Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.921.1

Experiment: PBS control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.919.1 and Xcc-8004.921.1 overlap by 23 nucleotidesXcc-8004.921.1 and Xcc-8004.922.1 overlap by 8 nucleotides Xcc-8004.919.1: Xcc-8004.919.1 - Nicotinamide phosphoribosyltransferase (EC 2.4.2.12), at 863,390 to 864,796 Xcc-8004.919.1 Xcc-8004.921.1: Xcc-8004.921.1 - FIG01210236: hypothetical protein, at 864,774 to 865,919 Xcc-8004.921.1 Xcc-8004.922.1: Xcc-8004.922.1 - FIG01210252: hypothetical protein, at 865,912 to 866,976 Xcc-8004.922.1 Position (kb) 864 865 866Strain fitness (log2 ratio) -2 -1 0 1 2at 863.778 kb on - strand, within Xcc-8004.919.1at 863.999 kb on - strand, within Xcc-8004.919.1at 864.032 kb on + strand, within Xcc-8004.919.1at 864.033 kb on - strand, within Xcc-8004.919.1at 864.033 kb on - strand, within Xcc-8004.919.1at 864.119 kb on + strand, within Xcc-8004.919.1at 864.119 kb on + strand, within Xcc-8004.919.1at 864.120 kb on - strand, within Xcc-8004.919.1at 864.182 kb on + strand, within Xcc-8004.919.1at 864.182 kb on + strand, within Xcc-8004.919.1at 864.182 kb on + strand, within Xcc-8004.919.1at 864.183 kb on - strand, within Xcc-8004.919.1at 864.183 kb on - strand, within Xcc-8004.919.1at 864.183 kb on - strand, within Xcc-8004.919.1at 864.183 kb on - strand, within Xcc-8004.919.1at 864.183 kb on - strand, within Xcc-8004.919.1at 864.356 kb on + strand, within Xcc-8004.919.1at 864.356 kb on + strand, within Xcc-8004.919.1at 864.357 kb on - strand, within Xcc-8004.919.1at 864.357 kb on - strand, within Xcc-8004.919.1at 864.450 kb on - strand, within Xcc-8004.919.1at 864.572 kb on + strand, within Xcc-8004.919.1at 864.572 kb on + strand, within Xcc-8004.919.1at 864.572 kb on + strand, within Xcc-8004.919.1at 864.572 kb on + strand, within Xcc-8004.919.1at 864.573 kb on - strand, within Xcc-8004.919.1at 864.573 kb on - strand, within Xcc-8004.919.1at 864.666 kb on + strandat 864.667 kb on - strandat 864.800 kb on - strandat 864.800 kb on - strandat 864.800 kb on - strandat 864.800 kb on - strandat 864.999 kb on + strand, within Xcc-8004.921.1at 865.104 kb on + strand, within Xcc-8004.921.1at 865.105 kb on - strand, within Xcc-8004.921.1at 865.266 kb on + strand, within Xcc-8004.921.1at 865.267 kb on - strand, within Xcc-8004.921.1at 865.267 kb on - strand, within Xcc-8004.921.1at 865.267 kb on - strand, within Xcc-8004.921.1at 865.534 kb on - strand, within Xcc-8004.921.1at 865.619 kb on + strand, within Xcc-8004.921.1at 865.629 kb on + strand, within Xcc-8004.921.1at 865.629 kb on + strand, within Xcc-8004.921.1at 865.630 kb on - strand, within Xcc-8004.921.1at 865.630 kb on - strand, within Xcc-8004.921.1at 865.630 kb on - strand, within Xcc-8004.921.1at 865.728 kb on + strand, within Xcc-8004.921.1at 