Experiment: PBS control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.775.1 and Xcc-8004.776.1 are separated by 108 nucleotides Xcc-8004.776.1 and Xcc-8004.777.1 overlap by 4 nucleotides
Xcc-8004.775.1: Xcc-8004.775.1 - IroE protein, at 720,227 to 721,207
Xcc-8004.775.1
Xcc-8004.776.1: Xcc-8004.776.1 - Fatty acid desaturase, at 721,316 to 722,242
Xcc-8004.776.1
Xcc-8004.777.1: Xcc-8004.777.1 - FIG01211805: hypothetical protein, at 722,239 to 723,387
Xcc-8004.777.1
Position (kb) 721
722
723 Strain fitness (log2 ratio) -2
-1
0
1
2 at 720.454 kb on - strand, within Xcc-8004.775.1 at 720.475 kb on + strand, within Xcc-8004.775.1 at 720.476 kb on - strand, within Xcc-8004.775.1 at 720.531 kb on + strand, within Xcc-8004.775.1 at 720.553 kb on - strand, within Xcc-8004.775.1 at 720.627 kb on - strand, within Xcc-8004.775.1 at 720.658 kb on + strand, within Xcc-8004.775.1 at 720.691 kb on - strand, within Xcc-8004.775.1 at 720.699 kb on + strand, within Xcc-8004.775.1 at 720.699 kb on + strand, within Xcc-8004.775.1 at 720.713 kb on - strand, within Xcc-8004.775.1 at 720.766 kb on - strand, within Xcc-8004.775.1 at 720.808 kb on - strand, within Xcc-8004.775.1 at 720.912 kb on + strand, within Xcc-8004.775.1 at 720.949 kb on - strand, within Xcc-8004.775.1 at 720.979 kb on - strand, within Xcc-8004.775.1 at 720.979 kb on - strand, within Xcc-8004.775.1 at 720.979 kb on - strand, within Xcc-8004.775.1 at 721.035 kb on + strand, within Xcc-8004.775.1 at 721.444 kb on - strand, within Xcc-8004.776.1 at 721.482 kb on + strand, within Xcc-8004.776.1 at 721.643 kb on + strand, within Xcc-8004.776.1 at 721.654 kb on - strand, within Xcc-8004.776.1 at 721.812 kb on - strand, within Xcc-8004.776.1 at 721.816 kb on - strand, within Xcc-8004.776.1 at 722.014 kb on + strand, within Xcc-8004.776.1 at 722.014 kb on + strand, within Xcc-8004.776.1 at 722.015 kb on - strand, within Xcc-8004.776.1 at 722.015 kb on - strand, within Xcc-8004.776.1 at 722.113 kb on - strand, within Xcc-8004.776.1 at 722.113 kb on - strand, within Xcc-8004.776.1 at 722.657 kb on + strand, within Xcc-8004.777.1 at 722.705 kb on - strand, within Xcc-8004.777.1 at 722.754 kb on - strand, within Xcc-8004.777.1 at 722.987 kb on + strand, within Xcc-8004.777.1 at 722.987 kb on + strand, within Xcc-8004.777.1 at 722.988 kb on - strand, within Xcc-8004.777.1 at 722.988 kb on - strand, within Xcc-8004.777.1 at 723.137 kb on + strand, within Xcc-8004.777.1 at 723.203 kb on + strand, within Xcc-8004.777.1
Per-strain Table
Position Strand Gene LocusTag Fraction PBS control remove 720,454 - Xcc-8004.775.1 0.23 -1.0 720,475 + Xcc-8004.775.1 0.25 +0.3 720,476 - Xcc-8004.775.1 0.25 +0.5 720,531 + Xcc-8004.775.1 0.31 +0.3 720,553 - Xcc-8004.775.1 0.33 -0.5 720,627 - Xcc-8004.775.1 0.41 +2.3 720,658 + Xcc-8004.775.1 0.44 +0.7 720,691 - Xcc-8004.775.1 0.47 +0.4 720,699 + Xcc-8004.775.1 0.48 -0.4 720,699 + Xcc-8004.775.1 0.48 +0.2 720,713 - Xcc-8004.775.1 0.50 -0.3 720,766 - Xcc-8004.775.1 0.55 -1.3 720,808 - Xcc-8004.775.1 0.59 +0.1 720,912 + Xcc-8004.775.1 0.70 +0.4 720,949 - Xcc-8004.775.1 0.74 -0.1 720,979 - Xcc-8004.775.1 0.77 -0.5 720,979 - Xcc-8004.775.1 0.77 -1.9 720,979 - Xcc-8004.775.1 0.77 +0.0 721,035 + Xcc-8004.775.1 0.82 +0.2 721,444 - Xcc-8004.776.1 0.14 +0.4 721,482 + Xcc-8004.776.1 0.18 -0.9 721,643 + Xcc-8004.776.1 0.35 -0.4 721,654 - Xcc-8004.776.1 0.36 -1.6 721,812 - Xcc-8004.776.1 0.54 +1.0 721,816 - Xcc-8004.776.1 0.54 -1.1 722,014 + Xcc-8004.776.1 0.75 -0.9 722,014 + Xcc-8004.776.1 0.75 -0.9 722,015 - Xcc-8004.776.1 0.75 -0.5 722,015 - Xcc-8004.776.1 0.75 -0.1 722,113 - Xcc-8004.776.1 0.86 -0.5 722,113 - Xcc-8004.776.1 0.86 -2.6 722,657 + Xcc-8004.777.1 0.36 -1.2 722,705 - Xcc-8004.777.1 0.41 +0.4 722,754 - Xcc-8004.777.1 0.45 +0.1 722,987 + Xcc-8004.777.1 0.65 -0.4 722,987 + Xcc-8004.777.1 0.65 -0.5 722,988 - Xcc-8004.777.1 0.65 -1.6 722,988 - Xcc-8004.777.1 0.65 +0.2 723,137 + Xcc-8004.777.1 0.78 +0.4 723,203 + Xcc-8004.777.1 0.84 +0.4
Or see this region's nucleotide sequence