Experiment: PBS control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.731.1 and Xcc-8004.732.1 are separated by 428 nucleotides Xcc-8004.732.1 and Xcc-8004.733.1 are separated by 113 nucleotides Xcc-8004.733.1 and Xcc-8004.734.1 are separated by 197 nucleotides
Xcc-8004.731.1: Xcc-8004.731.1 - hypothetical protein, at 681,320 to 682,042
Xcc-8004.731.1
Xcc-8004.732.1: Xcc-8004.732.1 - iron-chelator utilization protein, at 682,471 to 683,259
Xcc-8004.732.1
Xcc-8004.733.1: Xcc-8004.733.1 - Transcriptional regulator, PadR family, at 683,373 to 683,906
Xcc-8004.733.1
Xcc-8004.734.1: Xcc-8004.734.1 - Malonate decarboxylase alpha subunit, at 684,104 to 685,750
Xcc-8004.734.1
Position (kb) 682
683
684 Strain fitness (log2 ratio) -2
-1
0
1 at 681.518 kb on + strand, within Xcc-8004.731.1 at 681.518 kb on + strand, within Xcc-8004.731.1 at 681.519 kb on - strand, within Xcc-8004.731.1 at 681.519 kb on - strand, within Xcc-8004.731.1 at 681.620 kb on + strand, within Xcc-8004.731.1 at 681.620 kb on + strand, within Xcc-8004.731.1 at 681.620 kb on + strand, within Xcc-8004.731.1 at 681.621 kb on - strand, within Xcc-8004.731.1 at 681.621 kb on - strand, within Xcc-8004.731.1 at 682.041 kb on - strand at 682.166 kb on + strand at 682.167 kb on - strand at 682.167 kb on - strand at 682.167 kb on - strand at 682.186 kb on - strand at 682.253 kb on + strand at 682.253 kb on + strand at 682.254 kb on - strand at 682.264 kb on + strand at 682.264 kb on + strand at 682.265 kb on - strand at 682.332 kb on + strand at 682.389 kb on + strand at 682.401 kb on - strand at 682.452 kb on + strand at 682.499 kb on + strand at 682.595 kb on + strand, within Xcc-8004.732.1 at 682.596 kb on - strand, within Xcc-8004.732.1 at 682.688 kb on + strand, within Xcc-8004.732.1 at 682.689 kb on - strand, within Xcc-8004.732.1 at 682.751 kb on + strand, within Xcc-8004.732.1 at 682.835 kb on + strand, within Xcc-8004.732.1 at 682.835 kb on + strand, within Xcc-8004.732.1 at 682.835 kb on + strand, within Xcc-8004.732.1 at 682.836 kb on - strand, within Xcc-8004.732.1 at 682.836 kb on - strand, within Xcc-8004.732.1 at 682.836 kb on - strand, within Xcc-8004.732.1 at 682.988 kb on + strand, within Xcc-8004.732.1 at 682.989 kb on - strand, within Xcc-8004.732.1 at 683.000 kb on + strand, within Xcc-8004.732.1 at 683.200 kb on + strand at 683.201 kb on - strand at 683.201 kb on - strand at 683.201 kb on - strand at 683.201 kb on - strand at 683.207 kb on - strand at 683.241 kb on + strand at 683.353 kb on + strand at 683.354 kb on - strand at 683.354 kb on - strand at 683.714 kb on + strand, within Xcc-8004.733.1 at 683.714 kb on + strand, within Xcc-8004.733.1 at 683.715 kb on - strand, within