Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000141 and ABIE53_000142 are separated by 137 nucleotides ABIE53_000142 and ABIE53_000143 are separated by 17 nucleotides ABIE53_000143 and ABIE53_000144 are separated by 217 nucleotides
ABIE53_000141: ABIE53_000141 - flagellin, at 146,656 to 147,828
_000141
ABIE53_000142: ABIE53_000142 - flagellar hook-associated protein 2, at 147,966 to 149,492
_000142
ABIE53_000143: ABIE53_000143 - flagellar protein FliT, at 149,510 to 149,809
_000143
ABIE53_000144: ABIE53_000144 - putative O-linked N-acetylglucosamine transferase (SPINDLY family), at 150,027 to 152,402
_000144
Position (kb) 147
148
149
150 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 147.027 kb on + strand, within ABIE53_000141 at 147.046 kb on + strand, within ABIE53_000141 at 147.046 kb on + strand, within ABIE53_000141 at 147.046 kb on + strand, within ABIE53_000141 at 147.046 kb on + strand, within ABIE53_000141 at 147.046 kb on + strand, within ABIE53_000141 at 147.046 kb on + strand, within ABIE53_000141 at 147.047 kb on - strand, within ABIE53_000141 at 147.047 kb on - strand, within ABIE53_000141 at 147.047 kb on - strand, within ABIE53_000141 at 147.047 kb on - strand, within ABIE53_000141 at 147.047 kb on - strand, within ABIE53_000141 at 147.047 kb on - strand, within ABIE53_000141 at 147.047 kb on - strand, within ABIE53_000141 at 147.047 kb on - strand, within ABIE53_000141 at 147.047 kb on - strand, within ABIE53_000141 at 147.081 kb on + strand, within ABIE53_000141 at 147.436 kb on + strand, within ABIE53_000141 at 147.436 kb on + strand, within ABIE53_000141 at 147.437 kb on - strand, within ABIE53_000141 at 147.437 kb on - strand, within ABIE53_000141 at 147.437 kb on - strand, within ABIE53_000141 at 147.437 kb on - strand, within ABIE53_000141 at 147.437 kb on - strand, within ABIE53_000141 at 147.437 kb on - strand, within ABIE53_000141 at 147.605 kb on + strand, within ABIE53_000141 at 147.605 kb on + strand, within ABIE53_000141 at 147.605 kb on + strand, within ABIE53_000141 at 147.605 kb on + strand, within ABIE53_000141 at 147.605 kb on + strand, within ABIE53_000141 at 147.605 kb on + strand, within ABIE53_000141 at 147.605 kb on + strand, within ABIE53_000141 at 147.605 kb on + strand, within ABIE53_000141 at 147.605 kb on + strand, within ABIE53_000141 at 147.605 kb on + strand, within ABIE53_000141 at 147.605 kb on + strand, within ABIE53_000141 at 147.605 kb on + strand, within ABIE53_000141 at 147.605 kb on + strand, within ABIE53_000141 at 147.606 kb on - strand, within ABIE53_000141 at 147.606 kb on - strand, within ABIE53_000141 at 147.768 kb on + strand at 147.768 kb on + strand at 147.768 kb on + strand at 147.769 kb on - strand at 147.769 kb on - strand at 147.769 kb on - strand at 147.769 kb on - strand at 147.826 kb on + strand at 147.826 kb on + strand at 147.827 kb on - strand at 147.827 kb on - strand at 147.829 kb on + strand at 147.829 kb on + strand at 147.829 kb on + strand at 147.829 kb on + strand at 147.829 kb on + strand at 147.829 kb on + strand at 147.829 kb on + strand at 147.829 kb on + strand at 147.830 kb on - strand at 147.830 kb on - strand at 147.830 kb on - strand at 147.830 kb on - strand at 147.830 kb on - strand at 147.830 kb on - strand at 147.830 kb on - strand at 147.882 kb on + strand at 147.883 kb on - strand at 147.925 kb on + strand at 147.934 kb on + strand at 147.934 kb