Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5065.1

Experiment: PBS control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PBS control
4,801,390	+		Xcc-8004.5063.1	0.85	+1.1
4,801,391	-		Xcc-8004.5063.1	0.85	-1.2
4,801,391	-		Xcc-8004.5063.1	0.85	+0.3
4,801,391	-		Xcc-8004.5063.1	0.85	-0.5
4,801,775	+				+0.1
4,801,775	+				+1.4
4,801,775	+				-0.6
4,801,775	+				-0.1
4,801,775	+				+0.1
4,801,775	+				-1.5
4,801,775	+				+0.4
4,801,776	-				-1.7
4,801,776	-				-0.4
4,801,776	-				-0.4
4,801,776	-				-0.5
4,801,776	-				-1.2
4,801,779	+				+0.5
4,801,779	+				+0.6
4,801,779	+				-0.6
4,801,779	+				+1.2
4,801,779	+				+0.0
4,801,780	-				-0.6
4,801,780	-				+0.5
4,801,780	-				+0.3
4,801,780	-				-1.5
4,801,780	-				+0.3
4,801,780	-				-0.2
4,801,780	-				+0.4
4,801,780	-				-0.0
4,801,815	-				+0.0
4,801,819	+				+1.3
4,801,819	+				-0.6
4,801,888	+				-1.5
4,801,995	+				-0.9
4,802,041	-		Xcc-8004.5064.1	0.51	+0.3
4,802,041	-		Xcc-8004.5064.1	0.51	+0.1
4,802,041	-		Xcc-8004.5064.1	0.51	-1.5
4,802,052	+		Xcc-8004.5064.1	0.62	-0.3
4,802,053	-		Xcc-8004.5064.1	0.63	+0.5
4,802,122	+				-1.1
4,802,123	-				-0.1
4,802,207	+				+2.4
4,802,207	+				+0.3
4,802,207	+				+1.6
4,802,207	+				+0.3
4,802,207	+				+0.1
4,802,207	+				+0.4
4,802,208	-				+1.4
4,802,208	-				+0.1
4,802,208	-				-2.0
4,802,208	-				+0.7
4,802,208	-				-0.0
4,802,208	-				-0.2
4,802,208	-				-0.3
4,802,249	+				-1.2
4,802,249	+				-2.9
4,802,249	+				-1.6
4,802,249	+				+0.1
4,802,249	+				-0.7
4,802,250	-				-0.9
4,802,250	-				+0.4
4,802,250	-				-0.7
4,802,435	+		Xcc-8004.5065.1	0.17	-0.6
4,802,435	+		Xcc-8004.5065.1	0.17	+1.6
4,802,435	+		Xcc-8004.5065.1	0.17	-0.9
4,802,435	+		Xcc-8004.5065.1	0.17	-0.4
4,802,436	-		Xcc-8004.5065.1	0.17	+1.8
4,802,436	-		Xcc-8004.5065.1	0.17	-0.3
4,802,777	+		Xcc-8004.5065.1	0.42	-2.0
4,802,777	+		Xcc-8004.5065.1	0.42	-0.2
4,802,777	+		Xcc-8004.5065.1	0.42	+0.8
4,802,777	+		Xcc-8004.5065.1	0.42	-0.7
4,802,778	-		Xcc-8004.5065.1	0.42	-1.3
4,802,778	-		Xcc-8004.5065.1	0.42	-1.1
4,802,778	-		Xcc-8004.5065.1	0.42	-2.2
4,802,778	-		Xcc-8004.5065.1	0.42	+0.4
4,802,778	-		Xcc-8004.5065.1	0.42	+0.8
4,802,779	-		Xcc-8004.5065.1	0.42	-2.0
4,803,086	+		Xcc-8004.5065.1	0.64	-1.3
4,803,086	+		Xcc-8004.5065.1	0.64	+2.2
4,803,086	+		Xcc-8004.5065.1	0.64	-1.6
4,803,086	+		Xcc-8004.5065.1	0.64	-0.3
4,803,086	+		Xcc-8004.5065.1	0.64	+0.3
4,803,086	+		Xcc-8004.5065.1	0.64	-0.2
4,803,086	+		Xcc-8004.5065.1	0.64	-0.3
4,803,087	-		Xcc-8004.5065.1	0.64	-2.2
4,803,087	-		Xcc-8004.5065.1	0.64	-1.2
4,803,087	-		Xcc-8004.5065.1	0.64	-0.6
4,803,087	-		Xcc-8004.5065.1	0.64	-0.6
4,803,087	-		Xcc-8004.5065.1	0.64	-0.3