Xcc-8004.733.1 at 683.715 kb on - strand, within Xcc-8004.733.1 at 683.715 kb on - strand, within Xcc-8004.733.1 at 683.715 kb on - strand, within Xcc-8004.733.1 at 683.717 kb on - strand, within Xcc-8004.733.1 at 683.717 kb on - strand, within Xcc-8004.733.1 at 683.717 kb on - strand, within Xcc-8004.733.1 at 683.717 kb on - strand, within Xcc-8004.733.1 at 683.717 kb on - strand, within Xcc-8004.733.1 at 683.756 kb on - strand, within Xcc-8004.733.1 at 683.758 kb on + strand, within Xcc-8004.733.1 at 683.759 kb on - strand, within Xcc-8004.733.1 at 683.759 kb on - strand, within Xcc-8004.733.1 at 683.759 kb on - strand, within Xcc-8004.733.1 at 683.934 kb on - strand at 683.934 kb on - strand at 683.936 kb on - strand at 684.031 kb on - strand at 684.099 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PBS control remove 681,518 + Xcc-8004.731.1 0.27 -1.2 681,518 + Xcc-8004.731.1 0.27 +0.5 681,519 - Xcc-8004.731.1 0.28 -0.5 681,519 - Xcc-8004.731.1 0.28 -2.7 681,620 + Xcc-8004.731.1 0.41 -0.9 681,620 + Xcc-8004.731.1 0.41 +0.8 681,620 + Xcc-8004.731.1 0.41 -0.9 681,621 - Xcc-8004.731.1 0.42 +0.5 681,621 - Xcc-8004.731.1 0.42 +1.3 682,041 - +0.1 682,166 + -0.4 682,167 - +1.3 682,167 - +1.3 682,167 - +0.9 682,186 - +0.2 682,253 + +0.6 682,253 + +1.1 682,254 - -0.3 682,264 + +1.0 682,264 + -1.3 682,265 - -0.2 682,332 + -1.6 682,389 + -0.3 682,401 - +0.3 682,452 + -1.0 682,499 + +0.1 682,595 + Xcc-8004.732.1 0.16 +0.7 682,596 - Xcc-8004.732.1 0.16 -1.7 682,688 + Xcc-8004.732.1 0.28 -0.9 682,689 - Xcc-8004.732.1 0.28 -1.9 682,751 + Xcc-8004.732.1 0.35 +1.3 682,835 + Xcc-8004.732.1 0.46 -0.2 682,835 + Xcc-8004.732.1 0.46 -0.9 682,835 + Xcc-8004.732.1 0.46 -0.9 682,836 - Xcc-8004.732.1 0.46 -0.1 682,836 - Xcc-8004.732.1 0.46 -0.4 682,836 - Xcc-8004.732.1 0.46 -1.3 682,988 + Xcc-8004.732.1 0.66 -0.7 682,989 - Xcc-8004.732.1 0.66 -0.0 683,000 + Xcc-8004.732.1 0.67 -0.5 683,200 + -0.7 683,201 - +0.5 683,201 - -0.6 683,201 - +0.6 683,201 - -0.6 683,207 - -0.3 683,241 + +1.3 683,353 + -0.3 683,354 - +0.1 683,354 - -1.3 683,714 + Xcc-8004.733.1 0.64 +1.3 683,714 + Xcc-8004.733.1 0.64 +1.7 683,715 - Xcc-8004.733.1 0.64 -2.0 683,715 - Xcc-8004.733.1 0.64 -0.1 683,715 - Xcc-8004.733.1 0.64 -0.1 683,715 - Xcc-8004.733.1 0.64 -1.1 683,717 - Xcc-8004.733.1 0.64 +1.0 683,717 - Xcc-8004.733.1 0.64 +0.1 683,717 - Xcc-8004.733.1 0.64 -0.3 683,717 - Xcc-8004.733.1 0.64 -0.0 683,717 - Xcc-8004.733.1 0.64 -0.6 683,756 - Xcc-8004.733.1 0.72 -0.7 683,758 + Xcc-8004.733.1 0.72 +0.9 683,759 - Xcc-8004.733.1 0.72 +0.2 683,759 - Xcc-8004.733.1 0.72 -0.7 683,759 - Xcc-8004.733.1 0.72 +0.7 683,934 - -1.6 683,934 - +0.1 683,936 - -0.8 684,031 - -0.3 684,099 - +0.9
Or see this region's nucleotide sequence