on + strand at 147.934 kb on + strand at 147.935 kb on - strand at 148.117 kb on + strand at 148.266 kb on - strand, within ABIE53_000142 at 148.271 kb on + strand, within ABIE53_000142 at 148.338 kb on + strand, within ABIE53_000142 at 148.338 kb on + strand, within ABIE53_000142 at 148.338 kb on + strand, within ABIE53_000142 at 148.339 kb on - strand, within ABIE53_000142 at 148.339 kb on - strand, within ABIE53_000142 at 148.339 kb on - strand, within ABIE53_000142 at 148.535 kb on + strand, within ABIE53_000142 at 148.535 kb on + strand, within ABIE53_000142 at 148.535 kb on + strand, within ABIE53_000142 at 148.607 kb on + strand, within ABIE53_000142 at 148.608 kb on - strand, within ABIE53_000142 at 148.608 kb on - strand, within ABIE53_000142 at 148.608 kb on - strand, within ABIE53_000142 at 148.608 kb on - strand, within ABIE53_000142 at 148.941 kb on + strand, within ABIE53_000142 at 148.941 kb on + strand, within ABIE53_000142 at 148.941 kb on + strand, within ABIE53_000142 at 148.941 kb on + strand, within ABIE53_000142 at 148.942 kb on - strand, within ABIE53_000142 at 148.980 kb on + strand, within ABIE53_000142 at 148.981 kb on - strand, within ABIE53_000142 at 149.114 kb on + strand, within ABIE53_000142 at 149.236 kb on + strand, within ABIE53_000142 at 149.349 kb on + strand at 149.349 kb on + strand at 149.349 kb on + strand at 149.350 kb on - strand at 149.350 kb on - strand at 149.350 kb on - strand at 149.350 kb on - strand at 149.350 kb on - strand at 149.373 kb on + strand at 149.374 kb on - strand at 149.374 kb on - strand at 149.434 kb on - strand at 149.490 kb on + strand at 149.490 kb on + strand at 149.490 kb on + strand at 149.490 kb on + strand at 149.490 kb on + strand at 149.490 kb on + strand at 149.490 kb on + strand at 149.491 kb on - strand at 149.491 kb on - strand at 149.491 kb on - strand at 149.491 kb on - strand at 149.491 kb on - strand at 149.491 kb on - strand at 149.786 kb on + strand at 149.786 kb on + strand at 149.787 kb on - strand at 149.787 kb on - strand at 149.807 kb on + strand at 149.807 kb on + strand at 149.841 kb on + strand at 149.841 kb on + strand at 149.841 kb on + strand at 149.841 kb on + strand at 149.842 kb on - strand at 149.842 kb on - strand at 149.843 kb on + strand at 149.844 kb on - strand at 149.844 kb on - strand at 149.869 kb on + strand at 149.869 kb on + strand at 149.870 kb on - strand at 149.928 kb on + strand at 149.929 kb on - strand at 149.929 kb on - strand at 149.929 kb on - strand at 149.929 kb on - strand at 149.995 kb on - strand at 149.995 kb on - strand at 149.995 kb on - strand at 149.995 kb on - strand at 150.004 kb on + strand at 150.004 kb on + strand at 150.005 kb on - strand at 150.005 kb on - strand at 150.005 kb on - strand at 150.005 kb on - strand at 150.005 kb on - strand at 150.005 kb on - strand at 150.005 kb on - strand at 150.005 kb on - strand at 150.126 kb on + strand at 150.126 kb on + strand at 150.127 kb on - strand at 150.207 kb on + strand at 150.207 kb on + strand at 150.207 kb on + strand at 150.207 kb on + strand at 150.207 kb on + strand at 150.208 kb on - strand at 150.208 kb on - strand at 150.208 kb on - strand at 150.208 kb on - strand at 150.208 kb on - strand at 150.208 kb on - strand at 150.303 kb on + strand, within ABIE53_000144 at 150.303 kb on + strand, within ABIE53_000144 at 150.304 kb on - strand, within ABIE53_000144 at 150.304 