865.728 kb on + strand, within Xcc-8004.921.1at 865.729 kb on - strand, within Xcc-8004.921.1at 865.731 kb on + strand, within Xcc-8004.921.1at 865.731 kb on + strand, within Xcc-8004.921.1at 865.731 kb on + strand, within Xcc-8004.921.1at 865.732 kb on - strand, within Xcc-8004.921.1at 865.732 kb on - strand, within Xcc-8004.921.1at 865.732 kb on - strand, within Xcc-8004.921.1at 865.795 kb on - strand, within Xcc-8004.921.1at 865.833 kb on + strandat 865.833 kb on + strandat 865.833 kb on + strandat 865.833 kb on + strandat 865.833 kb on + strandat 865.833 kb on + strandat 865.833 kb on + strandat 865.834 kb on - strandat 865.834 kb on - strandat 866.174 kb on + strand, within Xcc-8004.922.1at 866.175 kb on - strand, within Xcc-8004.922.1at 866.175 kb on - strand, within Xcc-8004.922.1at 866.287 kb on + strand, within Xcc-8004.922.1at 866.287 kb on + strand, within Xcc-8004.922.1at 866.287 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.332 kb on + strand, within Xcc-8004.922.1at 866.332 kb on + strand, within Xcc-8004.922.1at 866.332 kb on + strand, within Xcc-8004.922.1at 866.332 kb on + strand, within Xcc-8004.922.1at 866.332 kb on + strand, within Xcc-8004.922.1at 866.332 kb on + strand, within Xcc-8004.922.1at 866.332 kb on + strand, within Xcc-8004.922.1at 866.333 kb on - strand, within Xcc-8004.922.1at 866.333 kb on - strand, within Xcc-8004.922.1at 866.333 kb on - strand, within Xcc-8004.922.1at 866.333 kb on - strand, within Xcc-8004.922.1at 866.333 kb on - strand, within Xcc-8004.922.1at 866.347 kb on + strand, within Xcc-8004.922.1at 866.356 kb on + strand, within Xcc-8004.922.1at 866.356 kb on + strand, within Xcc-8004.922.1at 866.356 kb on + strand, within Xcc-8004.922.1at 866.356 kb on + strand, within Xcc-8004.922.1at 866.357 kb on - strand, within Xcc-8004.922.1at 866.357 kb on - strand, within Xcc-8004.922.1at 866.357 kb on - strand, within Xcc-8004.922.1at 866.357 kb on - strand, within Xcc-8004.922.1at 866.444 kb on + strand, within Xcc-8004.922.1at 866.459 kb on + strand, within Xcc-8004.922.1at 866.459 kb on + strand, within Xcc-8004.922.1at 866.459 kb on + strand, within Xcc-8004.922.1at 866.459 kb on + strand, within Xcc-8004.922.1at 866.459 kb on + strand, within Xcc-8004.922.1at 866.460 kb on - strand, within Xcc-8004.922.1at 866.460 kb on - strand, within Xcc-8004.922.1at 866.460 kb on - strand, within Xcc-8004.922.1at 866.460 kb on - strand, within Xcc-8004.922.1at 866.533 kb on + strand, within Xcc-8004.922.1at 866.593 kb on + strand, within Xcc-8004.922.1at 866.593 kb on + strand, within Xcc-8004.922.1at 866.593 kb on + strand, within Xcc-8004.922.1at 866.594 kb on - strand, within Xcc-8004.922.1at 866.594 kb on - strand, within Xcc-8004.922.1at 866.594 kb on - strand, within Xcc-8004.922.1at 866.594 kb on - strand, within