,500	-		ABIE53_002386	0.69	-2.1
2,678,500	-		ABIE53_002386	0.69	-1.4
2,678,500	-		ABIE53_002386	0.69	-2.8
2,678,501	+		ABIE53_002386	0.69	+0.4
2,678,501	+		ABIE53_002386	0.69	-0.1
2,678,501	+		ABIE53_002386	0.69	+0.1
2,678,501	+		ABIE53_002386	0.69	-1.7
2,678,501	+		ABIE53_002386	0.69	+1.1
2,678,501	+		ABIE53_002386	0.69	-1.3
2,678,501	+		ABIE53_002386	0.69	-2.8
2,678,501	+		ABIE53_002386	0.69	+0.1
2,678,501	+		ABIE53_002386	0.69	+1.0
2,678,501	+		ABIE53_002386	0.69	-3.6
2,678,501	+		ABIE53_002386	0.69	+0.2
2,678,501	+		ABIE53_002386	0.69	-0.4
2,678,501	+		ABIE53_002386	0.69	-1.1
2,678,501	+		ABIE53_002386	0.69	-1.5
2,678,501	+		ABIE53_002386	0.69	-0.3
2,678,501	+		ABIE53_002386	0.69	-0.1
2,678,501	+		ABIE53_002386	0.69	-1.4
2,678,502	-		ABIE53_002386	0.69	-2.0
2,678,502	-		ABIE53_002386	0.69	-0.9
2,678,502	-		ABIE53_002386	0.69	+2.2
2,678,502	-		ABIE53_002386	0.69	-2.6
2,678,502	-		ABIE53_002386	0.69	+2.4
2,678,502	-		ABIE53_002386	0.69	-2.3
2,678,502	-		ABIE53_002386	0.69	+0.8
2,678,502	-		ABIE53_002386	0.69	+2.0
2,678,502	-		ABIE53_002386	0.69	+0.7
2,678,502	-		ABIE53_002386	0.69	+1.9
2,678,502	-		ABIE53_002386	0.69	+0.8
2,678,502	-		ABIE53_002386	0.69	+1.2
2,678,502	-		ABIE53_002386	0.69	+0.6
2,678,502	-		ABIE53_002386	0.69	+1.2
2,678,502	-		ABIE53_002386	0.69	-0.6
2,678,502	-		ABIE53_002386	0.69	-1.7
2,678,502	-		ABIE53_002386	0.69	+0.6
2,678,502	-		ABIE53_002386	0.69	+1.0
2,678,607	-		ABIE53_002386	0.77	+1.4
2,678,607	-		ABIE53_002386	0.77	-0.1
2,678,607	-		ABIE53_002386	0.77	-0.9
2,678,675	+		ABIE53_002386	0.82	-0.6
2,678,675	+		ABIE53_002386	0.82	-0.9
2,678,675	+		ABIE53_002386	0.82	-0.6
2,678,676	-		ABIE53_002386	0.82	+1.7
2,678,676	-		ABIE53_002386	0.82	-2.0
2,678,799	+				-1.2
2,678,801	+				-3.1
2,678,801	+				-0.9
2,678,801	+				+0.2
2,678,801	+				-2.3
2,678,802	-				+0.4
2,678,802	-				-2.1
2,678,802	-				-0.8
2,678,802	-				+0.3
2,678,802	-				+1.1
2,678,802	-				+1.4
2,678,802	-				+0.2
2,678,802	-				+2.2
2,678,895	+				+1.0
2,678,895	+				-0.1
2,678,896	-				+0.9
2,678,896	-				+0.2
2,679,105	+				-0.7
2,679,106	-				+0.4
2,679,106	-				-0.8
2,679,145	+		ABIE53_002387	0.16	-0.4
2,679,145	+		ABIE53_002387	0.16	-0.1
2,679,145	+		ABIE53_002387	0.16	-1.1
2,679,193	+		ABIE53_002387	0.34	-1.4
2,679,195	+		ABIE53_002387	0.35	+1.1
2,679,195	+		ABIE53_002387	0.35	+2.8
2,679,195	+		ABIE53_002387	0.35	-2.5
2,679,196	-		ABIE53_002387	0.36	-1.4
2,679,196	-		ABIE53_002387	0.36	+0.9
2,679,196	-		ABIE53_002387	0.36	-1.4
2,679,196	-		ABIE53_002387	0.36	-1.4
2,679,219	-		ABIE53_002387	0.45	-1.9
2,679,304	+		ABIE53_002387	0.78	+0.4
2,679,304	+		ABIE53_002387	0.78	-0.1
2,679,304	+		ABIE53_002387	0.78	+0.1
2,679,304	+		ABIE53_002387	0.78	-1.5
2,679,304	+		ABIE53_002387	0.78	-2.6
2,679,304	+		ABIE53_002387	0.78	-0.6
2,679,304	+		ABIE53_002387	0.78	+0.4
2,679,304	+		ABIE53_002387	0.78	-0.1
2,679,305	-		ABIE53_002387	0.78	+2.2
2,679,305	-		ABIE53_002387	0.78	+0.4
2,679,305	-		ABIE53_002387	0.78	+0.8
2,679,305	-		ABIE53_002387	0.78	+1.1
2,679,308	-		ABIE53_002387	0.79	+0.4
2,679,308	-		ABIE53_002387	0.79	-1.1
2,679,347	+				+1.4
2,679,388	+				-0.6
2,679,389	-				-1.7
2,679,392	+				+2.8
2,679,393	-				+0.4
2,679,393	-				+0.0
2,679,393	-				+0.6
2,679,393	-				-1.1
2,679,393	-				-0.1
2,679,427	+				-2.8
2,679,427	+				-1.9
2,679,428	-				-0.6
2,679,428	-				+0.6
2,679,687	+		ABIE53_002388	0.58	-2.1
2,679,777	+		ABIE53_002388	0.84	+1.4
2,679,777	+		ABIE53_002388	0.84	-0.6
2,679,810	+				+1.0
2,679,819	+				-0.1
2,679,819	+				+0.4
2,679,820	-				+2.1
2,679,879	+				+0.0
2,679,890	-				-0.2
2,680,026	+				-3.3
2,680,027	-				-0.6
2,680,102	+				+0.4
2,680,103	-				-0.1
2,680,204	+		ABIE53_002389	0.16	+0.0
2,680,204	+		ABIE53_002389	0.16	-0.5
2,680,204	+		ABIE53_002389	0.16	+0.5
2,680,205	-		ABIE53_002389	0.16	-0.5
2,680,219	+		ABIE53_002389	0.17	-1.6
2,680,219	+		ABIE53_002389	0.17	+0.9
2,680,220	-		ABIE53_002389	0.17	+1.3
2,680,220	-		ABIE53_002389	0.17	-1.6
2,680,220	-		ABIE53_002389	0.17	-2.5
2,680,277	-		ABIE53_002389	0.22	+1.4
2,680,277	-		ABIE53_002389	0.22	+1.7
2,680,318	+		ABIE53_002389	0.25	+0.4
2,680,318	+		ABIE53_002389	0.25	+1.9
2,680,319	-		ABIE53_002389	0.25	+0.3
2,680,319	-		ABIE53_002389	0.25	-2.6
2,680,339	+		ABIE53_002389	0.27	-3.0
2,680,339	+		ABIE53_002389	0.27	+1.9
2,680,339	+		ABIE53_002389	0.27	-0.6
2,680,339	+		ABIE53_002389	0.27	+0.9