kb on - strand, within ABIE53_000144 at 150.304 kb on - strand, within ABIE53_000144 at 150.304 kb on - strand, within ABIE53_000144 at 150.304 kb on - strand, within ABIE53_000144 at 150.304 kb on - strand, within ABIE53_000144 at 150.304 kb on - strand, within ABIE53_000144 at 150.315 kb on + strand, within ABIE53_000144 at 150.315 kb on + strand, within ABIE53_000144 at 150.315 kb on + strand, within ABIE53_000144 at 150.315 kb on + strand, within ABIE53_000144 at 150.316 kb on - strand, within ABIE53_000144 at 150.316 kb on - strand, within ABIE53_000144 at 150.316 kb on - strand, within ABIE53_000144 at 150.316 kb on - strand, within ABIE53_000144 at 150.317 kb on + strand, within ABIE53_000144 at 150.317 kb on + strand, within ABIE53_000144 at 150.317 kb on + strand, within ABIE53_000144 at 150.317 kb on + strand, within ABIE53_000144 at 150.317 kb on + strand, within ABIE53_000144 at 150.317 kb on + strand, within ABIE53_000144 at 150.317 kb on + strand, within ABIE53_000144 at 150.318 kb on - strand, within ABIE53_000144 at 150.318 kb on - strand, within ABIE53_000144 at 150.318 kb on - strand, within ABIE53_000144 at 150.318 kb on - strand, within ABIE53_000144 at 150.346 kb on + strand, within ABIE53_000144 at 150.346 kb on + strand, within ABIE53_000144 at 150.347 kb on - strand, within ABIE53_000144 at 150.410 kb on + strand, within ABIE53_000144 at 150.410 kb on + strand, within ABIE53_000144 at 150.411 kb on - strand, within ABIE53_000144 at 150.411 kb on - strand, within ABIE53_000144 at 150.411 kb on - strand, within ABIE53_000144 at 150.411 kb on - strand, within ABIE53_000144
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 147,027 + ABIE53_000141 0.32 +1.5 147,046 + ABIE53_000141 0.33 -2.4 147,046 + ABIE53_000141 0.33 -4.8 147,046 + ABIE53_000141 0.33 -3.1 147,046 + ABIE53_000141 0.33 +0.5 147,046 + ABIE53_000141 0.33 -2.6 147,046 + ABIE53_000141 0.33 -2.4 147,047 - ABIE53_000141 0.33 -0.1 147,047 - ABIE53_000141 0.33 -1.7 147,047 - ABIE53_000141 0.33 -0.1 147,047 - ABIE53_000141 0.33 +1.5 147,047 - ABIE53_000141 0.33 -3.6 147,047 - ABIE53_000141 0.33 -1.5 147,047 - ABIE53_000141 0.33 -2.8 147,047 - ABIE53_000141 0.33 -0.1 147,047 - ABIE53_000141 0.33 +0.5 147,081 + ABIE53_000141 0.36 -0.9 147,436 + ABIE53_000141 0.66 -3.4 147,436 + ABIE53_000141 0.66 -1.5 147,437 - ABIE53_000141 0.67 -2.4 147,437 - ABIE53_000141 0.67 -0.5 147,437 - ABIE53_000141 0.67 +0.5 147,437 - ABIE53_000141 0.67 -0.1 147,437 - ABIE53_000141 0.67 -2.0 147,437 - ABIE53_000141 0.67 -1.3 147,605 + ABIE53_000141 0.81 -4.3 147,605 + ABIE53_000141 0.81 -0.1 147,605 + ABIE53_000141 0.81 -1.3 147,605 + ABIE53_000141 0.81 -0.9 147,605 + ABIE53_000141 0.81 -2.2 147,605 + ABIE53_000141 0.81 -3.2 147,605 + ABIE53_000141 0.81 -3.0 147,605 + ABIE53_000141 0.81 -1.1 147,605 + ABIE53_000141 0.81 -3.6 147,605 + ABIE53_000141 0.81 +1.5 147,605 + ABIE53_000141 0.81 -1.1 147,605 + ABIE53_000141 0.81 -2.2 147,605 + ABIE53_000141 0.81 +1.5 147,606 - ABIE53_000141 0.81 -2.4 147,606 - ABIE53_000141 0.81 -4.0 147,768 + -2.2 147,768 + -1.9 147,768 + +1.5 147,769 - -0.3 147,769 - +0.5 147,769 - +0.3 147,769 - +0.5 147,826 + +0.5 147,826 + +0.3 147,827 - +1.2 147,827 - -0.1 147,829 + -0.5 147,829 + -0.0 147,829 + -1.1 147,829 + -0.1 147,829 + +0.1 147,829 + +0.5 147,829 + +1.5 147,829 + -1.1 147,830 - -3.9 147,830 - -0.7 147,830 - -0.1 147,830 - -2.6 147,830 - -1.9 147,830 - -4.1 147,830 - +2.0 147,882 + +0.4 147,883 - -0.5 147,925 + +0.8 147,934 + +1.5 147,934 + +0.8 147,934 + -2.9 147,935 - -2.8 148,117 + -0.5 148,266 - ABIE53_000142 0.20 -2.4 148,271 + ABIE53_000142 0.20 -2.0 148,338 + ABIE53_000142 0.24 -1.7 148,338 + ABIE53_000142 0.24 -3.2 148,338 + ABIE53_000142 0.24 -0.5 148,339 - ABIE53_000142 0.24 -4.5 148,339 - ABIE53_000142 0.24 -1.5 148,339 - ABIE53_000142 0.24 +0.1 148,535 + ABIE53_000142 0.37 -1.5 148,535 + ABIE53_000142 0.37 -1.3 148,535 + ABIE53_000142 0.37 -1.7 148,607 + ABIE53_000142 0.42 -3.3 148,608 - ABIE53_000142 0.42 -3.1 148,608 - ABIE53_000142 0.42 +0.5 148,608 - ABIE53_000142 0.42 -2.2 148,608 - ABIE53_000142 0.42 -1.2 148,941 + ABIE53_000142 0.64 -1.8 148,941 + ABIE53_000142 0.64 -1.1 148,941 + ABIE53_000142 0.64 -1.5 148,941 + ABIE53_000142 0.64 -2.7 148,942 - ABIE53_000142 0.64 -4.0 148,980 + ABIE53_000142 0.66 -2.6 148,981 - ABIE53_000142 0.66 -0.9 149,114 + ABIE53_000142 0.75 -0.1 149,236 + ABIE53_000142 0.83 -0.9 149,349 + +0.2 149,349 + -2.4 149,349 + -3.2 149,350 - -1.9 149,350 - +1.5 149,350 - -3.1 149,350 - -0.8 149,350 - -1.9 149,373 + +1.5 149,374 - -1.5 149,374 - -0.1 149,434 - +0.5 149,490 + -1.3 149,490 + -0.1 149,490 + -0.1 149,490 + -0.5 149,490 + -0.5 149,490 + +0.5 149,490 + +1.0 149,491 - -2.5 149,491 - -0.1 149,491 - +1.5 149,491 - -1.5 149,491 - -3.3 149,491 - +3.0 149,786 + -2.5 149,786 + +0.5 149,787 - -0.5 149,787 - +0.5 149,807 + +2.2 149,807 + +1.3 149,841 + -0.5 149,841 + +0.4 149,841 + +0.7 149,841 + +3.1 149,842 - +0.1 149,842 - +0.9 149,843 + +0.6 149,844 - +3.0 149,844 - -0.5 149,869 + -0.9 149,869 + -2.3 149,870 - +1.0 149,928 + +3.8 149,929 - -0.5 149,929 - -2.4 149,929 - -0.9 149,929 - +1.5 149,995 - -1.5 149,995 - -0.7 149,995 - +0.1 149,995 - -0.1 150,004 + -2.0 150,004 + -1.7 150,005 - -0.7 150,005 - -2.6 150,005 - -2.9 150,005 - -0.1 150,005 - -2.0 150,005 - -0.9 150,005 - -0.1 150,005 - +1.5 150,126 + -0.7 150,126 + -0.9 150,127 - -1.9 150,207 + -0.0 150,207 + -0.1 150,207 + +2.1 150,207 + +0.0 150,207 + -0.9 150,208 - +0.5 150,208 - -2.1 150,208 - +0.7 150,208 - +0.2 150,208 - +1.5 150,208 - +1.9 150,303 + ABIE53_000144 0.12 -0.5 150,303 + ABIE53_000144 0.12 -0.2 150,304 - ABIE53_000144 0.12 -0.1 150,304 - ABIE53_000144 0.12 -0.1 150,304 - ABIE53_000144 0.12 -2.2 150,304 - ABIE53_000144 0.12 +0.5 150,304 - ABIE53_000144 0.12 -0.1 150,304 - ABIE53_000144 0.12 -0.5 150,304 - ABIE53_000144 0.12 -0.9 150,315 + ABIE53_000144 0.12 -1.3 150,315 + ABIE53_000144 0.12 +1.6 150,315 + ABIE53_000144 0.12 -2.2 150,315 + ABIE53_000144 0.12 -0.9 150,316 - ABIE53_000144 0.12 +1.7 150,316 - ABIE53_000144 0.12 +0.7 150,316 - ABIE53_000144 0.12 +1.6 150,316 - ABIE53_000144 0.12 -1.3 150,317 + ABIE53_000144 0.12 -1.1 150,317 + ABIE53_000144 0.12 +0.5 150,317 + ABIE53_000144 0.12 +0.5 150,317 + ABIE53_000144 0.12 +1.5 150,317 + ABIE53_000144 0.12 -1.1 150,317 + ABIE53_000144 0.12 -1.1 150,317 + ABIE53_000144 0.12 -0.9 150,318 - ABIE53_000144 0.12 -0.3 150,318 - ABIE53_000144 0.12 -1.1 150,318 - ABIE53_000144 0.12 -0.1 150,318 - ABIE53_000144 0.12 -1.1 150,346 + ABIE53_000144 0.13 +1.2 150,346 + ABIE53_000144 0.13 +2.6 150,347 - ABIE53_000144 0.13 -0.1 150,410 + ABIE53_000144 0.16 -0.5 150,410 + ABIE53_000144 0.16 +0.5 150,411 - ABIE53_000144 0.16 -0.6 150,411 - ABIE53_000144 0.16 +0.4 150,411 - ABIE53_000144 0.16 -2.2 150,411 - ABIE53_000144 0.16 -0.1
Or see this region's nucleotide sequence