4,803,095	+		Xcc-8004.5065.1	0.65	-0.9
4,803,095	+		Xcc-8004.5065.1	0.65	-0.5
4,803,095	+		Xcc-8004.5065.1	0.65	-0.9
4,803,096	-		Xcc-8004.5065.1	0.65	-0.4
4,803,096	-		Xcc-8004.5065.1	0.65	-0.1
4,803,096	-		Xcc-8004.5065.1	0.65	-1.7
4,803,096	-		Xcc-8004.5065.1	0.65	-1.0
4,803,485	+				-1.0
4,803,569	+				+0.8
4,803,569	+				-1.5
4,803,569	+				+0.0
4,803,569	+				+0.7
4,803,570	-				-0.0
4,803,570	-				-0.2
4,803,570	-				-1.2
4,803,570	-				-0.6
4,803,570	-				-0.3
4,803,661	+				-0.6
4,803,661	+				+1.3
4,803,662	-				-1.8
4,803,697	+				-1.5
4,803,698	-				-0.7
4,803,698	-				+0.7
4,803,698	-				-0.4
4,803,698	-				-2.0
4,803,785	+				+0.0
4,803,785	+				-0.5
4,803,785	+				+1.5
4,803,785	+				-0.9
4,803,786	-				-1.3
4,803,786	-				+1.8
4,803,786	-				+1.8
4,803,786	-				+1.3
4,803,786	-				+1.4
4,803,889	+				-0.6
4,803,889	+				+0.0
4,803,889	+				-2.3
4,803,889	+				+0.5
4,803,889	+				-0.0
4,803,889	+				-0.0
4,803,889	+				+0.7
4,803,889	+				-0.0
4,803,889	+				+1.2
4,803,890	-				+0.0
4,803,890	-				+0.3
4,803,890	-				+0.4
4,803,890	-				-0.1
4,803,890	-				-1.3
4,803,890	-				+0.4
4,803,890	-				-1.0
4,803,890	-				-0.5
4,803,890	-				+0.8
4,803,890	-				+0.4
4,803,890	-				+0.5
4,803,891	+				+0.3
4,803,891	+				+0.0
4,803,891	+				+1.4
4,803,891	+				-1.1
4,803,891	+				-0.4
4,803,891	+				+0.1
4,803,891	+				+0.6
4,803,892	-				-0.2
4,803,892	-				-0.4
4,803,892	-				-0.5
4,803,892	-				-0.0
4,803,892	-				-0.9
4,803,892	-				+0.6
4,803,892	-				+0.2
4,803,892	-				+1.6
4,803,892	-				-0.4
4,803,901	+				+0.1
4,803,929	+				+0.0
4,803,930	-				-1.0
4,803,977	+				+0.4
4,803,977	+				+0.3
4,803,977	+				+0.1
4,803,977	+				+0.5
4,803,977	+				-0.1
4,803,978	-				+0.3
4,803,978	-				+1.2
4,803,978	-				+0.3
4,803,978	-				-0.7
4,803,978	-				-0.7
4,803,978	-				-0.4
4,803,978	-				+1.8
4,803,978	-				+0.3
4,803,978	-				+0.1
4,804,003	-				-0.3
4,804,174	+				-0.2
4,804,175	-				-1.2
4,804,175	-				-0.4
4,804,198	+				-0.7
4,804,198	+				+0.4
4,804,199	-				-0.7
4,804,199	-				-1.0
4,804,199	-				-0.5
4,804,308	+		Xcc-8004.5066.1	0.19	+1.8
4,804,308	+		Xcc-8004.5066.1	0.19	+1.2
4,804,308	+		Xcc-8004.5066.1	0.19	+0.0
4,804,443	+		Xcc-8004.5066.1	0.36	+0.4
4,804,443	+		Xcc-8004.5066.1	0.36	+0.3
4,804,444	-		Xcc-8004.5066.1	0.36	+0.4
4,804,444	-		Xcc-8004.5066.1	0.36	+0.4
4,804,536	+		Xcc-8004.5066.1	0.47	-0.7
4,804,536	+		Xcc-8004.5066.1	0.47	+0.7
4,804,536	+		Xcc-8004.5066.1	0.47	+0.2
4,804,536	+		Xcc-8004.5066.1	0.47	-0.1
4,804,537	-		Xcc-8004.5066.1	0.47	-0.4
4,804,537	-		Xcc-8004.5066.1	0.47	-0.8
4,804,537	-		Xcc-8004.5066.1	0.47	-0.3
4,804,537	-		Xcc-8004.5066.1	0.47	-0.9