Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.602.1

Experiment: PBS control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.601.1 and Xcc-8004.602.1 are separated by 335 nucleotidesXcc-8004.602.1 and Xcc-8004.603.1 are separated by 40 nucleotidesXcc-8004.603.1 and Xcc-8004.604.1 are separated by 167 nucleotides Xcc-8004.601.1: Xcc-8004.601.1 - Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6), at 553,966 to 554,892 Xcc-8004.601.1 Xcc-8004.602.1: Xcc-8004.602.1 - DnaJ related chaperone, at 555,228 to 555,557 Xcc-8004.602.1 Xcc-8004.603.1: Xcc-8004.603.1 - hypothetical protein, at 555,598 to 555,804 Xcc-8004.603.1 Xcc-8004.604.1: Xcc-8004.604.1 - membrane protein, putative, at 555,972 to 556,811 Xcc-8004.604.1 Position (kb) 555 556Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 554.288 kb on + strand, within Xcc-8004.601.1at 554.288 kb on + strand, within Xcc-8004.601.1at 554.289 kb on - strand, within Xcc-8004.601.1at 554.289 kb on - strand, within Xcc-8004.601.1at 554.289 kb on - strand, within Xcc-8004.601.1at 554.406 kb on + strand, within Xcc-8004.601.1at 554.407 kb on - strand, within Xcc-8004.601.1at 554.422 kb on + strand, within Xcc-8004.601.1at 554.456 kb on + strand, within Xcc-8004.601.1at 554.486 kb on + strand, within Xcc-8004.601.1at 554.487 kb on - strand, within Xcc-8004.601.1at 554.487 kb on - strand, within Xcc-8004.601.1at 554.513 kb on + strand, within Xcc-8004.601.1at 554.771 kb on + strand, within Xcc-8004.601.1at 554.771 kb on + strand, within Xcc-8004.601.1at 554.772 kb on - strand, within Xcc-8004.601.1at 554.902 kb on + strandat 554.902 kb on + strandat 554.902 kb on + strandat 554.902 kb on + strandat 554.903 kb on - strandat 554.903 kb on - strandat 554.903 kb on - strandat 554.903 kb on - strandat 554.967 kb on - strandat 554.971 kb on + strandat 554.971 kb on + strandat 554.971 kb on + strandat 554.971 kb on + strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 555.045 kb on + strandat 555.046 kb on - strandat 555.122 kb on + strandat 555.129 kb on + strandat 555.370 kb on - strand, within Xcc-8004.602.1at 555.444 kb on + strand, within Xcc-8004.602.1at 555.444 kb on + strand, within Xcc-8004.602.1at 555.445 kb on - strand, within Xcc-8004.602.1at 555.525 kb on + strandat 555.587 kb on + strandat 555.587 kb on + strandat 555.588 kb on - strandat 555.588 kb on - strandat 555.704 kb on + strand, within Xcc-8004.603.1at 555.704 kb on + strand, within Xcc-8004.603.1at 555.704 kb on + strand, within Xcc-8004.603.1at 555.704 kb on + strand, within Xcc-8004.603.1at 555.705 kb on - strand, within Xcc-8004.603.1at 555.705 kb on - strand, within Xcc-8004.603.1at 555.781 kb on + strand, within Xcc-8004.603.1at 555.781 kb on + strand, within Xcc-8004.603.1at 555.882 kb on + strandat 555.883 kb on - strandat 555.899 kb on - strandat 555.899 kb on - strandat 555.899 kb on - strandat 555.899 kb on - strandat 555.916 kb on + strandat 555.916 kb on + strandat 555.916 kb on + strandat 555.916 kb on + strandat 555.916 kb on + strandat 555.916 kb on + strandat 555.916 kb on + strandat 555.917 kb on - strandat 555.917 kb on - strandat 555.917 kb on - strandat 555.917 kb on - strandat 555.917 kb on - strandat 555.917 kb on - strandat 555.917 kb on - strandat 555.917 kb on - strandat 555.917 kb on - strandat 555.917 kb on - strandat 555.927 kb on + strandat 555.927 kb on + strandat 555.927 kb on + strandat 555.927 kb on + strandat 555.927 kb on + strandat 555.927 kb on + strandat 555.927 kb on + strandat 555.927 kb on + strandat 555.927 kb on + strandat 555.927 kb on + strandat 555.928 kb on - strandat 555.928 kb on - strandat 555.928 kb on - strandat 555.928 kb on - strandat 555.928 kb on - strandat 555.983 kb on - strandat 556.141 kb on + strand, within Xcc-8004.604.1at 556.141 kb on + strand, within Xcc-8004.604.1at 556.141 kb on + strand, within Xcc-8004.604.1at 556.142 kb on - strand, within Xcc-8004.604.1at 556.142 kb on - strand, within Xcc-8004.604.1at 556.142 kb on - strand, within Xcc-8004.604.1at 556.142 kb on - strand, within Xcc-8004.604.1at 556.142 kb on - strand, within Xcc-8004.604.1at 556.142 kb on - strand, within Xcc-8004.604.1at 556.142 kb on - strand, within Xcc-8004.604.1at 556.303 kb on + strand, within Xcc-8004.604.1at 556.303 kb on + strand, within Xcc-8004.604.1at 556.303 kb on + strand, within Xcc-8004.604.1at 556.303 kb on + strand, within Xcc-8004.604.1at 556.303 kb on + strand, within Xcc-8004.604.1at 556.303 kb on + strand, within Xcc-8004.604.1at 556.303 kb on + strand, within Xcc-8004.604.1at 556.303 kb on + strand, within Xcc-8004.604.1at 556.303 kb on + strand, within Xcc-8004.604.1at 556.303 kb on + strand, within Xcc-8004.604.1at 556.304 kb on - strand, within Xcc-8004.604.1at 556.304 kb on - strand, within Xcc-8004.604.1at 556.304 kb on - strand, within Xcc-8004.604.1at 556.304 kb on - strand, within Xcc-8004.604.1at 556.304 kb on - strand, within Xcc-8004.604.1at 556.304 kb on - strand, within Xcc-8004.604.1at 556.304 kb on - strand, within Xcc-8004.604.1at 556.304 kb on - strand, within Xcc-8004.604.1at 556.304 kb on - strand, within Xcc-8004.604.1at 556.313 kb on - strand, within Xcc-8004.604.1at 556.313 kb on - strand, within Xcc-8004.604.1at 556.313 kb on - strand, within Xcc-8004.604.1at 556.337 kb on - strand, within Xcc-8004.604.1at 556.337 kb on - strand, within Xcc-8004.604.1at 556.390 kb on + strand, within Xcc-8004.604.1at 556.390 kb on + strand, within Xcc-8004.604.1at 556.390 kb on + strand, within Xcc-8004.604.1at 556.390 kb on + strand, within Xcc-8004.604.1at 556.390 kb on + strand, within Xcc-8004.604.1at 556.390 kb on + strand, within Xcc-8004.604.1at 556.391 kb on - strand, within Xcc-8004.604.1at 556.391 kb on - strand, within Xcc-8004.604.1at 556.447 kb on + strand, within Xcc-8004.604.1at 556.448 kb on - strand, within Xcc-8004.604.1at 556.448 kb on - strand, within Xcc-8004.604.1at 556.448 kb on - strand, within Xcc-8004.604.1at 556.465 kb on + strand, within Xcc-8004.604.1at 556.465 kb on + strand, within Xcc-8004.604.1at 556.465 kb on + strand, within Xcc-8004.604.1at 556.510 kb on + strand, within Xcc-8004.604.1at 556.511 kb on - strand, within Xcc-8004.604.1

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Per-strain Table

Position Strand Gene LocusTag Fraction PBS control
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554,288 + Xcc-8004.601.1 0.35 +1.3
554,288 + Xcc-8004.601.1 0.35 +1.2
554,289 - Xcc-8004.601.1 0.35 -0.3
554,289 - Xcc-8004.601.1 0.35 -0.2
554,289 - Xcc-8004.601.1 0.35 -0.6
554,406 + Xcc-8004.601.1 0.47 -2.5
554,407 - Xcc-8004.601.1 0.48 -2.1
554,422 + Xcc-8004.601.1 0.49 -0.8
554,456 + Xcc-8004.601.1 0.53 -3.3
554,486 + Xcc-8004.601.1 0.56 -0.5
554,487 - Xcc-8004.601.1 0.56 +0.2
554,487 - Xcc-8004.601.1 0.56 -0.7
554,513 + Xcc-8004.601.1 0.59 +0.5
554,771 + Xcc-8004.601.1 0.87 +0.7