Xcc-8004.922.1at 866.701 kb on + strand, within Xcc-8004.922.1at 866.701 kb on + strand, within Xcc-8004.922.1at 866.701 kb on + strand, within Xcc-8004.922.1at 866.702 kb on - strand, within Xcc-8004.922.1at 866.702 kb on - strand, within Xcc-8004.922.1at 866.702 kb on - strand, within Xcc-8004.922.1at 866.702 kb on - strand, within Xcc-8004.922.1at 866.702 kb on - strand, within Xcc-8004.922.1at 866.890 kb on + strandat 866.890 kb on + strandat 866.890 kb on + strandat 866.890 kb on + strandat 866.890 kb on + strandat 866.890 kb on + strandat 866.891 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PBS control
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863,778 - Xcc-8004.919.1 0.28 -0.5
863,999 - Xcc-8004.919.1 0.43 +0.5
864,032 + Xcc-8004.919.1 0.46 +0.7
864,033 - Xcc-8004.919.1 0.46 -0.1
864,033 - Xcc-8004.919.1 0.46 +1.0
864,119 + Xcc-8004.919.1 0.52 -1.9
864,119 + Xcc-8004.919.1 0.52 -2.3
864,120 - Xcc-8004.919.1 0.52 -0.2
864,182 + Xcc-8004.919.1 0.56 -0.4
864,182 + Xcc-8004.919.1 0.56 +0.4
864,182 + Xcc-8004.919.1 0.56 +0.4
864,183 - Xcc-8004.919.1 0.56 -0.3
864,183 - Xcc-8004.919.1 0.56 +0.1
864,183 - Xcc-8004.919.1 0.56 +0.5
864,183 - Xcc-8004.919.1 0.56 -0.1
864,183 - Xcc-8004.919.1 0.56 +0.7
864,356 + Xcc-8004.919.1 0.69 +1.5
864,356 + Xcc-8004.919.1 0.69 +0.1
864,357 - Xcc-8004.919.1 0.69 +1.5
864,357 - Xcc-8004.919.1 0.69 -1.7
864,450 - Xcc-8004.919.1 0.75 -2.4
864,572 + Xcc-8004.919.1 0.84 -1.1
864,572 + Xcc-8004.919.1 0.84 +0.5
864,572 + Xcc-8004.919.1 0.84 +1.2
864,572 + Xcc-8004.919.1 0.84 +2.2
864,573 - Xcc-8004.919.1 0.84 -2.4
864,573 - Xcc-8004.919.1 0.84 -0.1
864,666 + +0.3
864,667 - -2.1
864,800 - +0.3
864,800 - -1.3
864,800 - -0.2
864,800 - +0.3
864,999 + Xcc-8004.921.1 0.20 -0.7
865,104 + Xcc-8004.921.1 0.29 -0.3
865,105 - Xcc-8004.921.1 0.29 -0.8
865,266 + Xcc-8004.921.1 0.43 -0.8
865,267 - Xcc-8004.921.1 0.43 +0.2
865,267 - Xcc-8004.921.1 0.43 -2.1
865,267 - Xcc-8004.921.1 0.43 -0.9
865,534 - Xcc-8004.921.1 0.66 +1.9
865,619 + Xcc-8004.921.1 0.74 -2.4
865,629 + Xcc-8004.921.1 0.75 -0.2
865,629 + Xcc-8004.921.1 0.75 -0.9
865,630 - Xcc-8004.921.1 0.75 -0.3
865,630 - Xcc-8004.921.1 0.75 -0.2
865,630 - Xcc-8004.921.1 0.75 -0.4
865,728 + Xcc-8004.921.1 0.83 -0.5
865,728 + Xcc-8004.921.1 0.83 -0.4
865,729 - Xcc-8004.921.1 0.83 -2.3
865,731 + Xcc-8004.921.1 0.84 -0.1
865,731 + Xcc-8004.921.1 0.84 -1.0
865,731 + Xcc-8004.921.1 0.84 -0.9
865,732 - Xcc-8004.921.1 0.84 +2.5
865,732 - Xcc-8004.921.1 0.84 -0.3
865,732 - Xcc-8004.921.1 0.84 -0.2
865,795 - Xcc-8004.921.1 0.89 -1.2
865,833 + -1.6
865,833 + +0.8
865,833 + +0.7
865,833 + -0.6
865,833 + -0.5
865,833 + -0.9
865,833 + +0.1
865,834 - -0.3
865,834 - +0.7
866,174 + Xcc-8004.922.1 0.25 -0.9
866,175 - Xcc-8004.922.1 0.25 -0.1
866,175 - Xcc-8004.922.1 0.25 +0.9
866,287 + Xcc-8004.922.1 0.35 -0.3
