Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2930

Experiment: MoYLS4 with Nitrite 0.025mg/mL + Zinc Sulfate 0.1mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrpoC and DVU2930 are separated by 708 nucleotidesDVU2930 and DVU2931 are separated by 13 nucleotides DVU2929: rpoC - DNA-directed RNA polymerase, beta prime subunit (TIGR), at 3,028,905 to 3,033,062 rpoC DVU2930: DVU2930 - hypothetical protein (TIGR), at 3,033,771 to 3,034,211 DVU2930 DVU2931: DVU2931 - sensory box histidine kinase (TIGR), at 3,034,225 to 3,036,426 DVU2931 Position (kb) 3033 3034 3035Strain fitness (log2 ratio) -1 0 1at 3033.073 kb on - strandat 3033.350 kb on + strandat 3033.528 kb on - strandat 3033.534 kb on + strandat 3033.613 kb on - strandat 3033.837 kb on + strand, within DVU2930at 3034.322 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nitrite 0.025mg/mL + Zinc Sulfate 0.1mM
remove
3,033,073 - -0.2
3,033,350 + -0.9
3,033,528 - +0.5
3,033,534 + +0.1
3,033,613 - +0.4
3,033,837 + DVU2930 0.15 +1.4
3,034,322 + -0.9

Or see this region's nucleotide sequence