554,771 + Xcc-8004.601.1 0.87 +0.7
554,772 - Xcc-8004.601.1 0.87 +0.2
554,902 + +0.8
554,902 + -0.3
554,902 + -1.3
554,902 + -0.1
554,903 - +0.3
554,903 - -0.2
554,903 - +0.0
554,903 - +0.7
554,967 - -1.7
554,971 + -0.4
554,971 + +1.0
554,971 + -1.5
554,971 + -0.6
554,972 - -0.7
554,972 - +0.9
554,972 - -2.7
554,972 - +0.0
554,972 - -0.4
554,972 - +1.3
554,972 - -0.4
554,972 - +1.2
554,972 - -0.2
554,972 - +0.2
554,972 - +1.3
554,972 - -0.5
555,045 + +0.2
555,046 - +1.9
555,122 + +0.8
555,129 + +1.8
555,370 - Xcc-8004.602.1 0.43 +1.7
555,444 + Xcc-8004.602.1 0.65 -1.2
555,444 + Xcc-8004.602.1 0.65 -0.4
555,445 - Xcc-8004.602.1 0.66 -1.0
555,525 + +0.5
555,587 + +0.1
555,587 + -0.5
555,588 - -1.8
555,588 - -0.7
555,704 + Xcc-8004.603.1 0.51 +0.5
555,704 + Xcc-8004.603.1 0.51 -0.8
555,704 + Xcc-8004.603.1 0.51 -0.9
555,704 + Xcc-8004.603.1 0.51 +0.9
555,705 - Xcc-8004.603.1 0.52 +1.7
555,705 - Xcc-8004.603.1 0.52 +0.4
555,781 + Xcc-8004.603.1 0.88 -0.1
555,781 + Xcc-8004.603.1 0.88 -0.4
555,882 + -1.9
555,883 - +0.9
555,899 - +0.3
555,899 - -1.2
555,899 - +0.4
555,899 - +0.2
555,916 + -1.9
555,916 + -0.9
555,916 + +0.1
555,916 + -1.6
555,916 + -0.7
555,916 + +0.5
555,916 + -1.4
555,917 - +0.7
555,917 - +0.4
555,917 - -0.7
555,917 - -1.0
555,917 - -0.4
555,917 - -1.5
555,917 - +0.8
555,917 - -0.0
555,917 - +1.5
555,917 - +0.8
555,927 + -0.9
555,927 + -0.7
555,927 + -0.4
555,927 + -0.0
555,927 + +0.9
555,927 + +0.4
555,927 + +0.0
555,927 + +0.4
555,927 + +1.2
555,927 + +0.0
555,928 - -1.0
555,928 - -0.2
555,928 - -0.9
555,928 - -0.4
555,928 - -0.1
555,983 - +0.3
556,141 + Xcc-8004.604.1 0.20 +0.3
556,141 + Xcc-8004.604.1 0.20 -0.5
556,141 + Xcc-8004.604.1 0.20 +0.2
556,142 - Xcc-8004.604.1 0.20 -0.3
556,142 - Xcc-8004.604.1 0.20 +0.4
556,142 - Xcc-8004.604.1 0.20 +0.3
556,142 - Xcc-8004.604.1 0.20 +2.1
556,142 - Xcc-8004.604.1 0.20 -0.6
556,142 - Xcc-8004.604.1 0.20 +0.9
556,142 - Xcc-8004.604.1 0.20 +0.2
556,303 + Xcc-8004.604.1 0.39 +0.9
556,303 + Xcc-8004.604.1 0.39 -0.8
556,303 + Xcc-8004.604.1 0.39 +0.4
556,303 + Xcc-8004.604.1 0.39 +0.1
556,303 + Xcc-8004.604.1 0.39 +0.3
556,303 + Xcc-8004.604.1 0.39 -0.2
556,303 + Xcc-8004.604.1 0.39 -0.5
556,303 + Xcc-8004.604.1 0.39 +0.9
556,303 + Xcc-8004.604.1 0.39 +1.4
556,303 + Xcc-8004.604.1 0.39 +0.1
556,304 - Xcc-8004.604.1 0.40 -2.3
556,304 - Xcc-8004.604.1 0.40 -0.0
556,304 - Xcc-8004.604.1 0.40 -0.3
556,304 - Xcc-8004.604.1 0.40 +0.7
556,304 - Xcc-8004.604.1 0.40 +2.2
556,304 - Xcc-8004.604.1 0.40 +0.7
556,304 - Xcc-8004.604.1 0.40 +0.4
556,304 - Xcc-8004.604.1 0.40 -0.1
556,304 - Xcc-8004.604.1 0.40 -0.4
556,313 - Xcc-8004.604.1 0.41 +1.3
556,313 - Xcc-8004.604.1 0.41 +0.7
556,313 - Xcc-8004.604.1 0.41 +0.1
556,337 - Xcc-8004.604.1 0.43 +0.3
556,337 - Xcc-8004.604.1 0.43 -0.9
556,390 + Xcc-8004.604.1 0.50 -0.8
556,390 + Xcc-8004.604.1 0.50 +1.3
556,390 + Xcc-8004.604.1 0.50 +0.5
556,390 + Xcc-8004.604.1 0.50 +0.5
556,390 + Xcc-8004.604.1 0.50 -0.8
556,390 + Xcc-8004.604.1 0.50 +0.4
556,391 - Xcc-8004.604.1 0.50 +0.4
556,391 - Xcc-8004.604.1 0.50 +1.3
556,447 + Xcc-8004.604.1 0.57 -0.2
556,448 - Xcc-8004.604.1 0.57 -1.0
556,448 - Xcc-8004.604.1 0.57 +0.0
556,448 - Xcc-8004.604.1 0.57 +0.2
556,465 + Xcc-8004.604.1 0.59 -0.6
556,465 + Xcc-8004.604.1 0.59 -0.2
556,465 + Xcc-8004.604.1 0.59 -0.6
556,510 + Xcc-8004.604.1 0.64 +0.2
556,511 - Xcc-8004.604.1 0.64 +0.3

Or see this region's nucleotide sequence