866,287 + Xcc-8004.922.1 0.35 +0.3
866,287 + Xcc-8004.922.1 0.35 -0.3
866,330 + Xcc-8004.922.1 0.39 +0.2
866,330 + Xcc-8004.922.1 0.39 +0.8
866,330 + Xcc-8004.922.1 0.39 -0.7
866,330 + Xcc-8004.922.1 0.39 -0.8
866,330 + Xcc-8004.922.1 0.39 -0.2
866,330 + Xcc-8004.922.1 0.39 -0.3
866,330 + Xcc-8004.922.1 0.39 -0.3
866,330 + Xcc-8004.922.1 0.39 -0.0
866,330 + Xcc-8004.922.1 0.39 -1.0
866,330 + Xcc-8004.922.1 0.39 -2.3
866,330 + Xcc-8004.922.1 0.39 +0.3
866,330 + Xcc-8004.922.1 0.39 -0.4
866,330 + Xcc-8004.922.1 0.39 -0.9
866,331 - Xcc-8004.922.1 0.39 -0.2
866,331 - Xcc-8004.922.1 0.39 -0.2
866,331 - Xcc-8004.922.1 0.39 -0.5
866,331 - Xcc-8004.922.1 0.39 +0.7
866,331 - Xcc-8004.922.1 0.39 -0.4
866,331 - Xcc-8004.922.1 0.39 -0.1
866,331 - Xcc-8004.922.1 0.39 +0.1
866,331 - Xcc-8004.922.1 0.39 -0.4
866,331 - Xcc-8004.922.1 0.39 -0.6
866,331 - Xcc-8004.922.1 0.39 -0.0
866,331 - Xcc-8004.922.1 0.39 -0.4
866,331 - Xcc-8004.922.1 0.39 -1.4
866,331 - Xcc-8004.922.1 0.39 +0.0
866,331 - Xcc-8004.922.1 0.39 -1.1
866,332 + Xcc-8004.922.1 0.39 +1.2
866,332 + Xcc-8004.922.1 0.39 +0.6
866,332 + Xcc-8004.922.1 0.39 -0.6
866,332 + Xcc-8004.922.1 0.39 +0.2
866,332 + Xcc-8004.922.1 0.39 -0.1
866,332 + Xcc-8004.922.1 0.39 +0.2
866,332 + Xcc-8004.922.1 0.39 -0.7
866,333 - Xcc-8004.922.1 0.40 +0.3
866,333 - Xcc-8004.922.1 0.40 -0.9
866,333 - Xcc-8004.922.1 0.40 -0.6
866,333 - Xcc-8004.922.1 0.40 -0.9
866,333 - Xcc-8004.922.1 0.40 +0.7
866,347 + Xcc-8004.922.1 0.41 -0.0
866,356 + Xcc-8004.922.1 0.42 -0.1
866,356 + Xcc-8004.922.1 0.42 -0.3
866,356 + Xcc-8004.922.1 0.42 -1.2
866,356 + Xcc-8004.922.1 0.42 +0.3
866,357 - Xcc-8004.922.1 0.42 +0.3
866,357 - Xcc-8004.922.1 0.42 -0.9
866,357 - Xcc-8004.922.1 0.42 -0.8
866,357 - Xcc-8004.922.1 0.42 -0.2
866,444 + Xcc-8004.922.1 0.50 -0.2
866,459 + Xcc-8004.922.1 0.51 +0.1
866,459 + Xcc-8004.922.1 0.51 +0.3
866,459 + Xcc-8004.922.1 0.51 -1.3
866,459 + Xcc-8004.922.1 0.51 +0.4
866,459 + Xcc-8004.922.1 0.51 -0.8
866,460 - Xcc-8004.922.1 0.51 -0.9
866,460 - Xcc-8004.922.1 0.51 -0.7
866,460 - Xcc-8004.922.1 0.51 -0.2
866,460 - Xcc-8004.922.1 0.51 -0.4
866,533 + Xcc-8004.922.1 0.58 -1.6
866,593 + Xcc-8004.922.1 0.64 -0.9
866,593 + Xcc-8004.922.1 0.64 +0.5
866,593 + Xcc-8004.922.1 0.64 +1.5
866,594 - Xcc-8004.922.1 0.64 +0.4
866,594 - Xcc-8004.922.1 0.64 -0.4
866,594 - Xcc-8004.922.1 0.64 -2.0
866,594 - Xcc-8004.922.1 0.64 -0.9
866,701 + Xcc-8004.922.1 0.74 -1.2
866,701 + Xcc-8004.922.1 0.74 +0.4
866,701 + Xcc-8004.922.1 0.74 +0.3
866,702 - Xcc-8004.922.1 0.74 +0.6
866,702 - Xcc-8004.922.1 0.74 +0.7
866,702 - Xcc-8004.922.1 0.74 +0.3
866,702 - Xcc-8004.922.1 0.74 -0.8
866,702 - Xcc-8004.922.1 0.74 -0.7
866,890 + -1.0
866,890 + -0.7
866,890 + +0.5
866,890 + +1.1
866,890 + -0.7
866,890 + +0.7
866,891 - +0.4

Or see this region's nucleotide sequence